4CA3A

Solution structure of streptomyces virginiae vira acp5b
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
88
structure length
88
Chain Sequence
GPGSAVAVDPAPVARALREELARTLYCEPGDIDDEASFNTLGLDSILGVEFVAFVNQTYGLDEKAGILYDHPSLAALSRHVAGRAAPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ribosomal protein
source organism Streptomyces virginiae
publication title Insights Into the Function of Trans-Acyl Transferase Polyketide Synthases from the Saxs Structure of a Complete Module.
doi rcsb
molecule keywords HYBRID POLYKETIDE SYNTHASE-NON RIBOSOMAL PEPTIDE SYNTHETASE
total genus 23
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 2013-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 4ca3A01
2LTEA 4BPHA 2CGQA 2DNWA 5HV8A 1OR5A 2MY5A 5HVCA 2KGDA 2KG6A 2FQ2A 5EJDA 2KGAA 2LKIA 2K93A 4NEOA 1AF8A 1X3OA 2MVUA 2FQ0A 3EJEA 2JGPA 2KOPA 4H2WC 2LOLA 2MR7A 4DG9A 2EHTA 2AVAA 2XZ1C 3GZLA 2FVFA 3CE7A 3EJBA 4MRTC 2LMLA 4H2YC 2KOOA 2KR5A 1HQBA 2L22A 5CZDB 2VSQA 2K2QA 2LL8A 2KGCA 2XZ0D 2FACA 5KP7B 2N5IA 5KP6B 2JU1A 3NY7B 1NQ4A 2K0XA 2KG9A 2KOQA 2AF8A 2MVVA 2KORA 2CNRA 4BPFA 2N98A 2GDWA 2L9FA 3RG2A 4R0MA 3GZMA 3LMOA 2FADA 2FHSC 2FQ1A 2N6YA 1F80D 1ACPA 2KGEA 4PXHB 1KLPA 4PWVB 2L4BA 2MR8A 2JQ4A 2MF4A 2M5RA 2MD9A 2KW2A 2ROQA 2EHSA 1HY8A 2LIWA 3EJDA 2K92A 2AFEA 2QNWA 2K94A 2CG5B 2K0YA 1T8KA 4BPGA 2AFDA 2KOSA 2N50A 5KP8B 4CA3A 2GDYA 1VKUA 4IZ6A 2GDXA 1DNYA 4H2XC 2CQ8A 4HKGA 1DV5A 2X2BA 1L0HA 2N6ZA 1L0IA 2KG8A 2FAEA 2FVEA 2L0QA 2JU2A 2KWLA 2LIUA 2LPKA 2PNGA 2N5HA 2FVAA
chains in the Genus database with same CATH superfamily
2OTJP 2CGQA 1VQLP 2JYGA 2JB0A 2KG6A 2KGAA 3G1IA 2PEJA 1EMVA 1K73Q 2LOLA 1N8RQ 4U0BA 3CC2P 1Z6MA 1YHQP 2EHTA 2AVAA 2XXMA 1YJWP 2FVFA 3CE7A 4F37A 2GZJA 1BAJA 2XT1A 4XFZA 5HGMA 1VQNP 3CCLP 2LL8A 2Z45A 1BXIA 4U0DA 1AUMA 5KP7B 2N5IA 2JU1A 4XFXA 5F2KA 3DS3A 2MVVA 2CNRA 2N98A 1VQKP 1VQ6P 1UJZA 2FQ1A 3CMAP 3G0VA 5JPAA 4PXHB 2VLPA 3U43A 2L4BA 2PY8A 4GR2A 2M5RA 2MD9A 2KW2A 1HY8A 1VQ4P 3H0DA 4U0EA 2QNWA 2K94A 2K0YA 2PENA 4BPGA 2AFDA 2N50A 4IZ6A 1DNYA 4H2XC 4HKGA 2X2BA 2XV6A 2EG5A 1L0IA 2FVEA 3HYBA 1IMQA 1Q7YQ 4GR6A 2KODA 3G1GA 2N5HA 1EIAA 2FVAA 7CEIA 2DNWA 2JYLA 3CCRP 1K30A 5HVCA 1E0HA 1FR2A 4PH1A 2M8PA 1AF8A 1X3OA 2MVUA 3EJEA 2JGPA 2VLQA 1VQ9P 3DS2A 2LF4A 2MR7A 4QNBA 1A43A 2VLOA 2XZ1C 4M0IA 3GJNA 1Q81Q 5HGLA 1KQSO 2KOOA 1S72P 2VSQA 3H4EA 1RO0A 3H47A 2XZ0D 2QEXP 1NQ4A 1YIJP 1JJ2O 1Q86Q 2JO0A 2KORA 2L9FA 2CWOA 2FADA 3CCSP 1F80D 1KLPA 2E1MA 2GZFA 1VQ8P 3DS1A 3RG6C 2LIWA 1YITP 3EJDA 3CCVP 2VLNA 2CG5B 4COPA 3CMEP 2EFJA 1AYIA 2PEKA 5KP8B 1VKUA 2M8LA 3G4SP 1RNIA 1W2BO 3NTEA 1RO2A 4UHPB 2GZEA 2KG8A 4U0FA 4IPYA 3Q20A 2WPTA 2JU2A 2LPKA 3I56P 2Z46A 5HV8A 3DPHA 1GXHA 1YI2P 2MY5A 2KGDA 2FQ2A 2BUOA 2K93A 2PEMA 3CD6P 2FQ0A 2KOPA 4H2WC 5F2NA 4U0AA 3DTJA 1KD1Q 1M90Q 4DG9A 2DGYA 1VQMP 3GZLA 1KC8Q 4XFYA 2P9XA 4MRTC 2LMLA 4H2YC 5F2OA 2L22A 3DS4A 5CZDB 1M1KQ 1M6EX 3CCQP 1Q82Q 4WYMA 3CPWO 3VRLC 2K2QA 3MGEA 2KGCA 2FACA 1QRJA 2GZIA 2NO8A 3NY7B 3DS5A 1UNKA 3B4QA 2K0XA 2KOQA 1ZNVA 1IMPA 3OW2O 2GZGA 4COCA 2GYKA 2FHSC 2N6YA 4PH0A 1VQ7P 2KGEA 2L6EA 1VQ5P 4PWVB 1YJ9P 1CEIA 2ROQA 2EHSA 2JAZA 1VHNA 2PEOA 1VQPP 3CCJP 2AFEA 3CCEP 1K9MQ 1T8KA 1NJIQ 2PEIA 2KOSA 2EIAA 3WBHA 3E2DA 2CQ8A 1DV5A 5BS1A 1L0HA 2N6ZA 1VQOP 3G6EP 3CC7P 2FAEA 2L0QA 3I55P 4XRQA 2LIUA 2LTEA 4BPHA 3CCUP 2BHVA 3G71P 5EW5E 1OR5A 4U0CA 1ZMBA 5EJDA 2LKIA 5I4TG 4NEOA 3CCMP 1D1DA 5HGNA 3G21A 4QKOA 1YJNP 3GKLC 2M8NA 3EJBA 2KR5A 1HQBA 1QVGO 5HGOA 2K0DX 2PEQA 1QVFO 4XROA 5KP6B 1GPJA 5DCKA 2K5XA 2KG9A 3LRYA 4BPFA 2AF8A 3RG2A 2GDWA 3P05A 4R0MA 3GZMA 2OARA 3M1MA 3LMOA 1E6JP 2OTLP 3G26A 1MZ8A 1ACPA 3CXCO 2MR8A 2JQ4A 2MF4A 1M74A 3DS0A 2ERHA 1IUQA 2K92A 2JBGA 3B5IA 1GXGA 3G29A 4CA3A 2ONTA 2GDYA 2GDXA 1EOQA 3CC4P 1M6NA 5BS2A 2Z44A 3HZQA 2QA4P 1A8OA 2KWLA 1K8AQ 3G28A 2PNGA
chains in the Genus database with same CATH topology
2LTEA 4BPHA 2CGQA 2DNWA 5HV8A 1OR5A 2MY5A 5HVCA 2KGDA 2KG6A 2FQ2A 5EJDA 2KGAA 2LKIA 2K93A 4NEOA 1AF8A 1X3OA 2MVUA 2FQ0A 3EJEA 2JGPA 2KOPA 4H2WC 2LOLA 2MR7A 4DG9A 2EHTA 2AVAA 2XZ1C 3GZLA 2FVFA 3CE7A 3EJBA 4MRTC 2LMLA 4H2YC 2KOOA 2KR5A 1HQBA 2L22A 5CZDB 2VSQA 2K2QA 2LL8A 2KGCA 2XZ0D 2FACA 5KP7B 2N5IA 5KP6B 2JU1A 3NY7B 1NQ4A 2K0XA 2KG9A 2KOQA 2AF8A 2MVVA 2KORA 2CNRA 4BPFA 2N98A 2GDWA 2L9FA 3RG2A 4R0MA 3GZMA 3LMOA 2FADA 2FHSC 2FQ1A 2N6YA 1F80D 1ACPA 2KGEA 4PXHB 1KLPA 4PWVB 2L4BA 2MR8A 2JQ4A 2MF4A 2M5RA 2MD9A 2KW2A 2ROQA 2EHSA 1HY8A 2LIWA 3EJDA 2K92A 2AFEA 2QNWA 2K94A 2CG5B 2K0YA 1T8KA 4BPGA 2AFDA 2KOSA 2N50A 5KP8B 4CA3A 2GDYA 1VKUA 4IZ6A 2GDXA 1DNYA 4H2XC 2CQ8A 4HKGA 1DV5A 2X2BA 1L0HA 2N6ZA 1L0IA 2KG8A 2FAEA 2FVEA 2L0QA 2JU2A 2KWLA 2LIUA 2LPKA 2PNGA 2N5HA 2FVAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LTE A;  4BPH A;  2CGQ A;  2DNW A;  5HV8 A;  1OR5 A;  2MY5 A;  5HVC A;  2KGD A;  2KG6 A;  2FQ2 A;  5EJD A;  2KGA A;  2LKI A;  2K93 A;  4NEO A;  1AF8 A;  1X3O A;  2MVU A;  2FQ0 A;  3EJE A;  2JGP A;  2KOP A;  4H2W C;  2LOL A;  2MR7 A;  4DG9 A;  2EHT A;  2AVA A;  2XZ1 C;  3GZL A;  2FVF A;  3CE7 A;  3EJB A;  4MRT C;  2LML A;  4H2Y C;  2KOO A;  2KR5 A;  1HQB A;  2L22 A;  5CZD B;  2VSQ A;  2K2Q A;  2LL8 A;  2KGC A;  2XZ0 D;  2FAC A;  5KP7 B;  2N5I A;  5KP6 B;  2JU1 A;  3NY7 B;  1NQ4 A;  2K0X A;  2KG9 A;  2KOQ A;  2AF8 A;  2MVV A;  2KOR A;  2CNR A;  4BPF A;  2N98 A;  2GDW A;  2L9F A;  3RG2 A;  4R0M A;  3GZM A;  3LMO A;  2FAD A;  2FHS C;  2FQ1 A;  2N6Y A;  1F80 D;  1ACP A;  2KGE A;  4PXH B;  1KLP A;  4PWV B;  2L4B A;  2MR8 A;  2JQ4 A;  2MF4 A;  2M5R A;  2MD9 A;  2KW2 A;  2ROQ A;  2EHS A;  1HY8 A;  2LIW A;  3EJD A;  2K92 A;  2AFE A;  2QNW A;  2K94 A;  2CG5 B;  2K0Y A;  1T8K A;  4BPG A;  2AFD A;  2KOS A;  2N50 A;  5KP8 B;  4CA3 A;  2GDY A;  1VKU A;  4IZ6 A;  2GDX A;  1DNY A;  4H2X C;  2CQ8 A;  4HKG A;  1DV5 A;  2X2B A;  1L0H A;  2N6Z A;  1L0I A;  2KG8 A;  2FAE A;  2FVE A;  2L0Q A;  2JU2 A;  2KWL A;  2LIU A;  2LPK A;  2PNG A;  2N5H A;  2FVA A; 
#chains in the Genus database with same CATH topology
 2OTJ P;  2CGQ A;  1VQL P;  2JYG A;  2JB0 A;  2KG6 A;  2KGA A;  3G1I A;  2PEJ A;  1EMV A;  1K73 Q;  2LOL A;  1N8R Q;  4U0B A;  3CC2 P;  1Z6M A;  1YHQ P;  2EHT A;  2AVA A;  2XXM A;  1YJW P;  2FVF A;  3CE7 A;  4F37 A;  2GZJ A;  1BAJ A;  2XT1 A;  4XFZ A;  5HGM A;  1VQN P;  3CCL P;  2LL8 A;  2Z45 A;  1BXI A;  4U0D A;  1AUM A;  5KP7 B;  2N5I A;  2JU1 A;  4XFX A;  5F2K A;  3DS3 A;  2MVV A;  2CNR A;  2N98 A;  1VQK P;  1VQ6 P;  1UJZ A;  2FQ1 A;  3CMA P;  3G0V A;  5JPA A;  4PXH B;  2VLP A;  3U43 A;  2L4B A;  2PY8 A;  4GR2 A;  2M5R A;  2MD9 A;  2KW2 A;  1HY8 A;  1VQ4 P;  3H0D A;  4U0E A;  2QNW A;  2K94 A;  2K0Y A;  2PEN A;  4BPG A;  2AFD A;  2N50 A;  4IZ6 A;  1DNY A;  4H2X C;  4HKG A;  2X2B A;  2XV6 A;  2EG5 A;  1L0I A;  2FVE A;  3HYB A;  1IMQ A;  1Q7Y Q;  4GR6 A;  2KOD A;  3G1G A;  2N5H A;  1EIA A;  2FVA A;  7CEI A;  2DNW A;  2JYL A;  3CCR P;  1K30 A;  5HVC A;  1E0H A;  1FR2 A;  4PH1 A;  2M8P A;  1AF8 A;  1X3O A;  2MVU A;  3EJE A;  2JGP A;  2VLQ A;  1VQ9 P;  3DS2 A;  2LF4 A;  2MR7 A;  4QNB A;  1A43 A;  2VLO A;  2XZ1 C;  4M0I A;  3GJN A;  1Q81 Q;  5HGL A;  1KQS O;  2KOO A;  1S72 P;  2VSQ A;  3H4E A;  1RO0 A;  3H47 A;  2XZ0 D;  2QEX P;  1NQ4 A;  1YIJ P;  1JJ2 O;  1Q86 Q;  2JO0 A;  2KOR A;  2L9F A;  2CWO A;  2FAD A;  3CCS P;  1F80 D;  1KLP A;  2E1M A;  2GZF A;  1VQ8 P;  3DS1 A;  3RG6 C;  2LIW A;  1YIT P;  3EJD A;  3CCV P;  2VLN A;  2CG5 B;  4COP A;  3CME P;  2EFJ A;  1AYI A;  2PEK A;  5KP8 B;  1VKU A;  2M8L A;  3G4S P;  1RNI A;  1W2B O;  3NTE A;  1RO2 A;  4UHP B;  2GZE A;  2KG8 A;  4U0F A;  4IPY A;  3Q20 A;  2WPT A;  2JU2 A;  2LPK A;  3I56 P;  2Z46 A;  5HV8 A;  3DPH A;  1GXH A;  1YI2 P;  2MY5 A;  2KGD A;  2FQ2 A;  2BUO A;  2K93 A;  2PEM A;  3CD6 P;  2FQ0 A;  2KOP A;  4H2W C;  5F2N A;  4U0A A;  3DTJ A;  1KD1 Q;  1M90 Q;  4DG9 A;  2DGY A;  1VQM P;  3GZL A;  1KC8 Q;  4XFY A;  2P9X A;  4MRT C;  2LML A;  4H2Y C;  5F2O A;  2L22 A;  3DS4 A;  5CZD B;  1M1K Q;  1M6E X;  3CCQ P;  1Q82 Q;  4WYM A;  3CPW O;  3VRL C;  2K2Q A;  3MGE A;  2KGC A;  2FAC A;  1QRJ A;  2GZI A;  2NO8 A;  3NY7 B;  3DS5 A;  1UNK A;  3B4Q A;  2K0X A;  2KOQ A;  1ZNV A;  1IMP A;  3OW2 O;  2GZG A;  4COC A;  2GYK A;  2FHS C;  2N6Y A;  4PH0 A;  1VQ7 P;  2KGE A;  2L6E A;  1VQ5 P;  4PWV B;  1YJ9 P;  1CEI A;  2ROQ A;  2EHS A;  2JAZ A;  1VHN A;  2PEO A;  1VQP P;  3CCJ P;  2AFE A;  3CCE P;  1K9M Q;  1T8K A;  1NJI Q;  2PEI A;  2KOS A;  2EIA A;  3WBH A;  3E2D A;  2CQ8 A;  1DV5 A;  5BS1 A;  1L0H A;  2N6Z A;  1VQO P;  3G6E P;  3CC7 P;  2FAE A;  2L0Q A;  3I55 P;  4XRQ A;  2LIU A;  2LTE A;  4BPH A;  3CCU P;  2BHV A;  3G71 P;  5EW5 E;  1OR5 A;  4U0C A;  1ZMB A;  5EJD A;  2LKI A;  5I4T G;  4NEO A;  3CCM P;  1D1D A;  5HGN A;  3G21 A;  4QKO A;  1YJN P;  3GKL C;  2M8N A;  3EJB A;  2KR5 A;  1HQB A;  1QVG O;  5HGO A;  2K0D X;  2PEQ A;  1QVF O;  4XRO A;  5KP6 B;  1GPJ A;  5DCK A;  2K5X A;  2KG9 A;  3LRY A;  4BPF A;  2AF8 A;  3RG2 A;  2GDW A;  3P05 A;  4R0M A;  3GZM A;  2OAR A;  3M1M A;  3LMO A;  1E6J P;  2OTL P;  3G26 A;  1MZ8 A;  1ACP A;  3CXC O;  2MR8 A;  2JQ4 A;  2MF4 A;  1M74 A;  3DS0 A;  2ERH A;  1IUQ A;  2K92 A;  2JBG A;  3B5I A;  1GXG A;  3G29 A;  4CA3 A;  2ONT A;  2GDY A;  2GDX A;  1EOQ A;  3CC4 P;  1M6N A;  5BS2 A;  2Z44 A;  3HZQ A;  2QA4 P;  1A8O A;  2KWL A;  1K8A Q;  3G28 A;  2PNG A; 
#chains in the Genus database with same CATH homology
 2LTE A;  4BPH A;  2CGQ A;  2DNW A;  5HV8 A;  1OR5 A;  2MY5 A;  5HVC A;  2KGD A;  2KG6 A;  2FQ2 A;  5EJD A;  2KGA A;  2LKI A;  2K93 A;  4NEO A;  1AF8 A;  1X3O A;  2MVU A;  2FQ0 A;  3EJE A;  2JGP A;  2KOP A;  4H2W C;  2LOL A;  2MR7 A;  4DG9 A;  2EHT A;  2AVA A;  2XZ1 C;  3GZL A;  2FVF A;  3CE7 A;  3EJB A;  4MRT C;  2LML A;  4H2Y C;  2KOO A;  2KR5 A;  1HQB A;  2L22 A;  5CZD B;  2VSQ A;  2K2Q A;  2LL8 A;  2KGC A;  2XZ0 D;  2FAC A;  5KP7 B;  2N5I A;  5KP6 B;  2JU1 A;  3NY7 B;  1NQ4 A;  2K0X A;  2KG9 A;  2KOQ A;  2AF8 A;  2MVV A;  2KOR A;  2CNR A;  4BPF A;  2N98 A;  2GDW A;  2L9F A;  3RG2 A;  4R0M A;  3GZM A;  3LMO A;  2FAD A;  2FHS C;  2FQ1 A;  2N6Y A;  1F80 D;  1ACP A;  2KGE A;  4PXH B;  1KLP A;  4PWV B;  2L4B A;  2MR8 A;  2JQ4 A;  2MF4 A;  2M5R A;  2MD9 A;  2KW2 A;  2ROQ A;  2EHS A;  1HY8 A;  2LIW A;  3EJD A;  2K92 A;  2AFE A;  2QNW A;  2K94 A;  2CG5 B;  2K0Y A;  1T8K A;  4BPG A;  2AFD A;  2KOS A;  2N50 A;  5KP8 B;  4CA3 A;  2GDY A;  1VKU A;  4IZ6 A;  2GDX A;  1DNY A;  4H2X C;  2CQ8 A;  4HKG A;  1DV5 A;  2X2B A;  1L0H A;  2N6Z A;  1L0I A;  2KG8 A;  2FAE A;  2FVE A;  2L0Q A;  2JU2 A;  2KWL A;  2LIU A;  2LPK A;  2PNG A;  2N5H A;  2FVA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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