4C3HL

Structure of 14-subunit rna polymerase i at 3.27 a resolution, crystal form c2-93
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
45
structure length
45
Chain Sequence
b'TLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190
publication title Crystal Structure of the 14-Subunit RNA Polymerase I
pubmed doi rcsb
molecule tags Transcription
total genus 2
structure length 45
sequence length 45
ec nomenclature
pdb deposition date 2013-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 4c3hL00
5IYCL 3S2DL 5C44L 4QIWP 2PMZP 4BXXL 3HOZL 4C3JL 3S1ML 4C3HL 3M4OL 4Y52L 3GTJL 2NVTL 3H3VM 4A3BL 3K7AL 3FKIL 3HOXL 4A3GL 1K83L 2NVQL 3S17L 3HOVL 3HOWL 4A3FL 3S1QL 4A3LL 3CQZL 2B63L 3PO3L 4A3ML 5C4XL 3HOYL 4A3EL 1SFOL 4A3DL 3GTLL 1Y1VL 3I4ML 2WB1P 2R92L 4C2M1 3RZDL 3M3YL 3S2HL 2E2IL 1R9TL 2NVXL 1TWGL 2YU9L 2VUML 5IYDL 3S1RL 2E2HL 4C3IL 5IYBL 1WCML 3GTGL 5M5WL 2R93L 1Y1WL 4X6AL 3GTKL 1TWFL 1I6HL 3S15L 2JA8L 5IP9L 5M5XL 3HOUL 3S14L 2Y0SP 4BBRL 2JA6L 1TWAL 3H0GL 2NVYL 2WAQP 3GTOL 3S1NL 5IP7L 3RZOL 3GTPL 2E2JL 4A93L 2R7ZL 1I50L 5C4JL 1I3QL 2JA7L 2JA5L 3GTQL 5FLML 4A3KL 3I4NL 3GTML 5M5YL 4BY1L 3PO2L 5M3FL 4Y7NL 3HKZP 4AYBP 4BY7L 5C3EL 4A3JL 3S16L 4BBSL 1TWHL 5FJ8L 4A3IL 1TWCL 5M3ML 4A3CL
chains in the Genus database with same CATH superfamily
1SMUA 5AN9H 4QIWP 2PMZP 5DM71 3HOZL 1WJVA 5IY0A 2M6PA 1YUXA 4C3JL 1CADA 3S1ML 4JAGA 3M4OL 3PIO1 2A68D 2Z3QB 1OWBA 3B0AB 5GAGc 1BQ9A 1RYQA 4AI2A 2EY4E 4ZN1B 3HOWL 5K2ME 3S1QL 3MPSA 1BQ8A 1BRFA 3H97A 1H7VA 1R0HA 1IRNA 2C6AA 4A3EL 4UY81 3GTLL 1IU5A 2CKCA 2XJVA 4C2M1 2E2IL 3H99A 1RWDA 4POGA 1RDVA 1YUZA 4X6AL 1TWFL 3S15L 1DX8A 1Z92B 3SS2A 4JAFA 3J7Y1 3H9BA 3QQCE 3HOUL 2JA6L 4BBRL 1T9QA 4ZN3B 1QYBA 2AQCA 3PIP1 1OWCA 4AHYA 3PL5A 2R7ZL 1PFYA 5C4JL 1RDGA 1I3QL 2JA5L 3GTQL 4A3KL 3I4NL 1FHHA 2A6HD 4BY1L 5M3FL 4Y7NL 8RXNA 4BY7L 3FDJA 5C3EL 5GAHc 5AI2A 1TWHL 3P2AA 5FJ8L 4TVMA 2B5ID 4A3IL 1T9PA 1QCVA 2ERSA 2O5JD 1BE7A 1ODHA 2QL0A 2Z3RB 2A6ED 3QVDA 3ZG6A 3PKIA 4C3HL 3RYGA 2BE5D 2NVTL 3FKIL 4XGHA 2KKDA 4U671 4TPUA 2RFKB 1YV1A 4WFN1 2NVQL 3S17L 1RYTA 5AI3A 4A3FL 5DM61 3KYWA 4A3LL 2XJUA 1R0GA 4A3ML 1IW7D 5C4XL 2MS3A 2XJTA 1PFWA 1IROA 3LNLA 1PZXA 5JVG1 5H1Sc 1SFOL 4AR3A 1Y1VL 3RZDL 2ZIXA 1R9TL 2NVXL 2PYAA 1VZHA 4YWLA 4LHNA 3HJYB 3HAXC 5IYBL 3GTGL 4LHLA 5M5WL 2V0EA 1NXGA 3GTKL 1SMMA 1LTLA 4JADA 5IP9L 2LCQA 3S14L 3PZAA 2XJRA 3MSUA 5MF6A 1PFVA 1LKMA 3RZOL 1F4LA 2PVXA 3LPEB 3WWNB 1S30A 2JA7L 2XJSA 1YK4A 3PO2L 3HKZP 6RXNA 5EIOC 2HR5A 1IU6A 2VL6A 1TWCL 2ERJA 5IYCL 5C44L 4K9FA 2CKAA 2DSXA 3LWRB 5RXNA 4Y52L 3LWVB 3H3VM 4A3BL 3H9CA 1B71A 1BFYA 2B63L 1R0FA 2M4YA 3PO3L 3J7Z1 4AI3A 3PKJA 2M6OA 2PPTA 3HOYL 4A3DL 3P8BA 3LWOB 3M3YL 2R92L 3S2HL 2AYJA 5MGNA 3VPBE 2VUML 5IYDL 2E2HL 2GMGA 4C3IL 2XJPA 1WCML 2R93L 2K2DA 2PVEA 1Y1WL 2APOB 1I6HL 1QQTA 4POFA 5M5XL 1RB9A 1B13A 2V3BB 2JI2A 1SMWA 5MLC3 4RXNA 1TWAL 3H0GL 2M4VA 2C6BA 3GTOL 3S1NL 5IP7L 1VCXA 3A44A 3KYUA 1P7PA 1T9OA 2AUSB 4JAEA 1I50L 1R0IA 3JR7A 4G6BA 4AHZA 2NYDA 5FLML 3B08B 4B8CD 4AR5A 4AHWA 2V0FA 4A3JL 3S16L 3HJWB 3LWQB 3RZTA 5M3ML 3WWLA 3S2DL 4BXXL 1FHMA 7RXNA 3PWFA 2CR8A 2L0ZA 3GTJL 1VZGA 3K7AL 3HOXL 1NNQA 4A3GL 1S24A 2JI3A 2PSMC 5GADc 1K83L 1LKOA 4E6YA 5JVH1 3KYXA 3HOVL 1R0JA 3CQZL 3NFPI 1NXEA 2KN9A 4ME3A 1B2JA 3KYVA 4V196 4GS7D 3I4ML 1DVBA 1CAAA 2WB1P 1B2OA 5MFZA 1PFUA 1ZRPA 1TWGL 4AR6A 4AR4A 2YU9L 3IU3I 3K35A 3S1RL 2J9UB 2A69D 3LWPB 1S2ZA 4AI0A 2XJQA 2JI1A 3KYYA 2H12A 4AI1A 2JA8L 1C09A 4YWMA 5EINC 2Y0SP 2NVYL 2HVYC 2WAQP 4XXBB 3GTPL 3MQKB 2E2JL 4A93L 1YK5A 4AHXA 1JYBA 3GTML 3RZ6A 2RDVA 5M5YL 1E8JA 4AYBP 5MFPA 5GAEc 4BBSL 1VZIA 4A3CL 1LKPA
chains in the Genus database with same CATH topology
5IYCL 3S2DL 5C44L 4QIWP 2PMZP 4BXXL 3HOZL 4C3JL 3S1ML 4C3HL 3M4OL 4Y52L 3GTJL 2NVTL 3H3VM 4A3BL 3K7AL 3FKIL 3HOXL 4A3GL 1K83L 2NVQL 3S17L 3HOVL 3HOWL 4A3FL 3S1QL 4A3LL 3CQZL 2B63L 3PO3L 4A3ML 5C4XL 3HOYL 4A3EL 1SFOL 4A3DL 3GTLL 1Y1VL 3I4ML 2WB1P 2R92L 4C2M1 3RZDL 3M3YL 3S2HL 2E2IL 1R9TL 2NVXL 1TWGL 2YU9L 2VUML 5IYDL 3S1RL 2E2HL 4C3IL 5IYBL 1WCML 3GTGL 5M5WL 2R93L 1Y1WL 4X6AL 3GTKL 1TWFL 1I6HL 3S15L 2JA8L 5IP9L 5M5XL 3HOUL 3S14L 2Y0SP 4BBRL 2JA6L 1TWAL 3H0GL 2NVYL 2WAQP 3GTOL 3S1NL 5IP7L 3RZOL 3GTPL 2E2JL 4A93L 2R7ZL 1I50L 5C4JL 1I3QL 2JA7L 2JA5L 3GTQL 5FLML 4A3KL 3I4NL 3GTML 5M5YL 4BY1L 3PO2L 5M3FL 4Y7NL 3HKZP 4AYBP 4BY7L 5C3EL 4A3JL 3S16L 4BBSL 1TWHL 5FJ8L 4A3IL 1TWCL 5M3ML 4A3CL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYC L;  3S2D L;  5C44 L;  4QIW P;  2PMZ P;  4BXX L;  3HOZ L;  4C3J L;  3S1M L;  4C3H L;  3M4O L;  4Y52 L;  3GTJ L;  2NVT L;  3H3V M;  4A3B L;  3K7A L;  3FKI L;  3HOX L;  4A3G L;  1K83 L;  2NVQ L;  3S17 L;  3HOV L;  3HOW L;  4A3F L;  3S1Q L;  4A3L L;  3CQZ L;  2B63 L;  3PO3 L;  4A3M L;  5C4X L;  3HOY L;  4A3E L;  1SFO L;  4A3D L;  3GTL L;  1Y1V L;  3I4M L;  2WB1 P;  2R92 L;  4C2M 1;  3RZD L;  3M3Y L;  3S2H L;  2E2I L;  1R9T L;  2NVX L;  1TWG L;  2YU9 L;  2VUM L;  5IYD L;  3S1R L;  2E2H L;  4C3I L;  5IYB L;  1WCM L;  3GTG L;  5M5W L;  2R93 L;  1Y1W L;  4X6A L;  3GTK L;  1TWF L;  1I6H L;  3S15 L;  2JA8 L;  5IP9 L;  5M5X L;  3HOU L;  3S14 L;  2Y0S P;  4BBR L;  2JA6 L;  1TWA L;  3H0G L;  2NVY L;  2WAQ P;  3GTO L;  3S1N L;  5IP7 L;  3RZO L;  3GTP L;  2E2J L;  4A93 L;  2R7Z L;  1I50 L;  5C4J L;  1I3Q L;  2JA7 L;  2JA5 L;  3GTQ L;  5FLM L;  4A3K L;  3I4N L;  3GTM L;  5M5Y L;  4BY1 L;  3PO2 L;  5M3F L;  4Y7N L;  3HKZ P;  4AYB P;  4BY7 L;  5C3E L;  4A3J L;  3S16 L;  4BBS L;  1TWH L;  5FJ8 L;  4A3I L;  1TWC L;  5M3M L;  4A3C L; 
#chains in the Genus database with same CATH topology
 1SMU A;  5AN9 H;  4QIW P;  2PMZ P;  5DM7 1;  3HOZ L;  1WJV A;  5IY0 A;  2M6P A;  1YUX A;  4C3J L;  1CAD A;  3S1M L;  4JAG A;  3M4O L;  3PIO 1;  2A68 D;  2Z3Q B;  1OWB A;  3B0A B;  5GAG c;  1BQ9 A;  1RYQ A;  4AI2 A;  2EY4 E;  4ZN1 B;  3HOW L;  5K2M E;  3S1Q L;  3MPS A;  1BQ8 A;  1BRF A;  3H97 A;  1H7V A;  1R0H A;  1IRN A;  2C6A A;  4A3E L;  4UY8 1;  3GTL L;  1IU5 A;  2CKC A;  2XJV A;  4C2M 1;  2E2I L;  3H99 A;  1RWD A;  4POG A;  1RDV A;  1YUZ A;  4X6A L;  1TWF L;  3S15 L;  1DX8 A;  1Z92 B;  3SS2 A;  4JAF A;  3J7Y 1;  3H9B A;  3QQC E;  3HOU L;  2JA6 L;  4BBR L;  1T9Q A;  4ZN3 B;  1QYB A;  2AQC A;  3PIP 1;  1OWC A;  4AHY A;  3PL5 A;  2R7Z L;  1PFY A;  5C4J L;  1RDG A;  1I3Q L;  2JA5 L;  3GTQ L;  4A3K L;  3I4N L;  1FHH A;  2A6H D;  4BY1 L;  5M3F L;  4Y7N L;  8RXN A;  4BY7 L;  3FDJ A;  5C3E L;  5GAH c;  5AI2 A;  1TWH L;  3P2A A;  5FJ8 L;  4TVM A;  2B5I D;  4A3I L;  1T9P A;  1QCV A;  2ERS A;  2O5J D;  1BE7 A;  1ODH A;  2QL0 A;  2Z3R B;  2A6E D;  3QVD A;  3ZG6 A;  3PKI A;  4C3H L;  3RYG A;  2BE5 D;  2NVT L;  3FKI L;  4XGH A;  2KKD A;  4U67 1;  4TPU A;  2RFK B;  1YV1 A;  4WFN 1;  2NVQ L;  3S17 L;  1RYT A;  5AI3 A;  4A3F L;  5DM6 1;  3KYW A;  4A3L L;  2XJU A;  1R0G A;  4A3M L;  1IW7 D;  5C4X L;  2MS3 A;  2XJT A;  1PFW A;  1IRO A;  3LNL A;  1PZX A;  5JVG 1;  5H1S c;  1SFO L;  4AR3 A;  1Y1V L;  3RZD L;  2ZIX A;  1R9T L;  2NVX L;  2PYA A;  1VZH A;  4YWL A;  4LHN A;  3HJY B;  3HAX C;  5IYB L;  3GTG L;  4LHL A;  5M5W L;  2V0E A;  1NXG A;  3GTK L;  1SMM A;  1LTL A;  4JAD A;  5IP9 L;  2LCQ A;  3S14 L;  3PZA A;  2XJR A;  3MSU A;  5MF6 A;  1PFV A;  1LKM A;  3RZO L;  1F4L A;  2PVX A;  3LPE B;  3WWN B;  1S30 A;  2JA7 L;  2XJS A;  1YK4 A;  3PO2 L;  3HKZ P;  6RXN A;  5EIO C;  2HR5 A;  1IU6 A;  2VL6 A;  1TWC L;  2ERJ A;  5IYC L;  5C44 L;  4K9F A;  2CKA A;  2DSX A;  3LWR B;  5RXN A;  4Y52 L;  3LWV B;  3H3V M;  4A3B L;  3H9C A;  1B71 A;  1BFY A;  2B63 L;  1R0F A;  2M4Y A;  3PO3 L;  3J7Z 1;  4AI3 A;  3PKJ A;  2M6O A;  2PPT A;  3HOY L;  4A3D L;  3P8B A;  3LWO B;  3M3Y L;  2R92 L;  3S2H L;  2AYJ A;  5MGN A;  3VPB E;  2VUM L;  5IYD L;  2E2H L;  2GMG A;  4C3I L;  2XJP A;  1WCM L;  2R93 L;  2K2D A;  2PVE A;  1Y1W L;  2APO B;  1I6H L;  1QQT A;  4POF A;  5M5X L;  1RB9 A;  1B13 A;  2V3B B;  2JI2 A;  1SMW A;  5MLC 3;  4RXN A;  1TWA L;  3H0G L;  2M4V A;  2C6B A;  3GTO L;  3S1N L;  5IP7 L;  1VCX A;  3A44 A;  3KYU A;  1P7P A;  1T9O A;  2AUS B;  4JAE A;  1I50 L;  1R0I A;  3JR7 A;  4G6B A;  4AHZ A;  2NYD A;  5FLM L;  3B08 B;  4B8C D;  4AR5 A;  4AHW A;  2V0F A;  4A3J L;  3S16 L;  3HJW B;  3LWQ B;  3RZT A;  5M3M L;  3WWL A;  3S2D L;  4BXX L;  1FHM A;  7RXN A;  3PWF A;  2CR8 A;  2L0Z A;  3GTJ L;  1VZG A;  3K7A L;  3HOX L;  1NNQ A;  4A3G L;  1S24 A;  2JI3 A;  2PSM C;  5GAD c;  1K83 L;  1LKO A;  4E6Y A;  5JVH 1;  3KYX A;  3HOV L;  1R0J A;  3CQZ L;  3NFP I;  1NXE A;  2KN9 A;  4ME3 A;  1B2J A;  3KYV A;  4V19 6;  4GS7 D;  3I4M L;  1DVB A;  1CAA A;  2WB1 P;  1B2O A;  5MFZ A;  1PFU A;  1ZRP A;  1TWG L;  4AR6 A;  4AR4 A;  2YU9 L;  3IU3 I;  3K35 A;  3S1R L;  2J9U B;  2A69 D;  3LWP B;  1S2Z A;  4AI0 A;  2XJQ A;  2JI1 A;  3KYY A;  2H12 A;  4AI1 A;  2JA8 L;  1C09 A;  4YWM A;  5EIN C;  2Y0S P;  2NVY L;  2HVY C;  2WAQ P;  4XXB B;  3GTP L;  3MQK B;  2E2J L;  4A93 L;  1YK5 A;  4AHX A;  1JYB A;  3GTM L;  3RZ6 A;  2RDV A;  5M5Y L;  1E8J A;  4AYB P;  5MFP A;  5GAE c;  4BBS L;  1VZI A;  4A3C L;  1LKP A; 
#chains in the Genus database with same CATH homology
 5IYC L;  3S2D L;  5C44 L;  4QIW P;  2PMZ P;  4BXX L;  3HOZ L;  4C3J L;  3S1M L;  4C3H L;  3M4O L;  4Y52 L;  3GTJ L;  2NVT L;  3H3V M;  4A3B L;  3K7A L;  3FKI L;  3HOX L;  4A3G L;  1K83 L;  2NVQ L;  3S17 L;  3HOV L;  3HOW L;  4A3F L;  3S1Q L;  4A3L L;  3CQZ L;  2B63 L;  3PO3 L;  4A3M L;  5C4X L;  3HOY L;  4A3E L;  1SFO L;  4A3D L;  3GTL L;  1Y1V L;  3I4M L;  2WB1 P;  2R92 L;  4C2M 1;  3RZD L;  3M3Y L;  3S2H L;  2E2I L;  1R9T L;  2NVX L;  1TWG L;  2YU9 L;  2VUM L;  5IYD L;  3S1R L;  2E2H L;  4C3I L;  5IYB L;  1WCM L;  3GTG L;  5M5W L;  2R93 L;  1Y1W L;  4X6A L;  3GTK L;  1TWF L;  1I6H L;  3S15 L;  2JA8 L;  5IP9 L;  5M5X L;  3HOU L;  3S14 L;  2Y0S P;  4BBR L;  2JA6 L;  1TWA L;  3H0G L;  2NVY L;  2WAQ P;  3GTO L;  3S1N L;  5IP7 L;  3RZO L;  3GTP L;  2E2J L;  4A93 L;  2R7Z L;  1I50 L;  5C4J L;  1I3Q L;  2JA7 L;  2JA5 L;  3GTQ L;  5FLM L;  4A3K L;  3I4N L;  3GTM L;  5M5Y L;  4BY1 L;  3PO2 L;  5M3F L;  4Y7N L;  3HKZ P;  4AYB P;  4BY7 L;  5C3E L;  4A3J L;  3S16 L;  4BBS L;  1TWH L;  5FJ8 L;  4A3I L;  1TWC L;  5M3M L;  4A3C L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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