4CABA

The refined structure of catalase dr1998 from deinococcus radiodurans at 2.6 a resolution
Total Genus 147
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
507
structure length
507
Chain Sequence
GTTLTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFFIRDALKFPDLIHSQKPSPTTNIQSQERIFDFFAGSPEATHMITLLYSPWGIPASYRFMQGSGVNTYKWVNDQGEGVLVKYHWEPVQGVRNLTQMQADEVQATNFNHATQDLHDAIERGDFPQWDLFVQIMEDGEHPELDFDPLDDTKIWPREQFPWRHVGQMTLNRNPENVFAETEQAAFGTGVLVDGLDFSDDKMLQGRTFSYSDTQRYRVGPNYLQLPINAPKKHVATNQRDGQMAYRVDTFEGQDQRVNYEPSLLSGPKEAPRRAPEHTPRVEGNLVRAAIERPNPFGQAGMQYRNFADWERDELVSNLSGALAGVDKRIQDKMLEYFTAADADYGQRVREGIQAKEAEMKGQKQEAPVYGTEASSLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords CATALASE
publication title Structure of the Mono-Functional Heme Catalase Dr1998 from Deinococcus Radiodurans
pubmed doi rcsb
total genus 147
structure length 507
sequence length 507
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2013-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4cabA00
1H7KA 3PQ6A 4ENQA 3TTVA 1U5UA 1E93A 4QOQA 2XQ1A 4ENRA 3PQ8A 3PQ7A 4QOOA 4AUMA 4B2YA 2J2MA 3ZJ5A 1GGKA 2CAHA 2CAGA 3EJ6A 1MQFA 1F4JA 2XF2A 1CF9A 4E37A 4B7AA 1GWFA 4AUEA 2A9EA 4BIMA 4QOMA 1GGEA 4ENWA 4ENPA 2ISAA 1GGJA 3P9QA 5BV2P 1H6NA 4ENVA 1M7SA 3PQ5A 1M85A 3HB6A 3TTXA 3P9PA 2IUFA 1P80A 1QWSA 4QOPA 3ZJ4A 4AULA 4ENUA 1GGHA 3DY5A 1SY7A 3PQ4A 1NM0A 1GG9A 1QF7A 4B40A 4CABA 4BFLA 1GWHA 1QWLA 1P7YA 4AJ9A 1A4EA 1IPHA 3PQ2A 4ENSA 1GGFA 4ENTA 1P81A 3P9RA 4QOLA 3VU3A 1SI8A 1QWMA 4QONA 3PQ3A 4B5KA 3P9SA 1P7ZA 4QORA 1HBZA 4B31A 3TTWA 3TTUA 4AUNA 3TTTA 1GWEA 2IQFA
chains in the Genus database with same CATH superfamily
1H7KA 3PQ6A 4ENQA 3TTVA 1U5UA 1E93A 4QOQA 2XQ1A 4ENRA 1TH4A 3PQ8A 3PQ7A 4QOOA 4AUMA 4B2YA 5GKNA 2J2MA 3ZJ5A 1GGKA 2CAHA 2CAGA 3EJ6A 1MQFA 1F4JA 2XF2A 1CF9A 4E37A 3E4YA 4B7HA 1DGFA 4B7AA 1GWFA 4AUEA 3NWLA 1TGUA 2A9EA 4BIMA 4BLCA 4QOMA 1GGEA 4ENWA 4ENPA 2ISAA 1GGJA 3P9QA 5BV2P 1H6NA 4ENVA 3RE8A 1M7SA 3PQ5A 1M85A 1TH3A 3HB6A 3TTXA 8CATA 1QQWA 3P9PA 2IUFA 1P80A 1QWSA 4QOPA 3ZJ4A 3J7BA 4B7FA 4AULA 4ENUA 1GGHA 3DY5A 1SY7A 3PQ4A 1NM0A 1GG9A 1QF7A 7CATA 4B40A 4CABA 4BFLA 1GWHA 1QWLA 1P7YA 3RGSA 4AJ9A 1A4EA 1IPHA 3PQ2A 4ENSA 1GGFA 3RGPA 4ENTA 1TH2A 1P81A 3P9RA 4QOLA 1DGGA 3VU3A 1SI8A 1QWMA 1DGBA 4QONA 3PQ3A 4B5KA 1DGHA 3P9SA 1P7ZA 4QORA 1HBZA 4B31A 3E4WA 3TTWA 3TTUA 4AUNA 3TTTA 1DGHB 1GWEA 2IQFA 4B7GA
chains in the Genus database with same CATH topology
1H7KA 3PQ6A 4ENQA 3TTVA 1U5UA 1E93A 4QOQA 2XQ1A 4ENRA 3PQ8A 3PQ7A 4QOOA 4AUMA 4B2YA 2J2MA 3ZJ5A 1GGKA 2CAHA 2CAGA 3EJ6A 1MQFA 1F4JA 2XF2A 1CF9A 4E37A 4B7AA 1GWFA 4AUEA 2A9EA 4BIMA 4QOMA 1GGEA 4ENWA 4ENPA 2ISAA 1GGJA 3P9QA 5BV2P 1H6NA 4ENVA 1M7SA 3PQ5A 1M85A 3HB6A 3TTXA 3P9PA 2IUFA 1P80A 1QWSA 4QOPA 3ZJ4A 4AULA 4ENUA 1GGHA 3DY5A 1SY7A 3PQ4A 1NM0A 1GG9A 1QF7A 4B40A 4CABA 4BFLA 1GWHA 1QWLA 1P7YA 4AJ9A 1A4EA 1IPHA 3PQ2A 4ENSA 1GGFA 4ENTA 1P81A 3P9RA 4QOLA 3VU3A 1SI8A 1QWMA 4QONA 3PQ3A 4B5KA 3P9SA 1P7ZA 4QORA 1HBZA 4B31A 3TTWA 3TTUA 4AUNA 3TTTA 1GWEA 2IQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H7K A;  3PQ6 A;  4ENQ A;  3TTV A;  1U5U A;  1E93 A;  4QOQ A;  2XQ1 A;  4ENR A;  3PQ8 A;  3PQ7 A;  4QOO A;  4AUM A;  4B2Y A;  2J2M A;  3ZJ5 A;  1GGK A;  2CAH A;  2CAG A;  3EJ6 A;  1MQF A;  1F4J A;  2XF2 A;  1CF9 A;  4E37 A;  4B7A A;  1GWF A;  4AUE A;  2A9E A;  4BIM A;  4QOM A;  1GGE A;  4ENW A;  4ENP A;  2ISA A;  1GGJ A;  3P9Q A;  5BV2 P;  1H6N A;  4ENV A;  1M7S A;  3PQ5 A;  1M85 A;  3HB6 A;  3TTX A;  3P9P A;  2IUF A;  1P80 A;  1QWS A;  4QOP A;  3ZJ4 A;  4AUL A;  4ENU A;  1GGH A;  3DY5 A;  1SY7 A;  3PQ4 A;  1NM0 A;  1GG9 A;  1QF7 A;  4B40 A;  4CAB A;  4BFL A;  1GWH A;  1QWL A;  1P7Y A;  4AJ9 A;  1A4E A;  1IPH A;  3PQ2 A;  4ENS A;  1GGF A;  4ENT A;  1P81 A;  3P9R A;  4QOL A;  3VU3 A;  1SI8 A;  1QWM A;  4QON A;  3PQ3 A;  4B5K A;  3P9S A;  1P7Z A;  4QOR A;  1HBZ A;  4B31 A;  3TTW A;  3TTU A;  4AUN A;  3TTT A;  1GWE A;  2IQF A; 
#chains in the Genus database with same CATH topology
 1H7K A;  3PQ6 A;  4ENQ A;  3TTV A;  1U5U A;  1E93 A;  4QOQ A;  2XQ1 A;  4ENR A;  1TH4 A;  3PQ8 A;  3PQ7 A;  4QOO A;  4AUM A;  4B2Y A;  5GKN A;  2J2M A;  3ZJ5 A;  1GGK A;  2CAH A;  2CAG A;  3EJ6 A;  1MQF A;  1F4J A;  2XF2 A;  1CF9 A;  4E37 A;  3E4Y A;  4B7H A;  1DGF A;  4B7A A;  1GWF A;  4AUE A;  3NWL A;  1TGU A;  2A9E A;  4BIM A;  4BLC A;  4QOM A;  1GGE A;  4ENW A;  4ENP A;  2ISA A;  1GGJ A;  3P9Q A;  5BV2 P;  1H6N A;  4ENV A;  3RE8 A;  1M7S A;  3PQ5 A;  1M85 A;  1TH3 A;  3HB6 A;  3TTX A;  8CAT A;  1QQW A;  3P9P A;  2IUF A;  1P80 A;  1QWS A;  4QOP A;  3ZJ4 A;  3J7B A;  4B7F A;  4AUL A;  4ENU A;  1GGH A;  3DY5 A;  1SY7 A;  3PQ4 A;  1NM0 A;  1GG9 A;  1QF7 A;  7CAT A;  4B40 A;  4CAB A;  4BFL A;  1GWH A;  1QWL A;  1P7Y A;  3RGS A;  4AJ9 A;  1A4E A;  1IPH A;  3PQ2 A;  4ENS A;  1GGF A;  3RGP A;  4ENT A;  1TH2 A;  1P81 A;  3P9R A;  4QOL A;  1DGG A;  3VU3 A;  1SI8 A;  1QWM A;  1DGB A;  4QON A;  3PQ3 A;  4B5K A;  1DGH A;  3P9S A;  1P7Z A;  4QOR A;  1HBZ A;  4B31 A;  3E4W A;  3TTW A;  3TTU A;  4AUN A;  3TTT A;  1DGH B;  1GWE A;  2IQF A;  4B7G A; 
#chains in the Genus database with same CATH homology
 1H7K A;  3PQ6 A;  4ENQ A;  3TTV A;  1U5U A;  1E93 A;  4QOQ A;  2XQ1 A;  4ENR A;  3PQ8 A;  3PQ7 A;  4QOO A;  4AUM A;  4B2Y A;  2J2M A;  3ZJ5 A;  1GGK A;  2CAH A;  2CAG A;  3EJ6 A;  1MQF A;  1F4J A;  2XF2 A;  1CF9 A;  4E37 A;  4B7A A;  1GWF A;  4AUE A;  2A9E A;  4BIM A;  4QOM A;  1GGE A;  4ENW A;  4ENP A;  2ISA A;  1GGJ A;  3P9Q A;  5BV2 P;  1H6N A;  4ENV A;  1M7S A;  3PQ5 A;  1M85 A;  3HB6 A;  3TTX A;  3P9P A;  2IUF A;  1P80 A;  1QWS A;  4QOP A;  3ZJ4 A;  4AUL A;  4ENU A;  1GGH A;  3DY5 A;  1SY7 A;  3PQ4 A;  1NM0 A;  1GG9 A;  1QF7 A;  4B40 A;  4CAB A;  4BFL A;  1GWH A;  1QWL A;  1P7Y A;  4AJ9 A;  1A4E A;  1IPH A;  3PQ2 A;  4ENS A;  1GGF A;  4ENT A;  1P81 A;  3P9R A;  4QOL A;  3VU3 A;  1SI8 A;  1QWM A;  4QON A;  3PQ3 A;  4B5K A;  3P9S A;  1P7Z A;  4QOR A;  1HBZ A;  4B31 A;  3TTW A;  3TTU A;  4AUN A;  3TTT A;  1GWE A;  2IQF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...