4C8PA

Mouse znrf3 ectodomain crystal form v, disulfide-bridged s90c variant
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
151
structure length
144
Chain Sequence
ETAFVEVVLFESSPSGDYTTHTTGLTGRFSRAGAMLCAEGEIVQMHPLGLCLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Mus musculus
total genus 38
structure length 144
sequence length 151
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c8pA00
2EK9A 5D29A 3D7HA 4P4EA 1CX8A 1WVMA 3FEDA 4OC4A 4C8UA 4P4JA 4C9EA 4NGSA 4OC3A 1XF1A 2XEGA 4CDKA 2XEFA 2JBJA 4P4DA 3IWWA 3FF3A 4JZ0A 4NGTA 3KASA 4CDJA 2C6CA 4JYWA 4C8CA 2C6GA 2OR4A 3ICUA 2XEIA 5ELYA 3I74A 2C6PA 3D7GA 3BHXA 4OC0A 2PVWA 4P4IA 4NGQA 3BI1A 4LQGA 4NGNA 4C9RA 4C85A 4P4BA 3SJXA 4C8TA 4TJXA 3FECA 5IB9A 4TWEA 2EK8A 1Z8LA 4NGPA 4C99A 4OC5A 3EIFA 4C8PA 3D7DA 1V6CA 4MCSA 3SJEA 4P4FA 4P45A 3S9NA 2CIJA 4C9VA 3S9LA 2PVVA 4MCPA 3SJGA 4NGMA 4TJVA 4C8FA 3D7FA 1Y9ZA 4NGRA 2OOTA 3SJFA 3VTAA 4OC2A 3FEEA 4W9YA 4C9AA 4C8AA 3BXMA 4C86A 2JBKA 3I6SA 3S9MA 4KNGE 4YN3A 4X3RA 4P44A 4MCRA 4C9UA 4OMEA 3RBUA 4MCQA 1DE4C 3BI0A 4OC1A 2XEJA 4C84A 5F09A 3IIBA
chains in the Genus database with same CATH superfamily
2EK9A 5D29A 2AUNA 3D7HA 4COGA 4P4EA 1CX8A 2D0OA 1WVMA 3FEDA 4OC4A 4C8UA 2AUMA 2YJVA 1JDBC 4P4JA 4JVOA 4H1HA 5F5XA 3K9TA 4C9EA 4NGSA 3TLGA 4OC3A 3U1BA 1XF1A 1C30B 3C8OA 2XEGA 4CDKA 2XEFA 2JBJA 4P4DA 4J0NA 3IWWA 3FF3A 4E94A 2MP0A 1M6VB 4IIYA 4JZ0A 3NOJA 1GGOA 4NGTA 1ZRSA 3KASA 4CDJA 2C6CA 2X0SA 4JYWA 3TLBA 4C8CA 2C6GA 3GJZA 3TYXA 1ZL0A 2OR4A 2C5QA 3ICUA 3TLGB 3TLAA 4CZ1A 5F9MA 2XEIA 5IR2A 5ELYA 3I74A 2C6PA 1A9XB 3D7GA 4M8DA 1KBLA 3BHXA 1CE8B 1VBHA 1NXJA 2HWGA 2PVWA 4NGQA 4OC0A 4P4IA 4CO9A 4MI1A 3BI1A 4LQGA 4NGNA 2EZCA 4C9RA 4C85A 4P4BA 3SJXA 3T05A 4C8TA 2PCNA 2DIKA 4TJXA 3FECA 3T0TA 5IB9A 3TLCA 1BXRB 1Q5XA 5F1YA 4TWEA 4EYSA 2EK8A 1Z8LA 4NGPA 2EZBA 4OC5A 4C99A 3EIFA 4C8PA 3D7DA 1NBWA 1V6CA 4MCSA 3SJEA 3EZEA 1CS0B 4P4FA 1JDEA 2GP4A 4P45A 3S9NA 2CIJA 4C9VA 3TLZA 2PVVA 3S9LA 4MCPA 1KEEB 2E28A 3SJGA 4IIXA 1C3OB 1J3LA 2YJTA 4INJA 3K4IA 2EZAA 3T07A 5JYBA 5JVLA 4NGMA 4TJVA 4C8FA 1KC7A 3D7FA 1Y9ZA 4NGRA 2OOTA 3SJFA 3VTAA 3FEEA 2FM4A 4OC2A 3EZAA 4W9YA 3SR3A 3TLYA 2OLSA 4C8AA 3BXMA 4C86A 2D0PA 2JBKA 1EZAA 3I6SA 1DIKA 3S9MA 4KNGE 2HROA 4YN3A 3G23A 1T36B 4X3RA 1EZBA 4E5SA 3KRVA 4P44A 4MCRA 4C9UA 4OMEA 5FD8A 3TLEA 3T5MA 4COBA 5K99A 3RBUA 2R82A 4MCQA 1VI4A 1DE4C 3BI0A 4OC1A 1ZYMA 2XEJA 1VBGA 4C9AA 4C84A 5F09A 2HI6A 4MJXA 3IIBA 1R61A 2B0AA 3EZBA
chains in the Genus database with same CATH topology
2EK9A 5D29A 3D7HA 4P4EA 1CX8A 1WVMA 3FEDA 4OC4A 4C8UA 4P4JA 4C9EA 3K9TA 4NGSA 4OC3A 1XF1A 2XEGA 4CDKA 2XEFA 2JBJA 4P4DA 3IWWA 3FF3A 4JZ0A 4NGTA 3KASA 4CDJA 2C6CA 4JYWA 4C8CA 2C6GA 2OR4A 2C5QA 3ICUA 2XEIA 5IR2A 5ELYA 3I74A 2C6PA 3D7GA 3BHXA 4OC0A 2PVWA 4P4IA 4NGQA 3BI1A 4LQGA 4NGNA 4C9RA 4C85A 4P4BA 3SJXA 4C8TA 4TJXA 3FECA 5IB9A 4TWEA 2EK8A 1Z8LA 4NGPA 4C99A 4OC5A 3EIFA 4C8PA 3D7DA 1V6CA 4MCSA 3SJEA 4P4FA 2GP4A 4P45A 3S9NA 2CIJA 4C9VA 3S9LA 2PVVA 4MCPA 3SJGA 4NGMA 4TJVA 4C8FA 3D7FA 1Y9ZA 4NGRA 2OOTA 3SJFA 3VTAA 4OC2A 3FEEA 4W9YA 4C9AA 4C8AA 3BXMA 4C86A 2JBKA 3I6SA 3S9MA 4KNGE 4YN3A 4X3RA 4P44A 4MCRA 4C9UA 4OMEA 3RBUA 4MCQA 1DE4C 3BI0A 4OC1A 2XEJA 4C84A 5F09A 3IIBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EK9 A;  5D29 A;  3D7H A;  4P4E A;  1CX8 A;  1WVM A;  3FED A;  4OC4 A;  4C8U A;  4P4J A;  4C9E A;  4NGS A;  4OC3 A;  1XF1 A;  2XEG A;  4CDK A;  2XEF A;  2JBJ A;  4P4D A;  3IWW A;  3FF3 A;  4JZ0 A;  4NGT A;  3KAS A;  4CDJ A;  2C6C A;  4JYW A;  4C8C A;  2C6G A;  2OR4 A;  3ICU A;  2XEI A;  5ELY A;  3I74 A;  2C6P A;  3D7G A;  3BHX A;  4OC0 A;  2PVW A;  4P4I A;  4NGQ A;  3BI1 A;  4LQG A;  4NGN A;  4C9R A;  4C85 A;  4P4B A;  3SJX A;  4C8T A;  4TJX A;  3FEC A;  5IB9 A;  4TWE A;  2EK8 A;  1Z8L A;  4NGP A;  4C99 A;  4OC5 A;  3EIF A;  4C8P A;  3D7D A;  1V6C A;  4MCS A;  3SJE A;  4P4F A;  4P45 A;  3S9N A;  2CIJ A;  4C9V A;  3S9L A;  2PVV A;  4MCP A;  3SJG A;  4NGM A;  4TJV A;  4C8F A;  3D7F A;  1Y9Z A;  4NGR A;  2OOT A;  3SJF A;  3VTA A;  4OC2 A;  3FEE A;  4W9Y A;  4C9A A;  4C8A A;  3BXM A;  4C86 A;  2JBK A;  3I6S A;  3S9M A;  4KNG E;  4YN3 A;  4X3R A;  4P44 A;  4MCR A;  4C9U A;  4OME A;  3RBU A;  4MCQ A;  1DE4 C;  3BI0 A;  4OC1 A;  2XEJ A;  4C84 A;  5F09 A;  3IIB A; 
#chains in the Genus database with same CATH topology
 2EK9 A;  5D29 A;  2AUN A;  3D7H A;  4COG A;  4P4E A;  1CX8 A;  2D0O A;  1WVM A;  3FED A;  4OC4 A;  4C8U A;  2AUM A;  2YJV A;  1JDB C;  4P4J A;  4JVO A;  4H1H A;  5F5X A;  3K9T A;  4C9E A;  4NGS A;  3TLG A;  4OC3 A;  3U1B A;  1XF1 A;  1C30 B;  3C8O A;  2XEG A;  4CDK A;  2XEF A;  2JBJ A;  4P4D A;  4J0N A;  3IWW A;  3FF3 A;  4E94 A;  2MP0 A;  1M6V B;  4IIY A;  4JZ0 A;  3NOJ A;  1GGO A;  4NGT A;  1ZRS A;  3KAS A;  4CDJ A;  2C6C A;  2X0S A;  4JYW A;  3TLB A;  4C8C A;  2C6G A;  3GJZ A;  3TYX A;  1ZL0 A;  2OR4 A;  2C5Q A;  3ICU A;  3TLG B;  3TLA A;  4CZ1 A;  5F9M A;  2XEI A;  5IR2 A;  5ELY A;  3I74 A;  2C6P A;  1A9X B;  3D7G A;  4M8D A;  1KBL A;  3BHX A;  1CE8 B;  1VBH A;  1NXJ A;  2HWG A;  2PVW A;  4NGQ A;  4OC0 A;  4P4I A;  4CO9 A;  4MI1 A;  3BI1 A;  4LQG A;  4NGN A;  2EZC A;  4C9R A;  4C85 A;  4P4B A;  3SJX A;  3T05 A;  4C8T A;  2PCN A;  2DIK A;  4TJX A;  3FEC A;  3T0T A;  5IB9 A;  3TLC A;  1BXR B;  1Q5X A;  5F1Y A;  4TWE A;  4EYS A;  2EK8 A;  1Z8L A;  4NGP A;  2EZB A;  4OC5 A;  4C99 A;  3EIF A;  4C8P A;  3D7D A;  1NBW A;  1V6C A;  4MCS A;  3SJE A;  3EZE A;  1CS0 B;  4P4F A;  1JDE A;  2GP4 A;  4P45 A;  3S9N A;  2CIJ A;  4C9V A;  3TLZ A;  2PVV A;  3S9L A;  4MCP A;  1KEE B;  2E28 A;  3SJG A;  4IIX A;  1C3O B;  1J3L A;  2YJT A;  4INJ A;  3K4I A;  2EZA A;  3T07 A;  5JYB A;  5JVL A;  4NGM A;  4TJV A;  4C8F A;  1KC7 A;  3D7F A;  1Y9Z A;  4NGR A;  2OOT A;  3SJF A;  3VTA A;  3FEE A;  2FM4 A;  4OC2 A;  3EZA A;  4W9Y A;  3SR3 A;  3TLY A;  2OLS A;  4C8A A;  3BXM A;  4C86 A;  2D0P A;  2JBK A;  1EZA A;  3I6S A;  1DIK A;  3S9M A;  4KNG E;  2HRO A;  4YN3 A;  3G23 A;  1T36 B;  4X3R A;  1EZB A;  4E5S A;  3KRV A;  4P44 A;  4MCR A;  4C9U A;  4OME A;  5FD8 A;  3TLE A;  3T5M A;  4COB A;  5K99 A;  3RBU A;  2R82 A;  4MCQ A;  1VI4 A;  1DE4 C;  3BI0 A;  4OC1 A;  1ZYM A;  2XEJ A;  1VBG A;  4C9A A;  4C84 A;  5F09 A;  2HI6 A;  4MJX A;  3IIB A;  1R61 A;  2B0A A;  3EZB A; 
#chains in the Genus database with same CATH homology
 2EK9 A;  5D29 A;  3D7H A;  4P4E A;  1CX8 A;  1WVM A;  3FED A;  4OC4 A;  4C8U A;  4P4J A;  4C9E A;  3K9T A;  4NGS A;  4OC3 A;  1XF1 A;  2XEG A;  4CDK A;  2XEF A;  2JBJ A;  4P4D A;  3IWW A;  3FF3 A;  4JZ0 A;  4NGT A;  3KAS A;  4CDJ A;  2C6C A;  4JYW A;  4C8C A;  2C6G A;  2OR4 A;  2C5Q A;  3ICU A;  2XEI A;  5IR2 A;  5ELY A;  3I74 A;  2C6P A;  3D7G A;  3BHX A;  4OC0 A;  2PVW A;  4P4I A;  4NGQ A;  3BI1 A;  4LQG A;  4NGN A;  4C9R A;  4C85 A;  4P4B A;  3SJX A;  4C8T A;  4TJX A;  3FEC A;  5IB9 A;  4TWE A;  2EK8 A;  1Z8L A;  4NGP A;  4C99 A;  4OC5 A;  3EIF A;  4C8P A;  3D7D A;  1V6C A;  4MCS A;  3SJE A;  4P4F A;  2GP4 A;  4P45 A;  3S9N A;  2CIJ A;  4C9V A;  3S9L A;  2PVV A;  4MCP A;  3SJG A;  4NGM A;  4TJV A;  4C8F A;  3D7F A;  1Y9Z A;  4NGR A;  2OOT A;  3SJF A;  3VTA A;  4OC2 A;  3FEE A;  4W9Y A;  4C9A A;  4C8A A;  3BXM A;  4C86 A;  2JBK A;  3I6S A;  3S9M A;  4KNG E;  4YN3 A;  4X3R A;  4P44 A;  4MCR A;  4C9U A;  4OME A;  3RBU A;  4MCQ A;  1DE4 C;  3BI0 A;  4OC1 A;  2XEJ A;  4C84 A;  5F09 A;  3IIB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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