4CBUG

Crystal structure of plasmodium falciparum actin i
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESSTFSGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Motor protein
molecule keywords ACTIN-1
publication title Structural Differences Explain Diverse Functions of Plasmodium Actins.
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 44
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2013-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 4cbuG00
4PKIG 2VIKA 3CJCG 5KYYA 2XF1A 1M4JA 2VACA 2LXXA 1T3XA 2FH2A 1H1VG 1TVJA 3EGDB 3FG7A 3Q2BA 5L6WC 5FAFA 1CNUA 1ESVS 2FH4A 2QTVA 3EH2A 2XFAA 1P8ZG 2FF6G 1M2OA 1KCQA 3A5NS 3EGDA 1YAGG 4BEX1 3A5LS 1WNJA 5KYYB 1X67A 1F7SA 3FG6A 1AK7A 2LLFA 3CJBG 5HVKD 2FH3A 3EG9A 3CIPG 4CBWG 5KYUA 1NMDG 1WFSA 4LIZA 1TMWA 2MV2A 1YVNG 2D8BA 2HD7A 1C0GS 1C0FS 1WM4A 1T44G 1PD1A 5HVKB 3TU5B 5KYXA 2MP4A 1NPHA 3EG9B 5KYNA 5KYUB 5KYWA 5FAEA 3EH1A 1DEJS 1CFYA 4KEFA 2NUTB 1COFA 2FH1A 1M2VB 3EFOA 1SVQA 4S10C 1PCXA 2I2QA 1SVRA 3DAWB 4KEDA 2NUTA 5DD2A 1NM1G 1M2VA 1QPVA 3A5OS 3FFNA 4CBUG 5KYXB 1P8XA 4KEEA 2MOTA 5A1MA 1Q8GA 5KYWB 2NUPA 5IVUA 1V6FA 1VFQA 1VKKA 4JD2H 3EFOB 4CBXG 1NLVG 3EGXA 4PKGG 3L50A 2FGHA 3FFKA 2W0IA 1Q8XA 1EQYS 1PD0A 4Z94G 3CI5G 1HQZ1 1JHWA 1AK6A 3A5MS 1AHQA 2LJ8A 1D0NA 1T3YA 2NUPB 1SVYA 2FF3A 1RGIG 1UDMA 1D4XG 1MDUA 2VILA 1J72A 2KVKA 3EGXB 4PKHB 2L72A 1T2LA
chains in the Genus database with same CATH superfamily
4PKIG 2VIKA 3CJCG 5KYYA 2XF1A 1M4JA 2VACA 2LXXA 1T3XA 2FH2A 1H1VG 1TVJA 3EGDB 3FG7A 3Q2BA 5L6WC 5FAFA 1CNUA 1ESVS 2FH4A 2QTVA 3EH2A 2XFAA 1P8ZG 2FF6G 1M2OA 1KCQA 3A5NS 3EGDA 1YAGG 4BEX1 3DA7A 3A5LS 1WNJA 5KYYB 1X67A 1F7SA 3FG6A 1AK7A 2LLFA 3CJBG 5HVKD 2FH3A 3EG9A 3CIPG 4CBWG 5KYUA 1NMDG 1WFSA 4LIZA 1TMWA 2MV2A 1YVNG 2D8BA 2HD7A 1C0GS 1C0FS 1WM4A 1T44G 1PD1A 5HVKB 3TU5B 5KYXA 2MP4A 1NPHA 3EG9B 5KYNA 5KYUB 5KYWA 5FAEA 3EH1A 1DEJS 1CFYA 4KEFA 2NUTB 1COFA 2FH1A 1M2VB 3EFOA 1SVQA 4S10C 1PCXA 2I2QA 1SVRA 3DAWB 4KEDA 2NUTA 5DD2A 1NM1G 1M2VA 1QPVA 3A5OS 3FFNA 4CBUG 5KYXB 1P8XA 4KEEA 2MOTA 5A1MA 1Q8GA 5KYWB 2NUPA 5IVUA 1V6FA 1VFQA 1VKKA 4JD2H 3EFOB 4CBXG 1NLVG 3EGXA 4PKGG 3L50A 2FGHA 3FFKA 2W0IA 1Q8XA 1EQYS 1PD0A 4Z94G 3CI5G 1HQZ1 1JHWA 1AK6A 3A5MS 1AHQA 2LJ8A 1D0NA 1T3YA 2NUPB 1SVYA 2FF3A 1RGIG 1UDMA 1D4XG 1MDUA 2VILA 1J72A 2KVKA 3EGXB 4PKHB 2L72A 1T2LA
chains in the Genus database with same CATH topology
4PKIG 2VIKA 3CJCG 5KYYA 2XF1A 1M4JA 2VACA 2LXXA 1T3XA 2FH2A 1H1VG 1TVJA 3EGDB 3FG7A 3Q2BA 5L6WC 5FAFA 1CNUA 1ESVS 2FH4A 2QTVA 3EH2A 2XFAA 1P8ZG 2FF6G 1M2OA 1KCQA 3A5NS 3EGDA 1YAGG 4BEX1 3DA7A 3A5LS 1WNJA 5KYYB 1X67A 1F7SA 3FG6A 1AK7A 2LLFA 3CJBG 5HVKD 2FH3A 3EG9A 3CIPG 4CBWG 5KYUA 1NMDG 1WFSA 4LIZA 1TMWA 2MV2A 1YVNG 2D8BA 2HD7A 1C0GS 1C0FS 1WM4A 1T44G 1PD1A 5HVKB 3TU5B 5KYXA 2MP4A 1NPHA 3EG9B 5KYNA 5KYUB 5KYWA 5FAEA 3EH1A 1DEJS 1CFYA 4KEFA 2NUTB 1COFA 2FH1A 1M2VB 3EFOA 1SVQA 4S10C 1PCXA 2I2QA 1SVRA 3DAWB 4KEDA 2NUTA 5DD2A 1NM1G 1M2VA 1QPVA 3A5OS 3FFNA 4CBUG 5KYXB 1P8XA 4KEEA 2MOTA 5A1MA 1Q8GA 5KYWB 2NUPA 5IVUA 1V6FA 1VFQA 1VKKA 4JD2H 3EFOB 4CBXG 1NLVG 3EGXA 4PKGG 3L50A 2FGHA 3FFKA 2W0IA 1Q8XA 1EQYS 1PD0A 4Z94G 3CI5G 1HQZ1 1JHWA 1AK6A 3A5MS 1AHQA 2LJ8A 1D0NA 1T3YA 2NUPB 1SVYA 2FF3A 1RGIG 1UDMA 1D4XG 1MDUA 2VILA 1J72A 2KVKA 3EGXB 4PKHB 2L72A 1T2LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PKI G;  2VIK A;  3CJC G;  5KYY A;  2XF1 A;  1M4J A;  2VAC A;  2LXX A;  1T3X A;  2FH2 A;  1H1V G;  1TVJ A;  3EGD B;  3FG7 A;  3Q2B A;  5L6W C;  5FAF A;  1CNU A;  1ESV S;  2FH4 A;  2QTV A;  3EH2 A;  2XFA A;  1P8Z G;  2FF6 G;  1M2O A;  1KCQ A;  3A5N S;  3EGD A;  1YAG G;  4BEX 1;  3A5L S;  1WNJ A;  5KYY B;  1X67 A;  1F7S A;  3FG6 A;  1AK7 A;  2LLF A;  3CJB G;  5HVK D;  2FH3 A;  3EG9 A;  3CIP G;  4CBW G;  5KYU A;  1NMD G;  1WFS A;  4LIZ A;  1TMW A;  2MV2 A;  1YVN G;  2D8B A;  2HD7 A;  1C0G S;  1C0F S;  1WM4 A;  1T44 G;  1PD1 A;  5HVK B;  3TU5 B;  5KYX A;  2MP4 A;  1NPH A;  3EG9 B;  5KYN A;  5KYU B;  5KYW A;  5FAE A;  3EH1 A;  1DEJ S;  1CFY A;  4KEF A;  2NUT B;  1COF A;  2FH1 A;  1M2V B;  3EFO A;  1SVQ A;  4S10 C;  1PCX A;  2I2Q A;  1SVR A;  3DAW B;  4KED A;  2NUT A;  5DD2 A;  1NM1 G;  1M2V A;  1QPV A;  3A5O S;  3FFN A;  4CBU G;  5KYX B;  1P8X A;  4KEE A;  2MOT A;  5A1M A;  1Q8G A;  5KYW B;  2NUP A;  5IVU A;  1V6F A;  1VFQ A;  1VKK A;  4JD2 H;  3EFO B;  4CBX G;  1NLV G;  3EGX A;  4PKG G;  3L50 A;  2FGH A;  3FFK A;  2W0I A;  1Q8X A;  1EQY S;  1PD0 A;  4Z94 G;  3CI5 G;  1HQZ 1;  1JHW A;  1AK6 A;  3A5M S;  1AHQ A;  2LJ8 A;  1D0N A;  1T3Y A;  2NUP B;  1SVY A;  2FF3 A;  1RGI G;  1UDM A;  1D4X G;  1MDU A;  2VIL A;  1J72 A;  2KVK A;  3EGX B;  4PKH B;  2L72 A;  1T2L A; 
#chains in the Genus database with same CATH topology
 4PKI G;  2VIK A;  3CJC G;  5KYY A;  2XF1 A;  1M4J A;  2VAC A;  2LXX A;  1T3X A;  2FH2 A;  1H1V G;  1TVJ A;  3EGD B;  3FG7 A;  3Q2B A;  5L6W C;  5FAF A;  1CNU A;  1ESV S;  2FH4 A;  2QTV A;  3EH2 A;  2XFA A;  1P8Z G;  2FF6 G;  1M2O A;  1KCQ A;  3A5N S;  3EGD A;  1YAG G;  4BEX 1;  3DA7 A;  3A5L S;  1WNJ A;  5KYY B;  1X67 A;  1F7S A;  3FG6 A;  1AK7 A;  2LLF A;  3CJB G;  5HVK D;  2FH3 A;  3EG9 A;  3CIP G;  4CBW G;  5KYU A;  1NMD G;  1WFS A;  4LIZ A;  1TMW A;  2MV2 A;  1YVN G;  2D8B A;  2HD7 A;  1C0G S;  1C0F S;  1WM4 A;  1T44 G;  1PD1 A;  5HVK B;  3TU5 B;  5KYX A;  2MP4 A;  1NPH A;  3EG9 B;  5KYN A;  5KYU B;  5KYW A;  5FAE A;  3EH1 A;  1DEJ S;  1CFY A;  4KEF A;  2NUT B;  1COF A;  2FH1 A;  1M2V B;  3EFO A;  1SVQ A;  4S10 C;  1PCX A;  2I2Q A;  1SVR A;  3DAW B;  4KED A;  2NUT A;  5DD2 A;  1NM1 G;  1M2V A;  1QPV A;  3A5O S;  3FFN A;  4CBU G;  5KYX B;  1P8X A;  4KEE A;  2MOT A;  5A1M A;  1Q8G A;  5KYW B;  2NUP A;  5IVU A;  1V6F A;  1VFQ A;  1VKK A;  4JD2 H;  3EFO B;  4CBX G;  1NLV G;  3EGX A;  4PKG G;  3L50 A;  2FGH A;  3FFK A;  2W0I A;  1Q8X A;  1EQY S;  1PD0 A;  4Z94 G;  3CI5 G;  1HQZ 1;  1JHW A;  1AK6 A;  3A5M S;  1AHQ A;  2LJ8 A;  1D0N A;  1T3Y A;  2NUP B;  1SVY A;  2FF3 A;  1RGI G;  1UDM A;  1D4X G;  1MDU A;  2VIL A;  1J72 A;  2KVK A;  3EGX B;  4PKH B;  2L72 A;  1T2L A; 
#chains in the Genus database with same CATH homology
 4PKI G;  2VIK A;  3CJC G;  5KYY A;  2XF1 A;  1M4J A;  2VAC A;  2LXX A;  1T3X A;  2FH2 A;  1H1V G;  1TVJ A;  3EGD B;  3FG7 A;  3Q2B A;  5L6W C;  5FAF A;  1CNU A;  1ESV S;  2FH4 A;  2QTV A;  3EH2 A;  2XFA A;  1P8Z G;  2FF6 G;  1M2O A;  1KCQ A;  3A5N S;  3EGD A;  1YAG G;  4BEX 1;  3DA7 A;  3A5L S;  1WNJ A;  5KYY B;  1X67 A;  1F7S A;  3FG6 A;  1AK7 A;  2LLF A;  3CJB G;  5HVK D;  2FH3 A;  3EG9 A;  3CIP G;  4CBW G;  5KYU A;  1NMD G;  1WFS A;  4LIZ A;  1TMW A;  2MV2 A;  1YVN G;  2D8B A;  2HD7 A;  1C0G S;  1C0F S;  1WM4 A;  1T44 G;  1PD1 A;  5HVK B;  3TU5 B;  5KYX A;  2MP4 A;  1NPH A;  3EG9 B;  5KYN A;  5KYU B;  5KYW A;  5FAE A;  3EH1 A;  1DEJ S;  1CFY A;  4KEF A;  2NUT B;  1COF A;  2FH1 A;  1M2V B;  3EFO A;  1SVQ A;  4S10 C;  1PCX A;  2I2Q A;  1SVR A;  3DAW B;  4KED A;  2NUT A;  5DD2 A;  1NM1 G;  1M2V A;  1QPV A;  3A5O S;  3FFN A;  4CBU G;  5KYX B;  1P8X A;  4KEE A;  2MOT A;  5A1M A;  1Q8G A;  5KYW B;  2NUP A;  5IVU A;  1V6F A;  1VFQ A;  1VKK A;  4JD2 H;  3EFO B;  4CBX G;  1NLV G;  3EGX A;  4PKG G;  3L50 A;  2FGH A;  3FFK A;  2W0I A;  1Q8X A;  1EQY S;  1PD0 A;  4Z94 G;  3CI5 G;  1HQZ 1;  1JHW A;  1AK6 A;  3A5M S;  1AHQ A;  2LJ8 A;  1D0N A;  1T3Y A;  2NUP B;  1SVY A;  2FF3 A;  1RGI G;  1UDM A;  1D4X G;  1MDU A;  2VIL A;  1J72 A;  2KVK A;  3EGX B;  4PKH B;  2L72 A;  1T2L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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