4CABA

The refined structure of catalase dr1998 from deinococcus radiodurans at 2.6 a resolution
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
507
structure length
507
Chain Sequence
GTTLTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFFIRDALKFPDLIHSQKPSPTTNIQSQERIFDFFAGSPEATHMITLLYSPWGIPASYRFMQGSGVNTYKWVNDQGEGVLVKYHWEPVQGVRNLTQMQADEVQATNFNHATQDLHDAIERGDFPQWDLFVQIMEDGEHPELDFDPLDDTKIWPREQFPWRHVGQMTLNRNPENVFAETEQAAFGTGVLVDGLDFSDDKMLQGRTFSYSDTQRYRVGPNYLQLPINAPKKHVATNQRDGQMAYRVDTFEGQDQRVNYEPSLLSGPKEAPRRAPEHTPRVEGNLVRAAIERPNPFGQAGMQYRNFADWERDELVSNLSGALAGVDKRIQDKMLEYFTAADADYGQRVREGIQAKEAEMKGQKQEAPVYGTEASSLY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords CATALASE
publication title Structure of the Mono-Functional Heme Catalase Dr1998 from Deinococcus Radiodurans
pubmed doi rcsb
total genus 147
structure length 507
sequence length 507
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2013-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4cabA00
3P9PA 1QWSA 2J2MA 4B2YA 1CF9A 1E93A 1M85A 4AUEA 1SI8A 1A4EA 1NM0A 3P9SA 4ENTA 1P81A 4QORA 3DY5A 1M7SA 1GWFA 3PQ2A 4AJ9A 4ENWA 1F4JA 1HBZA 1QWMA 1GWEA 3P9RA 1U5UA 2CAGA 3PQ6A 4ENVA 1P7YA 4AUMA 3TTVA 1H7KA 1GGKA 4B7AA 4BIMA 1GGJA 1QF7A 4ENSA 5BV2P 4QONA 1P7ZA 4BFLA 4ENRA 1IPHA 4B31A 1GG9A 4QOPA 3TTWA 3VU3A 3ZJ4A 4B5KA 4B40A 2A9EA 4AUNA 2IQFA 3PQ5A 3PQ3A 2CAHA 3P9QA 3EJ6A 1GGHA 4ENUA 3ZJ5A 1P80A 3PQ8A 2XF2A 3HB6A 2IUFA 4E37A 4AULA 1GWHA 4QOLA 4QOOA 1MQFA 4ENPA 4CABA 1QWLA 3TTXA 1SY7A 3TTUA 1H6NA 2ISAA 2XQ1A 1GGEA 1GGFA 4QOQA 3TTTA 4ENQA 3PQ4A 4QOMA 3PQ7A
chains in the Genus database with same CATH superfamily
4B7FA 1DGHB 3P9PA 1DGGA 1QWSA 1DGFA 3J7BA 2J2MA 4B2YA 1CF9A 1E93A 1M85A 4AUEA 1SI8A 1A4EA 1NM0A 3E4WA 3P9SA 4ENTA 1P81A 4QORA 3DY5A 1M7SA 1TH3A 1GWFA 8CATA 3PQ2A 3RE8A 4AJ9A 4ENWA 1F4JA 1HBZA 1QWMA 1GWEA 3P9RA 1U5UA 2CAGA 3PQ6A 4ENVA 1P7YA 4AUMA 1H7KA 1GGKA 3TTVA 4B7AA 1TGUA 4BIMA 1DGBA 3RGPA 1GGJA 3NWLA 1QF7A 3E4YA 4ENSA 5BV2P 4QONA 1P7ZA 1TH4A 4BFLA 3RGSA 4B7GA 4ENRA 1IPHA 4B31A 1GG9A 4QOPA 3TTWA 4BLCA 3VU3A 3ZJ4A 4B5KA 4B40A 2A9EA 4AUNA 2IQFA 3PQ5A 3PQ3A 2CAHA 3P9QA 3EJ6A 1GGHA 4ENUA 3ZJ5A 1P80A 3PQ8A 2XF2A 3HB6A 2IUFA 4E37A 4AULA 1GWHA 4QOLA 4QOOA 1MQFA 1QQWA 4ENPA 4CABA 1QWLA 3TTXA 5GKNA 1SY7A 7CATA 3TTUA 1H6NA 1TH2A 2ISAA 4B7HA 2XQ1A 1GGEA 1GGFA 4QOQA 3TTTA 4ENQA 3PQ4A 1DGHA 4QOMA 3PQ7A
chains in the Genus database with same CATH topology
3P9PA 1QWSA 2J2MA 4B2YA 1CF9A 1E93A 1M85A 4AUEA 1SI8A 1A4EA 1NM0A 3P9SA 4ENTA 1P81A 4QORA 3DY5A 1M7SA 1GWFA 3PQ2A 4AJ9A 4ENWA 1F4JA 1HBZA 1QWMA 1GWEA 3P9RA 1U5UA 2CAGA 3PQ6A 4ENVA 1P7YA 4AUMA 3TTVA 1H7KA 1GGKA 4B7AA 4BIMA 1GGJA 1QF7A 4ENSA 5BV2P 4QONA 1P7ZA 4BFLA 4ENRA 1IPHA 4B31A 1GG9A 4QOPA 3TTWA 3VU3A 3ZJ4A 4B5KA 4B40A 2A9EA 4AUNA 2IQFA 3PQ5A 3PQ3A 2CAHA 3P9QA 3EJ6A 1GGHA 4ENUA 3ZJ5A 1P80A 3PQ8A 2XF2A 3HB6A 2IUFA 4E37A 4AULA 1GWHA 4QOLA 4QOOA 1MQFA 4ENPA 4CABA 1QWLA 3TTXA 1SY7A 3TTUA 1H6NA 2ISAA 2XQ1A 1GGEA 1GGFA 4QOQA 3TTTA 4ENQA 3PQ4A 4QOMA 3PQ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P9P A;  1QWS A;  2J2M A;  4B2Y A;  1CF9 A;  1E93 A;  1M85 A;  4AUE A;  1SI8 A;  1A4E A;  1NM0 A;  3P9S A;  4ENT A;  1P81 A;  4QOR A;  3DY5 A;  1M7S A;  1GWF A;  3PQ2 A;  4AJ9 A;  4ENW A;  1F4J A;  1HBZ A;  1QWM A;  1GWE A;  3P9R A;  1U5U A;  2CAG A;  3PQ6 A;  4ENV A;  1P7Y A;  4AUM A;  3TTV A;  1H7K A;  1GGK A;  4B7A A;  4BIM A;  1GGJ A;  1QF7 A;  4ENS A;  5BV2 P;  4QON A;  1P7Z A;  4BFL A;  4ENR A;  1IPH A;  4B31 A;  1GG9 A;  4QOP A;  3TTW A;  3VU3 A;  3ZJ4 A;  4B5K A;  4B40 A;  2A9E A;  4AUN A;  2IQF A;  3PQ5 A;  3PQ3 A;  2CAH A;  3P9Q A;  3EJ6 A;  1GGH A;  4ENU A;  3ZJ5 A;  1P80 A;  3PQ8 A;  2XF2 A;  3HB6 A;  2IUF A;  4E37 A;  4AUL A;  1GWH A;  4QOL A;  4QOO A;  1MQF A;  4ENP A;  4CAB A;  1QWL A;  3TTX A;  1SY7 A;  3TTU A;  1H6N A;  2ISA A;  2XQ1 A;  1GGE A;  1GGF A;  4QOQ A;  3TTT A;  4ENQ A;  3PQ4 A;  4QOM A;  3PQ7 A; 
#chains in the Genus database with same CATH topology
 4B7F A;  1DGH B;  3P9P A;  1DGG A;  1QWS A;  1DGF A;  3J7B A;  2J2M A;  4B2Y A;  1CF9 A;  1E93 A;  1M85 A;  4AUE A;  1SI8 A;  1A4E A;  1NM0 A;  3E4W A;  3P9S A;  4ENT A;  1P81 A;  4QOR A;  3DY5 A;  1M7S A;  1TH3 A;  1GWF A;  8CAT A;  3PQ2 A;  3RE8 A;  4AJ9 A;  4ENW A;  1F4J A;  1HBZ A;  1QWM A;  1GWE A;  3P9R A;  1U5U A;  2CAG A;  3PQ6 A;  4ENV A;  1P7Y A;  4AUM A;  1H7K A;  1GGK A;  3TTV A;  4B7A A;  1TGU A;  4BIM A;  1DGB A;  3RGP A;  1GGJ A;  3NWL A;  1QF7 A;  3E4Y A;  4ENS A;  5BV2 P;  4QON A;  1P7Z A;  1TH4 A;  4BFL A;  3RGS A;  4B7G A;  4ENR A;  1IPH A;  4B31 A;  1GG9 A;  4QOP A;  3TTW A;  4BLC A;  3VU3 A;  3ZJ4 A;  4B5K A;  4B40 A;  2A9E A;  4AUN A;  2IQF A;  3PQ5 A;  3PQ3 A;  2CAH A;  3P9Q A;  3EJ6 A;  1GGH A;  4ENU A;  3ZJ5 A;  1P80 A;  3PQ8 A;  2XF2 A;  3HB6 A;  2IUF A;  4E37 A;  4AUL A;  1GWH A;  4QOL A;  4QOO A;  1MQF A;  1QQW A;  4ENP A;  4CAB A;  1QWL A;  3TTX A;  5GKN A;  1SY7 A;  7CAT A;  3TTU A;  1H6N A;  1TH2 A;  2ISA A;  4B7H A;  2XQ1 A;  1GGE A;  1GGF A;  4QOQ A;  3TTT A;  4ENQ A;  3PQ4 A;  1DGH A;  4QOM A;  3PQ7 A; 
#chains in the Genus database with same CATH homology
 3P9P A;  1QWS A;  2J2M A;  4B2Y A;  1CF9 A;  1E93 A;  1M85 A;  4AUE A;  1SI8 A;  1A4E A;  1NM0 A;  3P9S A;  4ENT A;  1P81 A;  4QOR A;  3DY5 A;  1M7S A;  1GWF A;  3PQ2 A;  4AJ9 A;  4ENW A;  1F4J A;  1HBZ A;  1QWM A;  1GWE A;  3P9R A;  1U5U A;  2CAG A;  3PQ6 A;  4ENV A;  1P7Y A;  4AUM A;  3TTV A;  1H7K A;  1GGK A;  4B7A A;  4BIM A;  1GGJ A;  1QF7 A;  4ENS A;  5BV2 P;  4QON A;  1P7Z A;  4BFL A;  4ENR A;  1IPH A;  4B31 A;  1GG9 A;  4QOP A;  3TTW A;  3VU3 A;  3ZJ4 A;  4B5K A;  4B40 A;  2A9E A;  4AUN A;  2IQF A;  3PQ5 A;  3PQ3 A;  2CAH A;  3P9Q A;  3EJ6 A;  1GGH A;  4ENU A;  3ZJ5 A;  1P80 A;  3PQ8 A;  2XF2 A;  3HB6 A;  2IUF A;  4E37 A;  4AUL A;  1GWH A;  4QOL A;  4QOO A;  1MQF A;  4ENP A;  4CAB A;  1QWL A;  3TTX A;  1SY7 A;  3TTU A;  1H6N A;  2ISA A;  2XQ1 A;  1GGE A;  1GGF A;  4QOQ A;  3TTT A;  4ENQ A;  3PQ4 A;  4QOM A;  3PQ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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