4CGKA

Crystal structure of the essential protein pcsb from streptococcus pneumoniae
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
351
structure length
351
Chain Sequence
SNLTAQQQEAQKQVDQIQEQVSAIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTSYINTIVNSKSITEAISRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAAELSLAAEKATAEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQSVLASANTNLTAQVQAVSESAAAPVRAKVRPTYSTNASSYPIGECTWGVKTLAPWAGDYWGNGAQWATSAAAAGFRTGSTPQVGAIACWNDGGYGHVAVVTAVESTTRIQVSESNYAGNRTIGNHRGWFNPTTTSEGFVTYIYAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords SECRETED 45 KDA PROTEIN
publication title Structural Basis of Pcsb-Mediated Cell Separation in Streptococcus Pneumoniae.
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 129
structure length 351
sequence length 351
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4cgkA02
3A30A 2VPMA 3VPIA 4Q4TA 3PBCA 3KW0A 3H41A 4FQBA 4CSHA 3A2ZA 3GT2A 2IO7A 2K3AA 2XIVA 4OLKA 2IOBA 3M1UA 2LRJA 4EOBA 2VPSA 4F0VA 3PBIA 4FDYA 3I86A 2IOAA 4CGKA 4R0KA 4FQAA 4EQAA 2HBWA 2K1GA 3NPFA 4Q4GX 3S0QA 4FGIA 4HZBA 3VPJA 3O98A 4F0WA 4LJ1A 3NE0A 4HPEA 2IO8A 4FGEA 3A2YA 4FGDA 4Q4NA 4F4MA 3PVQA 2EVRA 4HZ9A 2IO9A 2FG0A 2IF6A 4CT3A 2VOBA 4EQ8A 4JXBA
chains in the Genus database with same CATH superfamily
4JURA 4HFFA 3A30A 2VPMA 3VPIA 4Q4TA 3PBCA 3KW0A 3H41A 4FQBA 4CSHA 3A2ZA 3GT2A 2IO7A 2K3AA 2XIVA 4OLKA 4HFKA 2IOBA 3M1UA 2LRJA 4HFLA 4EOBA 2VPSA 4F0VA 3PBIA 4FDYA 3I86A 2IOAA 4CGKA 2WP7A 4J30A 4FQAA 4R0KA 4EQAA 2HBWA 2K1GA 3NPFA 4Q4GX 3S0QA 4FGIA 4HZBA 3VPJA 3O98A 4F0WA 4LJ1A 3NE0A 4HPEA 2IO8A 4FGEA 4J32A 3A2YA 3EBQA 4FGDA 4Q4NA 4F4MA 3PVQA 2EVRA 4HZ9A 2IO9A 2FG0A 2IF6A 4CT3A 2VOBA 4EQ8A 4JXBA
chains in the Genus database with same CATH topology
3A30A 2VPMA 3VPIA 4Q4TA 3PBCA 3KW0A 3H41A 4FQBA 4CSHA 3A2ZA 3GT2A 2IO7A 2K3AA 2XIVA 4OLKA 2IOBA 3M1UA 2LRJA 4EOBA 2VPSA 4F0VA 3PBIA 4FDYA 3I86A 2IOAA 4CGKA 4R0KA 4FQAA 4EQAA 2HBWA 2K1GA 3NPFA 4Q4GX 3S0QA 4FGIA 4HZBA 3VPJA 3O98A 4F0WA 4LJ1A 3NE0A 4HPEA 2IO8A 4FGEA 3A2YA 4FGDA 4Q4NA 4F4MA 3PVQA 2EVRA 4HZ9A 2IO9A 2FG0A 2IF6A 4CT3A 2VOBA 4EQ8A 4JXBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A30 A;  2VPM A;  3VPI A;  4Q4T A;  3PBC A;  3KW0 A;  3H41 A;  4FQB A;  4CSH A;  3A2Z A;  3GT2 A;  2IO7 A;  2K3A A;  2XIV A;  4OLK A;  2IOB A;  3M1U A;  2LRJ A;  4EOB A;  2VPS A;  4F0V A;  3PBI A;  4FDY A;  3I86 A;  2IOA A;  4CGK A;  4R0K A;  4FQA A;  4EQA A;  2HBW A;  2K1G A;  3NPF A;  4Q4G X;  3S0Q A;  4FGI A;  4HZB A;  3VPJ A;  3O98 A;  4F0W A;  4LJ1 A;  3NE0 A;  4HPE A;  2IO8 A;  4FGE A;  3A2Y A;  4FGD A;  4Q4N A;  4F4M A;  3PVQ A;  2EVR A;  4HZ9 A;  2IO9 A;  2FG0 A;  2IF6 A;  4CT3 A;  2VOB A;  4EQ8 A;  4JXB A; 
#chains in the Genus database with same CATH topology
 4JUR A;  4HFF A;  3A30 A;  2VPM A;  3VPI A;  4Q4T A;  3PBC A;  3KW0 A;  3H41 A;  4FQB A;  4CSH A;  3A2Z A;  3GT2 A;  2IO7 A;  2K3A A;  2XIV A;  4OLK A;  4HFK A;  2IOB A;  3M1U A;  2LRJ A;  4HFL A;  4EOB A;  2VPS A;  4F0V A;  3PBI A;  4FDY A;  3I86 A;  2IOA A;  4CGK A;  2WP7 A;  4J30 A;  4FQA A;  4R0K A;  4EQA A;  2HBW A;  2K1G A;  3NPF A;  4Q4G X;  3S0Q A;  4FGI A;  4HZB A;  3VPJ A;  3O98 A;  4F0W A;  4LJ1 A;  3NE0 A;  4HPE A;  2IO8 A;  4FGE A;  4J32 A;  3A2Y A;  3EBQ A;  4FGD A;  4Q4N A;  4F4M A;  3PVQ A;  2EVR A;  4HZ9 A;  2IO9 A;  2FG0 A;  2IF6 A;  4CT3 A;  2VOB A;  4EQ8 A;  4JXB A; 
#chains in the Genus database with same CATH homology
 3A30 A;  2VPM A;  3VPI A;  4Q4T A;  3PBC A;  3KW0 A;  3H41 A;  4FQB A;  4CSH A;  3A2Z A;  3GT2 A;  2IO7 A;  2K3A A;  2XIV A;  4OLK A;  2IOB A;  3M1U A;  2LRJ A;  4EOB A;  2VPS A;  4F0V A;  3PBI A;  4FDY A;  3I86 A;  2IOA A;  4CGK A;  4R0K A;  4FQA A;  4EQA A;  2HBW A;  2K1G A;  3NPF A;  4Q4G X;  3S0Q A;  4FGI A;  4HZB A;  3VPJ A;  3O98 A;  4F0W A;  4LJ1 A;  3NE0 A;  4HPE A;  2IO8 A;  4FGE A;  3A2Y A;  4FGD A;  4Q4N A;  4F4M A;  3PVQ A;  2EVR A;  4HZ9 A;  2IO9 A;  2FG0 A;  2IF6 A;  4CT3 A;  2VOB A;  4EQ8 A;  4JXB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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