4CABA

The refined structure of catalase dr1998 from deinococcus radiodurans at 2.6 a resolution
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
507
structure length
507
Chain Sequence
GTTLTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFFIRDALKFPDLIHSQKPSPTTNIQSQERIFDFFAGSPEATHMITLLYSPWGIPASYRFMQGSGVNTYKWVNDQGEGVLVKYHWEPVQGVRNLTQMQADEVQATNFNHATQDLHDAIERGDFPQWDLFVQIMEDGEHPELDFDPLDDTKIWPREQFPWRHVGQMTLNRNPENVFAETEQAAFGTGVLVDGLDFSDDKMLQGRTFSYSDTQRYRVGPNYLQLPINAPKKHVATNQRDGQMAYRVDTFEGQDQRVNYEPSLLSGPKEAPRRAPEHTPRVEGNLVRAAIERPNPFGQAGMQYRNFADWERDELVSNLSGALAGVDKRIQDKMLEYFTAADADYGQRVREGIQAKEAEMKGQKQEAPVYGTEASSLY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Mono-Functional Heme Catalase Dr1998 from Deinococcus Radiodurans
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords CATALASE
total genus 147
structure length 507
sequence length 507
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2013-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4cabA00
3PQ8A 1CF9A 1GWHA 1P7YA 3TTTA 1M85A 4B2YA 4QOLA 1HBZA 4B5KA 2XF2A 4ENSA 1QWMA 3VU3A 3DY5A 1QWLA 3TTUA 4ENPA 1F4JA 3PQ6A 3ZJ5A 3PQ7A 4ENTA 5BV2P 4AUEA 2XQ1A 1QWSA 1A4EA 1GWEA 1GGEA 3P9RA 1GWFA 4AUNA 3P9SA 1E93A 1GGJA 3EJ6A 4QOOA 4QOMA 4B31A 1GG9A 1GGHA 4ENUA 1U5UA 3PQ4A 4AJ9A 3TTXA 4QONA 2ISAA 2CAGA 1SY7A 1H7KA 4ENVA 4B7AA 3P9QA 3P9PA 4CABA 2J2MA 4E37A 1P7ZA 1P80A 4AULA 1SI8A 4ENRA 3TTWA 2A9EA 3PQ2A 4AUMA 4ENWA 2IQFA 4BFLA 1IPHA 1NM0A 4QORA 1GGKA 2CAHA 3HB6A 1P81A 1H6NA 2IUFA 1MQFA 1QF7A 3PQ5A 1M7SA 3ZJ4A 4QOQA 4QOPA 4BIMA 3PQ3A 4ENQA 1GGFA 3TTVA 4B40A
chains in the Genus database with same CATH superfamily
3PQ8A 1CF9A 1GWHA 1P7YA 4B7FA 3TTTA 1M85A 3J7BA 4B2YA 4QOLA 4B7GA 1TH4A 1HBZA 4B5KA 1DGGA 4BLCA 2XF2A 4ENSA 4B7HA 1QWMA 3VU3A 1DGHB 3DY5A 3E4WA 1QWLA 3TTUA 1TH2A 4ENPA 8CATA 1F4JA 1TGUA 3PQ6A 3RGPA 1DGHA 3ZJ5A 3PQ7A 3RE8A 4ENTA 5BV2P 1DGFA 4AUEA 2XQ1A 1QQWA 1QWSA 1A4EA 1GWEA 1GGEA 3P9RA 1GWFA 4AUNA 3P9SA 1DGBA 1E93A 1GGJA 3EJ6A 4QOOA 4QOMA 4B31A 1GG9A 1GGHA 3NWLA 4ENUA 1U5UA 3PQ4A 4AJ9A 3TTXA 4QONA 2ISAA 5GKNA 2CAGA 1SY7A 1H7KA 4ENVA 4B7AA 3P9QA 3P9PA 4CABA 2J2MA 4E37A 1P7ZA 1P80A 4AULA 7CATA 1SI8A 4ENRA 3RGSA 3TTWA 2A9EA 1TH3A 3E4YA 3PQ2A 4AUMA 4ENWA 2IQFA 4BFLA 1IPHA 1NM0A 4QORA 1GGKA 2CAHA 3HB6A 1P81A 1H6NA 2IUFA 1MQFA 1QF7A 3PQ5A 1M7SA 3ZJ4A 4QOQA 4QOPA 4BIMA 3PQ3A 4ENQA 1GGFA 3TTVA 4B40A
chains in the Genus database with same CATH topology
3PQ8A 1CF9A 1GWHA 1P7YA 3TTTA 1M85A 4B2YA 4QOLA 1HBZA 4B5KA 2XF2A 4ENSA 1QWMA 3VU3A 3DY5A 1QWLA 3TTUA 4ENPA 1F4JA 3PQ6A 3ZJ5A 3PQ7A 4ENTA 5BV2P 4AUEA 2XQ1A 1QWSA 1A4EA 1GWEA 1GGEA 3P9RA 1GWFA 4AUNA 3P9SA 1E93A 1GGJA 3EJ6A 4QOOA 4QOMA 4B31A 1GG9A 1GGHA 4ENUA 1U5UA 3PQ4A 4AJ9A 3TTXA 4QONA 2ISAA 2CAGA 1SY7A 1H7KA 4ENVA 4B7AA 3P9QA 3P9PA 4CABA 2J2MA 4E37A 1P7ZA 1P80A 4AULA 1SI8A 4ENRA 3TTWA 2A9EA 3PQ2A 4AUMA 4ENWA 2IQFA 4BFLA 1IPHA 1NM0A 4QORA 1GGKA 2CAHA 3HB6A 1P81A 1H6NA 2IUFA 1MQFA 1QF7A 3PQ5A 1M7SA 3ZJ4A 4QOQA 4QOPA 4BIMA 3PQ3A 4ENQA 1GGFA 3TTVA 4B40A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PQ8 A;  1CF9 A;  1GWH A;  1P7Y A;  3TTT A;  1M85 A;  4B2Y A;  4QOL A;  1HBZ A;  4B5K A;  2XF2 A;  4ENS A;  1QWM A;  3VU3 A;  3DY5 A;  1QWL A;  3TTU A;  4ENP A;  1F4J A;  3PQ6 A;  3ZJ5 A;  3PQ7 A;  4ENT A;  5BV2 P;  4AUE A;  2XQ1 A;  1QWS A;  1A4E A;  1GWE A;  1GGE A;  3P9R A;  1GWF A;  4AUN A;  3P9S A;  1E93 A;  1GGJ A;  3EJ6 A;  4QOO A;  4QOM A;  4B31 A;  1GG9 A;  1GGH A;  4ENU A;  1U5U A;  3PQ4 A;  4AJ9 A;  3TTX A;  4QON A;  2ISA A;  2CAG A;  1SY7 A;  1H7K A;  4ENV A;  4B7A A;  3P9Q A;  3P9P A;  4CAB A;  2J2M A;  4E37 A;  1P7Z A;  1P80 A;  4AUL A;  1SI8 A;  4ENR A;  3TTW A;  2A9E A;  3PQ2 A;  4AUM A;  4ENW A;  2IQF A;  4BFL A;  1IPH A;  1NM0 A;  4QOR A;  1GGK A;  2CAH A;  3HB6 A;  1P81 A;  1H6N A;  2IUF A;  1MQF A;  1QF7 A;  3PQ5 A;  1M7S A;  3ZJ4 A;  4QOQ A;  4QOP A;  4BIM A;  3PQ3 A;  4ENQ A;  1GGF A;  3TTV A;  4B40 A; 
#chains in the Genus database with same CATH topology
 3PQ8 A;  1CF9 A;  1GWH A;  1P7Y A;  4B7F A;  3TTT A;  1M85 A;  3J7B A;  4B2Y A;  4QOL A;  4B7G A;  1TH4 A;  1HBZ A;  4B5K A;  1DGG A;  4BLC A;  2XF2 A;  4ENS A;  4B7H A;  1QWM A;  3VU3 A;  1DGH B;  3DY5 A;  3E4W A;  1QWL A;  3TTU A;  1TH2 A;  4ENP A;  8CAT A;  1F4J A;  1TGU A;  3PQ6 A;  3RGP A;  1DGH A;  3ZJ5 A;  3PQ7 A;  3RE8 A;  4ENT A;  5BV2 P;  1DGF A;  4AUE A;  2XQ1 A;  1QQW A;  1QWS A;  1A4E A;  1GWE A;  1GGE A;  3P9R A;  1GWF A;  4AUN A;  3P9S A;  1DGB A;  1E93 A;  1GGJ A;  3EJ6 A;  4QOO A;  4QOM A;  4B31 A;  1GG9 A;  1GGH A;  3NWL A;  4ENU A;  1U5U A;  3PQ4 A;  4AJ9 A;  3TTX A;  4QON A;  2ISA A;  5GKN A;  2CAG A;  1SY7 A;  1H7K A;  4ENV A;  4B7A A;  3P9Q A;  3P9P A;  4CAB A;  2J2M A;  4E37 A;  1P7Z A;  1P80 A;  4AUL A;  7CAT A;  1SI8 A;  4ENR A;  3RGS A;  3TTW A;  2A9E A;  1TH3 A;  3E4Y A;  3PQ2 A;  4AUM A;  4ENW A;  2IQF A;  4BFL A;  1IPH A;  1NM0 A;  4QOR A;  1GGK A;  2CAH A;  3HB6 A;  1P81 A;  1H6N A;  2IUF A;  1MQF A;  1QF7 A;  3PQ5 A;  1M7S A;  3ZJ4 A;  4QOQ A;  4QOP A;  4BIM A;  3PQ3 A;  4ENQ A;  1GGF A;  3TTV A;  4B40 A; 
#chains in the Genus database with same CATH homology
 3PQ8 A;  1CF9 A;  1GWH A;  1P7Y A;  3TTT A;  1M85 A;  4B2Y A;  4QOL A;  1HBZ A;  4B5K A;  2XF2 A;  4ENS A;  1QWM A;  3VU3 A;  3DY5 A;  1QWL A;  3TTU A;  4ENP A;  1F4J A;  3PQ6 A;  3ZJ5 A;  3PQ7 A;  4ENT A;  5BV2 P;  4AUE A;  2XQ1 A;  1QWS A;  1A4E A;  1GWE A;  1GGE A;  3P9R A;  1GWF A;  4AUN A;  3P9S A;  1E93 A;  1GGJ A;  3EJ6 A;  4QOO A;  4QOM A;  4B31 A;  1GG9 A;  1GGH A;  4ENU A;  1U5U A;  3PQ4 A;  4AJ9 A;  3TTX A;  4QON A;  2ISA A;  2CAG A;  1SY7 A;  1H7K A;  4ENV A;  4B7A A;  3P9Q A;  3P9P A;  4CAB A;  2J2M A;  4E37 A;  1P7Z A;  1P80 A;  4AUL A;  1SI8 A;  4ENR A;  3TTW A;  2A9E A;  3PQ2 A;  4AUM A;  4ENW A;  2IQF A;  4BFL A;  1IPH A;  1NM0 A;  4QOR A;  1GGK A;  2CAH A;  3HB6 A;  1P81 A;  1H6N A;  2IUF A;  1MQF A;  1QF7 A;  3PQ5 A;  1M7S A;  3ZJ4 A;  4QOQ A;  4QOP A;  4BIM A;  3PQ3 A;  4ENQ A;  1GGF A;  3TTV A;  4B40 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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