4C3JE

Structure of 14-subunit rna polymerase i at 3.35 a resolution, crystal form c2-90
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
215
structure length
215
Chain Sequence
MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190
publication title Crystal Structure of the 14-Subunit RNA Polymerase I
pubmed doi rcsb
total genus 65
structure length 215
sequence length 215
ec nomenclature
pdb deposition date 2013-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
E PF03871 RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1340.10 Alpha Beta 3-Layer(aba) Sandwich Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1 RNA polymerase, Rpb5, N-terminal domain 4c3jE01
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 4c3jE02
5IYBE 5C3EE 1WCME 4QIWH 3I4ME 3H3VF 5FLME 4C3HE 4A3FE 5IYCE 5M5WE 4A3IE 3GTLE 3S17E 2PMZH 4A93E 1TWGE 2E2IE 4BY1E 2R92E 3GTKE 2NVXE 4BBSE 4A3ME 1I3QE 2B63E 2JA5E 5IP9E 3M4OE 2VUME 2NVTE 5M3FE 3I4NE 3K7AE 1Y1VE 3FKIE 3HOVE 4BXXE 1TWCE 4A3CE 4C3IE 1SFOE 2E2HE 2JA8E 3PO2E 4A3JE 3HOWE 3RZOE 5C4XE 3S1ME 3PO3E 2JA6E 3S1RE 3GTOE 2WAQH 2R93E 3M3YE 2NVQE 3HOYE 4A3KE 3GTJE 4X6AE 4Y52E 3RZDE 3S2DE 3HOZE 4BY7E 5C44E 5C4JE 2WB1H 4C2ME 1Y1WE 2YU9E 3S1NE 4A3LE 1I6HE 5M5XE 5IYDE 4AYBH 1TWFE 3GTGE 3GTME 4BBRE 3CQZE 1EIKA 5M3ME 4C3JE 3GTPE 2JA7E 1TWAE 2NVYE 3HKZH 2R7ZE 5M5YE 1DZFA 3GTQE 4A3DE 1I50E 1TWHE 4Y7NE 4A3EE 2E2JE 3S14E 1R9TE 3H0GE 3S16E 5FJ8E 4A3GE 2Y0SH 4A3BE 5IP7E 3S2HE 3HOXE 3S1QE 3HOUE 1K83E 3S15E
chains in the Genus database with same CATH superfamily
2E2IF 4BY1F 5IYBE 2R92F 5C3EE 5TMCE 1WCME 1QKLA 4G7ZE 4OIPE 2NVXF 3S2HF 4BBSF 3S1QF 4QIWH 3I4ME 4OIOE 3H3VF 4A3MF 1I3QF 2B63F 5FLME 2JA5F 4Q5SE 4OINE 4C3HE 4A3FE 5IP9F 3H3VG 2VUMF 1ZYRE 3M4OF 4XSXE 5M3FF 3I4NF 5IYCE 5M5WE 4A3IE 3K7AF 4MQ9E 3FKIF 4XSZE 3HOVF 1TWCF 4BXXF 4KMUE 4A3CF 4LLGE 3WODE 3GTLE 3S17E 2PMZH 1SFOF 2E2HF 2JA8F 3PO2F 4ZH4E 4A93E 1TWGE 2E2IE 4BY1E 2R92E 4MEYE 3HOWF 3GTKE 4GZYE 3RZOF 2NVXE 4BBSE 5C4XF 3GTLF 3S1MF 4G7OE 3PO3F 2WB1I 4A3ME 2A6HE 1I3QE 2B63E 2JA6F 3S1RF 2JA5E 3GTOF 2KRXA 5IP9E 2WAQK 3M4OE 2VUME 4KN4E 2NVTE 3GTKF 5M3FE 3I4NE 4OIQE 3M3YF 2R93F 3K7AE 1Y1VE 3FKIE 3HOVE 4BXXE 1TWCE 3GTJF 4A3KF 4Y52F 2NVQF 4A3CE 4C3IE 2NVTF 3RZDF 1SFOE 2E2HE 2JA8E 3HOZF 5BYHE 3PO2E 4BY7F 3S2DF 1Y1VF 4A3JE 5C44F 3HOWE 4YG2E 5C4JF 2O5IE 3RZOE 2A69E 4XLPE 5C4XE 3S1ME 4C2MF 4C3IF 1Y1WF 2YU9F 5IPLE 3PO3E 2JA6E 4A3LF 3S1RE 5M5XF 3GTOE 1I6HF 4A3JF 4AYBK 2WAQH 1TWFF 2R93E 3GTGF 2A68E 3M3YE 4Q4ZE 3CQZF 4BBRF 3GTMF 4OIRE 2NVQE 3HOYE 4A3KE 3GTJE 4X6AE 4C3JF 4Y52E 3GTPF 3HOYF 5TMFE 1YNNK 2JA7F 3RZDE 1TWAF 3S2DE 3HOZE 2NVYF 4BY7E 3HKZK 2Y0SI 5C44E 2R7ZF 4YFKE 5C4JE 1IW7E 2WB1H 1SMYE 5M5YF 2PPBE 5E17E 4C2ME 3GTQF 4A3DF 1Y1WE 2YU9E 1I50F 3S1NE 4A3LE 1TWHF 4XLNE 5D4CE 1I6HE 5M5XE 4YFXE 5IYDE 4Y7NF 4LJZE 4A3EF 4AYBH 1TWFE 2E2JF 3S14F 3GTGE 3GTME 4BBRE 3H0GF 3CQZE 4LK1E 1R9TF 1EIKA 5M3ME 3S1NF 4C3JE 3GTPE 1I6VE 4G7HE 3S16F 5IYDF 5FJ8F 4X6AF 4A3GF 2JA7E 1HQME 1TWAE 4A3BF 4KN7E 5IP7F 2NVYE 3HKZH 5M3MF 3HOXF 2R7ZE 2A6EE 3HOUF 4YFNE 5M5YE 1K83F 1DZFA 4JK1E 3S15F 3GTQE 4A3DE 1I50E 5D4EE 1TWHE 5IYBF 5C3EF 1WCMF 4Y7NE 2CW0E 4A3EE 5E18E 2E2JE 4QIWK 3S14E 3I4MF 1R9TE 3H0GE 2BE5E 5FLMF 4C3HF 4A3FF 1YNJK 3S16E 5FJ8E 4MEXE 5IYCF 5M5WF 5D4DE 4A3IF 4A3GE 3DXJE 2Y0SH 4A3BE 5IP7E 3S2HE 4LK0E 3HOXE 3EQLE 3S1QE 3HOUE 2PMZK 3S17F 2O5JE 1K83E 3S15E 4A93F 1TWGF
chains in the Genus database with same CATH topology
5IYBE 5C3EE 1WCME 4QIWH 3I4ME 3H3VF 5FLME 4C3HE 4A3FE 5IYCE 5M5WE 4A3IE 3GTLE 3S17E 2PMZH 4A93E 1TWGE 2E2IE 4BY1E 2R92E 3GTKE 2NVXE 4BBSE 4A3ME 1I3QE 2B63E 2JA5E 5IP9E 3M4OE 2VUME 2NVTE 5M3FE 3I4NE 3K7AE 1Y1VE 3FKIE 3HOVE 4BXXE 1TWCE 4A3CE 4C3IE 1SFOE 2E2HE 2JA8E 3PO2E 4A3JE 3HOWE 3RZOE 5C4XE 3S1ME 3PO3E 2JA6E 3S1RE 3GTOE 2WAQH 2R93E 3M3YE 2NVQE 3HOYE 4A3KE 3GTJE 4X6AE 4Y52E 3RZDE 3S2DE 3HOZE 4BY7E 5C44E 5C4JE 2WB1H 4C2ME 1Y1WE 2YU9E 3S1NE 4A3LE 1I6HE 5M5XE 5IYDE 4AYBH 1TWFE 3GTGE 3GTME 4BBRE 3CQZE 1EIKA 5M3ME 4C3JE 3GTPE 2JA7E 1TWAE 2NVYE 3HKZH 2R7ZE 5M5YE 1DZFA 3GTQE 4A3DE 1I50E 1TWHE 4Y7NE 4A3EE 2E2JE 3S14E 1R9TE 3H0GE 3S16E 5FJ8E 4A3GE 2Y0SH 4A3BE 5IP7E 3S2HE 3HOXE 3S1QE 3HOUE 1K83E 3S15E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYB E;  5C3E E;  1WCM E;  4QIW H;  3I4M E;  3H3V F;  5FLM E;  4C3H E;  4A3F E;  5IYC E;  5M5W E;  4A3I E;  3GTL E;  3S17 E;  2PMZ H;  4A93 E;  1TWG E;  2E2I E;  4BY1 E;  2R92 E;  3GTK E;  2NVX E;  4BBS E;  4A3M E;  1I3Q E;  2B63 E;  2JA5 E;  5IP9 E;  3M4O E;  2VUM E;  2NVT E;  5M3F E;  3I4N E;  3K7A E;  1Y1V E;  3FKI E;  3HOV E;  4BXX E;  1TWC E;  4A3C E;  4C3I E;  1SFO E;  2E2H E;  2JA8 E;  3PO2 E;  4A3J E;  3HOW E;  3RZO E;  5C4X E;  3S1M E;  3PO3 E;  2JA6 E;  3S1R E;  3GTO E;  2WAQ H;  2R93 E;  3M3Y E;  2NVQ E;  3HOY E;  4A3K E;  3GTJ E;  4X6A E;  4Y52 E;  3RZD E;  3S2D E;  3HOZ E;  4BY7 E;  5C44 E;  5C4J E;  2WB1 H;  4C2M E;  1Y1W E;  2YU9 E;  3S1N E;  4A3L E;  1I6H E;  5M5X E;  5IYD E;  4AYB H;  1TWF E;  3GTG E;  3GTM E;  4BBR E;  3CQZ E;  1EIK A;  5M3M E;  4C3J E;  3GTP E;  2JA7 E;  1TWA E;  2NVY E;  3HKZ H;  2R7Z E;  5M5Y E;  1DZF A;  3GTQ E;  4A3D E;  1I50 E;  1TWH E;  4Y7N E;  4A3E E;  2E2J E;  3S14 E;  1R9T E;  3H0G E;  3S16 E;  5FJ8 E;  4A3G E;  2Y0S H;  4A3B E;  5IP7 E;  3S2H E;  3HOX E;  3S1Q E;  3HOU E;  1K83 E;  3S15 E; 
#chains in the Genus database with same CATH topology
 2E2I F;  4BY1 F;  5IYB E;  2R92 F;  5C3E E;  5TMC E;  1WCM E;  1QKL A;  4G7Z E;  4OIP E;  2NVX F;  3S2H F;  4BBS F;  3S1Q F;  4QIW H;  3I4M E;  4OIO E;  3H3V F;  4A3M F;  1I3Q F;  2B63 F;  5FLM E;  2JA5 F;  4Q5S E;  4OIN E;  4C3H E;  4A3F E;  5IP9 F;  3H3V G;  2VUM F;  1ZYR E;  3M4O F;  4XSX E;  5M3F F;  3I4N F;  5IYC E;  5M5W E;  4A3I E;  3K7A F;  4MQ9 E;  3FKI F;  4XSZ E;  3HOV F;  1TWC F;  4BXX F;  4KMU E;  4A3C F;  4LLG E;  3WOD E;  3GTL E;  3S17 E;  2PMZ H;  1SFO F;  2E2H F;  2JA8 F;  3PO2 F;  4ZH4 E;  4A93 E;  1TWG E;  2E2I E;  4BY1 E;  2R92 E;  4MEY E;  3HOW F;  3GTK E;  4GZY E;  3RZO F;  2NVX E;  4BBS E;  5C4X F;  3GTL F;  3S1M F;  4G7O E;  3PO3 F;  2WB1 I;  4A3M E;  2A6H E;  1I3Q E;  2B63 E;  2JA6 F;  3S1R F;  2JA5 E;  3GTO F;  2KRX A;  5IP9 E;  2WAQ K;  3M4O E;  2VUM E;  4KN4 E;  2NVT E;  3GTK F;  5M3F E;  3I4N E;  4OIQ E;  3M3Y F;  2R93 F;  3K7A E;  1Y1V E;  3FKI E;  3HOV E;  4BXX E;  1TWC E;  3GTJ F;  4A3K F;  4Y52 F;  2NVQ F;  4A3C E;  4C3I E;  2NVT F;  3RZD F;  1SFO E;  2E2H E;  2JA8 E;  3HOZ F;  5BYH E;  3PO2 E;  4BY7 F;  3S2D F;  1Y1V F;  4A3J E;  5C44 F;  3HOW E;  4YG2 E;  5C4J F;  2O5I E;  3RZO E;  2A69 E;  4XLP E;  5C4X E;  3S1M E;  4C2M F;  4C3I F;  1Y1W F;  2YU9 F;  5IPL E;  3PO3 E;  2JA6 E;  4A3L F;  3S1R E;  5M5X F;  3GTO E;  1I6H F;  4A3J F;  4AYB K;  2WAQ H;  1TWF F;  2R93 E;  3GTG F;  2A68 E;  3M3Y E;  4Q4Z E;  3CQZ F;  4BBR F;  3GTM F;  4OIR E;  2NVQ E;  3HOY E;  4A3K E;  3GTJ E;  4X6A E;  4C3J F;  4Y52 E;  3GTP F;  3HOY F;  5TMF E;  1YNN K;  2JA7 F;  3RZD E;  1TWA F;  3S2D E;  3HOZ E;  2NVY F;  4BY7 E;  3HKZ K;  2Y0S I;  5C44 E;  2R7Z F;  4YFK E;  5C4J E;  1IW7 E;  2WB1 H;  1SMY E;  5M5Y F;  2PPB E;  5E17 E;  4C2M E;  3GTQ F;  4A3D F;  1Y1W E;  2YU9 E;  1I50 F;  3S1N E;  4A3L E;  1TWH F;  4XLN E;  5D4C E;  1I6H E;  5M5X E;  4YFX E;  5IYD E;  4Y7N F;  4LJZ E;  4A3E F;  4AYB H;  1TWF E;  2E2J F;  3S14 F;  3GTG E;  3GTM E;  4BBR E;  3H0G F;  3CQZ E;  4LK1 E;  1R9T F;  1EIK A;  5M3M E;  3S1N F;  4C3J E;  3GTP E;  1I6V E;  4G7H E;  3S16 F;  5IYD F;  5FJ8 F;  4X6A F;  4A3G F;  2JA7 E;  1HQM E;  1TWA E;  4A3B F;  4KN7 E;  5IP7 F;  2NVY E;  3HKZ H;  5M3M F;  3HOX F;  2R7Z E;  2A6E E;  3HOU F;  4YFN E;  5M5Y E;  1K83 F;  1DZF A;  4JK1 E;  3S15 F;  3GTQ E;  4A3D E;  1I50 E;  5D4E E;  1TWH E;  5IYB F;  5C3E F;  1WCM F;  4Y7N E;  2CW0 E;  4A3E E;  5E18 E;  2E2J E;  4QIW K;  3S14 E;  3I4M F;  1R9T E;  3H0G E;  2BE5 E;  5FLM F;  4C3H F;  4A3F F;  1YNJ K;  3S16 E;  5FJ8 E;  4MEX E;  5IYC F;  5M5W F;  5D4D E;  4A3I F;  4A3G E;  3DXJ E;  2Y0S H;  4A3B E;  5IP7 E;  3S2H E;  4LK0 E;  3HOX E;  3EQL E;  3S1Q E;  3HOU E;  2PMZ K;  3S17 F;  2O5J E;  1K83 E;  3S15 E;  4A93 F;  1TWG F; 
#chains in the Genus database with same CATH homology
 5IYB E;  5C3E E;  1WCM E;  4QIW H;  3I4M E;  3H3V F;  5FLM E;  4C3H E;  4A3F E;  5IYC E;  5M5W E;  4A3I E;  3GTL E;  3S17 E;  2PMZ H;  4A93 E;  1TWG E;  2E2I E;  4BY1 E;  2R92 E;  3GTK E;  2NVX E;  4BBS E;  4A3M E;  1I3Q E;  2B63 E;  2JA5 E;  5IP9 E;  3M4O E;  2VUM E;  2NVT E;  5M3F E;  3I4N E;  3K7A E;  1Y1V E;  3FKI E;  3HOV E;  4BXX E;  1TWC E;  4A3C E;  4C3I E;  1SFO E;  2E2H E;  2JA8 E;  3PO2 E;  4A3J E;  3HOW E;  3RZO E;  5C4X E;  3S1M E;  3PO3 E;  2JA6 E;  3S1R E;  3GTO E;  2WAQ H;  2R93 E;  3M3Y E;  2NVQ E;  3HOY E;  4A3K E;  3GTJ E;  4X6A E;  4Y52 E;  3RZD E;  3S2D E;  3HOZ E;  4BY7 E;  5C44 E;  5C4J E;  2WB1 H;  4C2M E;  1Y1W E;  2YU9 E;  3S1N E;  4A3L E;  1I6H E;  5M5X E;  5IYD E;  4AYB H;  1TWF E;  3GTG E;  3GTM E;  4BBR E;  3CQZ E;  1EIK A;  5M3M E;  4C3J E;  3GTP E;  2JA7 E;  1TWA E;  2NVY E;  3HKZ H;  2R7Z E;  5M5Y E;  1DZF A;  3GTQ E;  4A3D E;  1I50 E;  1TWH E;  4Y7N E;  4A3E E;  2E2J E;  3S14 E;  1R9T E;  3H0G E;  3S16 E;  5FJ8 E;  4A3G E;  2Y0S H;  4A3B E;  5IP7 E;  3S2H E;  3HOX E;  3S1Q E;  3HOU E;  1K83 E;  3S15 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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