4CBUG

Crystal structure of plasmodium falciparum actin i
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESSTFSGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Motor protein
molecule keywords ACTIN-1
publication title Structural Differences Explain Diverse Functions of Plasmodium Actins.
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 44
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2013-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 4cbuG00
2VILA 2L72A 1P8XA 3EFOA 1TMWA 3FG6A 5HVKB 4BEX1 5KYXA 1COFA 3DAWB 3EGDA 1M4JA 5KYWA 4S10C 4JD2H 1SVRA 4CBWG 1AK6A 1P8ZG 3TU5B 5DD2A 1CNUA 4KEDA 1YVNG 1AHQA 4Z94G 1JHWA 5KYYB 1TVJA 3FG7A 4PKIG 4CBUG 2MV2A 2VACA 2MP4A 5KYNA 2NUTB 5FAFA 1DEJS 1QPVA 1T3YA 2NUPB 1UDMA 1C0FS 2FH1A 1ESVS 5A1MA 1NMDG 3A5MS 4LIZA 4CBXG 2I2QA 1HQZ1 2FGHA 5KYUB 2D8BA 2FH3A 4KEEA 1WNJA 2XFAA 2VIKA 1M2VB 5IVUA 2QTVA 2W0IA 3CIPG 1T3XA 1H1VG 1SVQA 3A5LS 3EG9B 3EGXB 2HD7A 1AK7A 5KYYA 5L6WC 1WM4A 2LXXA 1VKKA 1CFYA 2FF6G 3FFNA 4KEFA 2MOTA 2NUTA 1MDUA 1RGIG 1F7SA 3L50A 2XF1A 1NLVG 1T2LA 2NUPA 1WFSA 1EQYS 1Q8XA 3CJCG 4PKGG 2FH4A 3A5NS 3CJBG 1NPHA 1KCQA 1M2OA 1D4XG 2KVKA 3EFOB 2FF3A 3FFKA 5KYXB 1VFQA 3EGDB 1YAGG 5KYWB 1M2VA 2LJ8A 3EH1A 2FH2A 3EH2A 1PCXA 5HVKD 1PD0A 3EG9A 3EGXA 1NM1G 5FAEA 1V6FA 1SVYA 1PD1A 3CI5G 4PKHB 1D0NA 1Q8GA 2LLFA 1T44G 1C0GS 3Q2BA 1X67A 1J72A 3A5OS 5KYUA
chains in the Genus database with same CATH superfamily
2VILA 2L72A 1P8XA 3EFOA 1TMWA 3FG6A 5HVKB 4BEX1 5KYXA 1COFA 3DAWB 3EGDA 1M4JA 5KYWA 3DA7A 4S10C 4JD2H 1SVRA 4CBWG 1AK6A 1P8ZG 3TU5B 5DD2A 1CNUA 4KEDA 1YVNG 1AHQA 4Z94G 1JHWA 5KYYB 1TVJA 3FG7A 4PKIG 4CBUG 2MV2A 2VACA 2MP4A 5KYNA 2NUTB 5FAFA 1DEJS 1QPVA 1T3YA 2NUPB 1UDMA 1C0FS 2FH1A 1ESVS 5A1MA 1NMDG 3A5MS 4LIZA 4CBXG 2I2QA 1HQZ1 2FGHA 5KYUB 2D8BA 2FH3A 4KEEA 1WNJA 2XFAA 2VIKA 1M2VB 5IVUA 2QTVA 2W0IA 3CIPG 1T3XA 1H1VG 1SVQA 3A5LS 3EG9B 3EGXB 2HD7A 1AK7A 5KYYA 5L6WC 1WM4A 2LXXA 1VKKA 1CFYA 2FF6G 3FFNA 4KEFA 2MOTA 2NUTA 1MDUA 1RGIG 1F7SA 3L50A 2XF1A 1NLVG 1T2LA 2NUPA 1WFSA 1EQYS 1Q8XA 3CJCG 4PKGG 2FH4A 3A5NS 3CJBG 1NPHA 1KCQA 1M2OA 1D4XG 2KVKA 3EFOB 2FF3A 3FFKA 5KYXB 1VFQA 3EGDB 1YAGG 5KYWB 1M2VA 2LJ8A 3EH1A 2FH2A 3EH2A 1PCXA 5HVKD 1PD0A 3EG9A 3EGXA 1NM1G 5FAEA 1V6FA 1SVYA 1PD1A 3CI5G 4PKHB 1D0NA 1Q8GA 2LLFA 1T44G 1C0GS 3Q2BA 1X67A 1J72A 3A5OS 5KYUA
chains in the Genus database with same CATH topology
2VILA 2L72A 1P8XA 3EFOA 1TMWA 3FG6A 5HVKB 4BEX1 5KYXA 1COFA 3DAWB 3EGDA 1M4JA 5KYWA 3DA7A 4S10C 4JD2H 1SVRA 4CBWG 1AK6A 1P8ZG 3TU5B 5DD2A 1CNUA 4KEDA 1YVNG 1AHQA 4Z94G 1JHWA 5KYYB 1TVJA 3FG7A 4PKIG 4CBUG 2MV2A 2VACA 2MP4A 5KYNA 2NUTB 5FAFA 1DEJS 1QPVA 1T3YA 2NUPB 1UDMA 1C0FS 2FH1A 1ESVS 5A1MA 1NMDG 3A5MS 4LIZA 4CBXG 2I2QA 1HQZ1 2FGHA 5KYUB 2D8BA 2FH3A 4KEEA 1WNJA 2XFAA 2VIKA 1M2VB 5IVUA 2QTVA 2W0IA 3CIPG 1T3XA 1H1VG 1SVQA 3A5LS 3EG9B 3EGXB 2HD7A 1AK7A 5KYYA 5L6WC 1WM4A 2LXXA 1VKKA 1CFYA 2FF6G 3FFNA 4KEFA 2MOTA 2NUTA 1MDUA 1RGIG 1F7SA 3L50A 2XF1A 1NLVG 1T2LA 2NUPA 1WFSA 1EQYS 1Q8XA 3CJCG 4PKGG 2FH4A 3A5NS 3CJBG 1NPHA 1KCQA 1M2OA 1D4XG 2KVKA 3EFOB 2FF3A 3FFKA 5KYXB 1VFQA 3EGDB 1YAGG 5KYWB 1M2VA 2LJ8A 3EH1A 2FH2A 3EH2A 1PCXA 5HVKD 1PD0A 3EG9A 3EGXA 1NM1G 5FAEA 1V6FA 1SVYA 1PD1A 3CI5G 4PKHB 1D0NA 1Q8GA 2LLFA 1T44G 1C0GS 3Q2BA 1X67A 1J72A 3A5OS 5KYUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VIL A;  2L72 A;  1P8X A;  3EFO A;  1TMW A;  3FG6 A;  5HVK B;  4BEX 1;  5KYX A;  1COF A;  3DAW B;  3EGD A;  1M4J A;  5KYW A;  4S10 C;  4JD2 H;  1SVR A;  4CBW G;  1AK6 A;  1P8Z G;  3TU5 B;  5DD2 A;  1CNU A;  4KED A;  1YVN G;  1AHQ A;  4Z94 G;  1JHW A;  5KYY B;  1TVJ A;  3FG7 A;  4PKI G;  4CBU G;  2MV2 A;  2VAC A;  2MP4 A;  5KYN A;  2NUT B;  5FAF A;  1DEJ S;  1QPV A;  1T3Y A;  2NUP B;  1UDM A;  1C0F S;  2FH1 A;  1ESV S;  5A1M A;  1NMD G;  3A5M S;  4LIZ A;  4CBX G;  2I2Q A;  1HQZ 1;  2FGH A;  5KYU B;  2D8B A;  2FH3 A;  4KEE A;  1WNJ A;  2XFA A;  2VIK A;  1M2V B;  5IVU A;  2QTV A;  2W0I A;  3CIP G;  1T3X A;  1H1V G;  1SVQ A;  3A5L S;  3EG9 B;  3EGX B;  2HD7 A;  1AK7 A;  5KYY A;  5L6W C;  1WM4 A;  2LXX A;  1VKK A;  1CFY A;  2FF6 G;  3FFN A;  4KEF A;  2MOT A;  2NUT A;  1MDU A;  1RGI G;  1F7S A;  3L50 A;  2XF1 A;  1NLV G;  1T2L A;  2NUP A;  1WFS A;  1EQY S;  1Q8X A;  3CJC G;  4PKG G;  2FH4 A;  3A5N S;  3CJB G;  1NPH A;  1KCQ A;  1M2O A;  1D4X G;  2KVK A;  3EFO B;  2FF3 A;  3FFK A;  5KYX B;  1VFQ A;  3EGD B;  1YAG G;  5KYW B;  1M2V A;  2LJ8 A;  3EH1 A;  2FH2 A;  3EH2 A;  1PCX A;  5HVK D;  1PD0 A;  3EG9 A;  3EGX A;  1NM1 G;  5FAE A;  1V6F A;  1SVY A;  1PD1 A;  3CI5 G;  4PKH B;  1D0N A;  1Q8G A;  2LLF A;  1T44 G;  1C0G S;  3Q2B A;  1X67 A;  1J72 A;  3A5O S;  5KYU A; 
#chains in the Genus database with same CATH topology
 2VIL A;  2L72 A;  1P8X A;  3EFO A;  1TMW A;  3FG6 A;  5HVK B;  4BEX 1;  5KYX A;  1COF A;  3DAW B;  3EGD A;  1M4J A;  5KYW A;  3DA7 A;  4S10 C;  4JD2 H;  1SVR A;  4CBW G;  1AK6 A;  1P8Z G;  3TU5 B;  5DD2 A;  1CNU A;  4KED A;  1YVN G;  1AHQ A;  4Z94 G;  1JHW A;  5KYY B;  1TVJ A;  3FG7 A;  4PKI G;  4CBU G;  2MV2 A;  2VAC A;  2MP4 A;  5KYN A;  2NUT B;  5FAF A;  1DEJ S;  1QPV A;  1T3Y A;  2NUP B;  1UDM A;  1C0F S;  2FH1 A;  1ESV S;  5A1M A;  1NMD G;  3A5M S;  4LIZ A;  4CBX G;  2I2Q A;  1HQZ 1;  2FGH A;  5KYU B;  2D8B A;  2FH3 A;  4KEE A;  1WNJ A;  2XFA A;  2VIK A;  1M2V B;  5IVU A;  2QTV A;  2W0I A;  3CIP G;  1T3X A;  1H1V G;  1SVQ A;  3A5L S;  3EG9 B;  3EGX B;  2HD7 A;  1AK7 A;  5KYY A;  5L6W C;  1WM4 A;  2LXX A;  1VKK A;  1CFY A;  2FF6 G;  3FFN A;  4KEF A;  2MOT A;  2NUT A;  1MDU A;  1RGI G;  1F7S A;  3L50 A;  2XF1 A;  1NLV G;  1T2L A;  2NUP A;  1WFS A;  1EQY S;  1Q8X A;  3CJC G;  4PKG G;  2FH4 A;  3A5N S;  3CJB G;  1NPH A;  1KCQ A;  1M2O A;  1D4X G;  2KVK A;  3EFO B;  2FF3 A;  3FFK A;  5KYX B;  1VFQ A;  3EGD B;  1YAG G;  5KYW B;  1M2V A;  2LJ8 A;  3EH1 A;  2FH2 A;  3EH2 A;  1PCX A;  5HVK D;  1PD0 A;  3EG9 A;  3EGX A;  1NM1 G;  5FAE A;  1V6F A;  1SVY A;  1PD1 A;  3CI5 G;  4PKH B;  1D0N A;  1Q8G A;  2LLF A;  1T44 G;  1C0G S;  3Q2B A;  1X67 A;  1J72 A;  3A5O S;  5KYU A; 
#chains in the Genus database with same CATH homology
 2VIL A;  2L72 A;  1P8X A;  3EFO A;  1TMW A;  3FG6 A;  5HVK B;  4BEX 1;  5KYX A;  1COF A;  3DAW B;  3EGD A;  1M4J A;  5KYW A;  3DA7 A;  4S10 C;  4JD2 H;  1SVR A;  4CBW G;  1AK6 A;  1P8Z G;  3TU5 B;  5DD2 A;  1CNU A;  4KED A;  1YVN G;  1AHQ A;  4Z94 G;  1JHW A;  5KYY B;  1TVJ A;  3FG7 A;  4PKI G;  4CBU G;  2MV2 A;  2VAC A;  2MP4 A;  5KYN A;  2NUT B;  5FAF A;  1DEJ S;  1QPV A;  1T3Y A;  2NUP B;  1UDM A;  1C0F S;  2FH1 A;  1ESV S;  5A1M A;  1NMD G;  3A5M S;  4LIZ A;  4CBX G;  2I2Q A;  1HQZ 1;  2FGH A;  5KYU B;  2D8B A;  2FH3 A;  4KEE A;  1WNJ A;  2XFA A;  2VIK A;  1M2V B;  5IVU A;  2QTV A;  2W0I A;  3CIP G;  1T3X A;  1H1V G;  1SVQ A;  3A5L S;  3EG9 B;  3EGX B;  2HD7 A;  1AK7 A;  5KYY A;  5L6W C;  1WM4 A;  2LXX A;  1VKK A;  1CFY A;  2FF6 G;  3FFN A;  4KEF A;  2MOT A;  2NUT A;  1MDU A;  1RGI G;  1F7S A;  3L50 A;  2XF1 A;  1NLV G;  1T2L A;  2NUP A;  1WFS A;  1EQY S;  1Q8X A;  3CJC G;  4PKG G;  2FH4 A;  3A5N S;  3CJB G;  1NPH A;  1KCQ A;  1M2O A;  1D4X G;  2KVK A;  3EFO B;  2FF3 A;  3FFK A;  5KYX B;  1VFQ A;  3EGD B;  1YAG G;  5KYW B;  1M2V A;  2LJ8 A;  3EH1 A;  2FH2 A;  3EH2 A;  1PCX A;  5HVK D;  1PD0 A;  3EG9 A;  3EGX A;  1NM1 G;  5FAE A;  1V6F A;  1SVY A;  1PD1 A;  3CI5 G;  4PKH B;  1D0N A;  1Q8G A;  2LLF A;  1T44 G;  1C0G S;  3Q2B A;  1X67 A;  1J72 A;  3A5O S;  5KYU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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