4C6GA

Structural investigations into the stereochemistry and activity of a phenylalanine-2,3-aminomutase from taxus chinensis
Total Genus 252
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
252
sequence length
669
structure length
624
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEACRARVETCSSWVQRKAEDGADIYGLQESLIRCLLAGVFTDELPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSASGDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVAGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHTDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PHENYLALANINE AMMONIA-LYASE
publication title Structural Investigations Into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus Chinensis.
pubmed doi rcsb
source organism Taxus wallichiana var. chinensis
total genus 252
structure length 624
sequence length 669
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2013-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4c6gA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4c6gA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4c6gA02
3QBPA 3KDZA 3R6YA 3KDYA 5HW2A 1KQ7A 5F92A 4EEIA 1C3CA 3R6QA 2X75A 2OHYA 1C3UA 1JSWA 1TJ7A 3RD8A 1U15A 1DCNA 2O7FA 2E9FA 1YFEA 4V2RA 1T6PA 3UNVA 1EB4A 4BABA 1W27A 1HY1A 4FFXA 4EFCA 4C5UA 1I0AA 2O6YA 2PTSA 4V2QA 2YIIA 4CQ5A 5EYVA 3TV2A 3NZ4A 1XWOA 1YISA 3OCFA 1HY0A 1FUOA 2HVGA 1FURA 3OCEA 5EYTA 5D6BA 2VD6A 4MX2A 2NYNA 3BHGA 4NLEA 1GKMA 1GK3A 1T6JA 2PFMA 1Y2MA 1J3UA 4FLCA 2QGAB 1FUQA 2PTQA 1Q5NA 4ADMA 1DOFA 1GKJA 1AUWA 1U16A 3RRPA 4HGVA 5F91A 3E04A 4APAA 2PTRA 4ADLA 1RE5A 3R6VA 4C5SA 3NO9A 3GZHA 1TJWA 1K62A 1TJUA 4APBA 1K7WA 1VDKA 1B8FA 2O7BA 1TJVA 2QVEA 2O78A 4BAAA 2J91A 2O7EA 2NYFA 3CZOA 3C8TA 4NSLA 1GK2A 2RJSA 1FUPA 4C5RA 2FUSA 4C6GA 1YFMA 2O7DA 3GTDA 2RJRA
chains in the Genus database with same CATH superfamily
3QBPA 1TWAA 3KDZA 2JA5A 2HROA 3EZBA 3R6YA 1ZYRD 3U44A 2EZBA 3KDYA 2FELA 5HW2A 1KQ7A 5F92A 2BE5D 2NVYA 4WNLA 2VK9A 5M0IA 4EEIA 2CW0D 1I50A 1C3CA 3R6QA 2FIPA 2OHYA 1C3UA 1JSWA 2NVXA 1TJ7A 2X75A 2A69D 3GTLA 1U15A 3FKIA 3RD8A 1DCNA 2E9FA 2O7FA 5IZ2A 2EZCA 1YFEA 4V2RA 1Y1WA 1T6PA 2EZAA 4C2MA 1XMCA 3UNVA 4CEIA 1I6VD 1EB4A 4BABA 2MP0A 1W27A 1HY1A 2R93A 2MX9A 4FFXA 4EFCA 4C5UA 1I0AA 4A15A 2O6YA 2PTSA 1XL8A 4V2QA 2YIIA 4CQ5A 1K83A 2N3EA 1EZBA 1EZAA 1TWFA 5EYVA 2A6ED 3TV2A 3NZ4A 3GTGA 1XMDA 2MX8A 1XWOA 1YISA 1YNND 3OCFA 1R9TA 3GTKA 2VL7A 2YU9A 3CQZA 3LRDA 1TWCA 2VUMA 1HY0A 1XL7A 4QIWA 1FUOA 2HVGA 1FURA 3OCEA 2HWGA 3CRW1 5EYTA 2A6HD 5D6BA 1I3QA 2VD6A 2LYIA 2JA7A 4MX2A 3GTQA 2NYNA 3BHGA 1ZYMA 4NLEA 1GKMA 1GK3A 1T6JA 2X0QA 3EZAA 3U4QA 3GTOA 3LR6A 2R92A 2PFMA 1HQMD 5H8WA 4CEJA 1Y2MA 2O5JD 2VSFA 2K3NA 1J3UA 3CRVA 2K3QA 3GTJA 4FLCA 2QGAB 2K3OA 1FUQA 2N1DB 2X0PA 2PTQA 1TWHA 2MQAA 1Q5NA 4ADMA 1DOFA 1GKJA 1AUWA 1SMYD 2AQLA 3GTPA 1U16A 3RRPA 2LTHA 1XLYA 4HGVA 2FENA 5F91A 3E04A 4APAA 2PTRA 1YNJD 4ADLA 3LR2A 2JA6A 1RE5A 4C5SA 3NO9A 3GZHA 1TJWA 1K62A 1TJUA 3R6VA 3EZEA 1SFOA 2LPIA 1TWGA 3GTMA 4APBA 1WCMA 1K7WA 1VDKA 2R7ZA 2FIOA 1B8FA 2O7BA 2LPJA 3H0GA 2LKMB 3LR8A 2E2HA 2E2IA 2A68D 2X0OA 2B63A 1TJVA 2QVEA 2O78A 4BAAA 2J91A 2O7EA 2F5JA 4CEHA 2NYFA 5M0JA 2Y0NA 3CZOA 3C8TA 4NSLA 1GK2A 2RJSA 1IW7D 1FUPA 4C5RA 2FUSA 4C6GA 1Y1VA 1YFMA 2O7DA 3GTDA 4FBSA 2RJRA
chains in the Genus database with same CATH topology
3QBPA 3KDZA 3R6YA 3KDYA 5HW2A 1KQ7A 5F92A 4EEIA 1C3CA 3R6QA 2X75A 2OHYA 1C3UA 1JSWA 1TJ7A 3RD8A 1U15A 1DCNA 2O7FA 2E9FA 1YFEA 4V2RA 1T6PA 3UNVA 1EB4A 4BABA 1W27A 1HY1A 4FFXA 4EFCA 4C5UA 1I0AA 2O6YA 2PTSA 4V2QA 2YIIA 4CQ5A 5EYVA 3TV2A 3NZ4A 1XWOA 1YISA 3OCFA 1HY0A 1FUOA 2HVGA 1FURA 3OCEA 5EYTA 5D6BA 2VD6A 4MX2A 2NYNA 3BHGA 4NLEA 1GKMA 1GK3A 1T6JA 2PFMA 1Y2MA 1J3UA 4FLCA 2QGAB 1FUQA 2PTQA 1Q5NA 4ADMA 1DOFA 1GKJA 1AUWA 1U16A 3RRPA 4HGVA 5F91A 3E04A 4APAA 2PTRA 4ADLA 1RE5A 3R6VA 4C5SA 3NO9A 3GZHA 1TJWA 1K62A 1TJUA 4APBA 1K7WA 1VDKA 1B8FA 2O7BA 1TJVA 2QVEA 2O78A 4BAAA 2J91A 2O7EA 2NYFA 3CZOA 3C8TA 4NSLA 1GK2A 2RJSA 1FUPA 4C5RA 2FUSA 4C6GA 1YFMA 2O7DA 3GTDA 2RJRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QBP A;  3KDZ A;  3R6Y A;  3KDY A;  5HW2 A;  1KQ7 A;  5F92 A;  4EEI A;  1C3C A;  3R6Q A;  2X75 A;  2OHY A;  1C3U A;  1JSW A;  1TJ7 A;  3RD8 A;  1U15 A;  1DCN A;  2O7F A;  2E9F A;  1YFE A;  4V2R A;  1T6P A;  3UNV A;  1EB4 A;  4BAB A;  1W27 A;  1HY1 A;  4FFX A;  4EFC A;  4C5U A;  1I0A A;  2O6Y A;  2PTS A;  4V2Q A;  2YII A;  4CQ5 A;  5EYV A;  3TV2 A;  3NZ4 A;  1XWO A;  1YIS A;  3OCF A;  1HY0 A;  1FUO A;  2HVG A;  1FUR A;  3OCE A;  5EYT A;  5D6B A;  2VD6 A;  4MX2 A;  2NYN A;  3BHG A;  4NLE A;  1GKM A;  1GK3 A;  1T6J A;  2PFM A;  1Y2M A;  1J3U A;  4FLC A;  2QGA B;  1FUQ A;  2PTQ A;  1Q5N A;  4ADM A;  1DOF A;  1GKJ A;  1AUW A;  1U16 A;  3RRP A;  4HGV A;  5F91 A;  3E04 A;  4APA A;  2PTR A;  4ADL A;  1RE5 A;  3R6V A;  4C5S A;  3NO9 A;  3GZH A;  1TJW A;  1K62 A;  1TJU A;  4APB A;  1K7W A;  1VDK A;  1B8F A;  2O7B A;  1TJV A;  2QVE A;  2O78 A;  4BAA A;  2J91 A;  2O7E A;  2NYF A;  3CZO A;  3C8T A;  4NSL A;  1GK2 A;  2RJS A;  1FUP A;  4C5R A;  2FUS A;  4C6G A;  1YFM A;  2O7D A;  3GTD A;  2RJR A; 
#chains in the Genus database with same CATH topology
 3QBP A;  1TWA A;  3KDZ A;  2JA5 A;  2HRO A;  3EZB A;  3R6Y A;  1ZYR D;  3U44 A;  2EZB A;  3KDY A;  2FEL A;  5HW2 A;  1KQ7 A;  5F92 A;  2BE5 D;  2NVY A;  4WNL A;  2VK9 A;  5M0I A;  4EEI A;  2CW0 D;  1I50 A;  1C3C A;  3R6Q A;  2FIP A;  2OHY A;  1C3U A;  1JSW A;  2NVX A;  1TJ7 A;  2X75 A;  2A69 D;  3GTL A;  1U15 A;  3FKI A;  3RD8 A;  1DCN A;  2E9F A;  2O7F A;  5IZ2 A;  2EZC A;  1YFE A;  4V2R A;  1Y1W A;  1T6P A;  2EZA A;  4C2M A;  1XMC A;  3UNV A;  4CEI A;  1I6V D;  1EB4 A;  4BAB A;  2MP0 A;  1W27 A;  1HY1 A;  2R93 A;  2MX9 A;  4FFX A;  4EFC A;  4C5U A;  1I0A A;  4A15 A;  2O6Y A;  2PTS A;  1XL8 A;  4V2Q A;  2YII A;  4CQ5 A;  1K83 A;  2N3E A;  1EZB A;  1EZA A;  1TWF A;  5EYV A;  2A6E D;  3TV2 A;  3NZ4 A;  3GTG A;  1XMD A;  2MX8 A;  1XWO A;  1YIS A;  1YNN D;  3OCF A;  1R9T A;  3GTK A;  2VL7 A;  2YU9 A;  3CQZ A;  3LRD A;  1TWC A;  2VUM A;  1HY0 A;  1XL7 A;  4QIW A;  1FUO A;  2HVG A;  1FUR A;  3OCE A;  2HWG A;  3CRW 1;  5EYT A;  2A6H D;  5D6B A;  1I3Q A;  2VD6 A;  2LYI A;  2JA7 A;  4MX2 A;  3GTQ A;  2NYN A;  3BHG A;  1ZYM A;  4NLE A;  1GKM A;  1GK3 A;  1T6J A;  2X0Q A;  3EZA A;  3U4Q A;  3GTO A;  3LR6 A;  2R92 A;  2PFM A;  1HQM D;  5H8W A;  4CEJ A;  1Y2M A;  2O5J D;  2VSF A;  2K3N A;  1J3U A;  3CRV A;  2K3Q A;  3GTJ A;  4FLC A;  2QGA B;  2K3O A;  1FUQ A;  2N1D B;  2X0P A;  2PTQ A;  1TWH A;  2MQA A;  1Q5N A;  4ADM A;  1DOF A;  1GKJ A;  1AUW A;  1SMY D;  2AQL A;  3GTP A;  1U16 A;  3RRP A;  2LTH A;  1XLY A;  4HGV A;  2FEN A;  5F91 A;  3E04 A;  4APA A;  2PTR A;  1YNJ D;  4ADL A;  3LR2 A;  2JA6 A;  1RE5 A;  4C5S A;  3NO9 A;  3GZH A;  1TJW A;  1K62 A;  1TJU A;  3R6V A;  3EZE A;  1SFO A;  2LPI A;  1TWG A;  3GTM A;  4APB A;  1WCM A;  1K7W A;  1VDK A;  2R7Z A;  2FIO A;  1B8F A;  2O7B A;  2LPJ A;  3H0G A;  2LKM B;  3LR8 A;  2E2H A;  2E2I A;  2A68 D;  2X0O A;  2B63 A;  1TJV A;  2QVE A;  2O78 A;  4BAA A;  2J91 A;  2O7E A;  2F5J A;  4CEH A;  2NYF A;  5M0J A;  2Y0N A;  3CZO A;  3C8T A;  4NSL A;  1GK2 A;  2RJS A;  1IW7 D;  1FUP A;  4C5R A;  2FUS A;  4C6G A;  1Y1V A;  1YFM A;  2O7D A;  3GTD A;  4FBS A;  2RJR A; 
#chains in the Genus database with same CATH homology
 3QBP A;  3KDZ A;  3R6Y A;  3KDY A;  5HW2 A;  1KQ7 A;  5F92 A;  4EEI A;  1C3C A;  3R6Q A;  2X75 A;  2OHY A;  1C3U A;  1JSW A;  1TJ7 A;  3RD8 A;  1U15 A;  1DCN A;  2O7F A;  2E9F A;  1YFE A;  4V2R A;  1T6P A;  3UNV A;  1EB4 A;  4BAB A;  1W27 A;  1HY1 A;  4FFX A;  4EFC A;  4C5U A;  1I0A A;  2O6Y A;  2PTS A;  4V2Q A;  2YII A;  4CQ5 A;  5EYV A;  3TV2 A;  3NZ4 A;  1XWO A;  1YIS A;  3OCF A;  1HY0 A;  1FUO A;  2HVG A;  1FUR A;  3OCE A;  5EYT A;  5D6B A;  2VD6 A;  4MX2 A;  2NYN A;  3BHG A;  4NLE A;  1GKM A;  1GK3 A;  1T6J A;  2PFM A;  1Y2M A;  1J3U A;  4FLC A;  2QGA B;  1FUQ A;  2PTQ A;  1Q5N A;  4ADM A;  1DOF A;  1GKJ A;  1AUW A;  1U16 A;  3RRP A;  4HGV A;  5F91 A;  3E04 A;  4APA A;  2PTR A;  4ADL A;  1RE5 A;  3R6V A;  4C5S A;  3NO9 A;  3GZH A;  1TJW A;  1K62 A;  1TJU A;  4APB A;  1K7W A;  1VDK A;  1B8F A;  2O7B A;  1TJV A;  2QVE A;  2O78 A;  4BAA A;  2J91 A;  2O7E A;  2NYF A;  3CZO A;  3C8T A;  4NSL A;  1GK2 A;  2RJS A;  1FUP A;  4C5R A;  2FUS A;  4C6G A;  1YFM A;  2O7D A;  3GTD A;  2RJR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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