4CGXA

Crystal structure of the n-terminal domain of the pa subunit of thogoto virus polymerase (form 1)
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
163
structure length
161
Chain Sequence
DRPDHIDSRVWELSETQEDWITQVHGHVRRVVECWKYTICCLISNMHTGAPQYDVFKWQDRSTIEWICSKKKVQYPERDTPDLYDNERAVAYKVLLVSDLSDHSPTSGIYHDLAFNLEGEAEESCALVLRGSQLQDIKGFLCRALEWVVSNNLTQEVVETI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords POLYMERASE ACIDIC PROTEIN
publication title Comparative Structural and Functional Analysis of Orthomyxovirus Polymerase CAP-Snatching Domains.
pubmed doi rcsb
source organism Thogoto virus
total genus 50
structure length 161
sequence length 163
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-11-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 4cgxA00
4E5IA 5DBSA 4AWKA 4CHCA 4CGXA 5D42A 5FDDA 5JHTA 4ZQQA 5CZNA 4YYLA 4ZI0A 4E5LA 3EBJA 3HW5A 3HW3A 4AWFA 5DEBA 3HW4A 4AVLA 4E5GA 4AVQA 5CL0A 5D2OA 5D9JA 4NFZA 4E5JA 5FDGA 4ZHZA 5CCYA 4AWMA 5I13A 4E5EA 4CGSA 4E5FA 4AVGA 5CGVA 5DESA 5EGAA 4E5HA 4AWHA 4AWGA 5D4GA 5JHVA 5D8UA 3HW6A
chains in the Genus database with same CATH superfamily
2XI5A 5D42A 1ES8A 2P0JA 4ZQQA 4ZI0A 1DFMA 1M0DA 4E5LA 3MQ6A 4AWFA 2FQZA 4AVLA 4E5GA 4F0PA 4AVQA 3WVKA 1BAMA 3DVOA 4F0QA 4E5JA 3V21A 3BAMA 5CCYA 2EWFA 3MQYA 4E5EA 4E5FA 1SDOA 4E5HA 5JHVA 3WVPA 4AWKA 3DW9A 1BHMA 3EBJA 2PFJA 3HW4A 3DPGA 5D2OA 3N78A 4R28A 5FDGA 4OC8A 3WVIA 4AWMA 3BM3A 4AVGA 3N7BA 2FOKA 5EGAA 4AWGA 5D4GA 1CFRA 3HW6A 3ODHA 2XI7A 4YYLA 2BAMA 3HW3A 1FZRA 1D2IA 4NFZA 1KNVA 1DC1A 5I13A 3WVGA 5CGVA 5DESA 4AWHA 5D8UA 4E5IA 5DBSA 4CHCA 4CGXA 1M0IA 1FOKA 5FDDA 5JHTA 5CZNA 2P14A 2E52A 3HW5A 5DEBA 5CL0A 3A4KA 3WVHA 3CAEA 5D9JA 3V20A 1VRRA 4ZHZA 4CGSA 3V1ZA 2GB7A 1ESGA
chains in the Genus database with same CATH topology
2XI5A 5D42A 1ES8A 2P0JA 4ZQQA 4ZI0A 1DFMA 1M0DA 4E5LA 3MQ6A 4AWFA 2FQZA 4AVLA 4E5GA 4F0PA 4AVQA 3WVKA 1BAMA 3DVOA 4F0QA 4E5JA 3V21A 3BAMA 5CCYA 2EWFA 3MQYA 4E5EA 4E5FA 1SDOA 4E5HA 5JHVA 3WVPA 4AWKA 3DW9A 1BHMA 3EBJA 2PFJA 3HW4A 3DPGA 5D2OA 3N78A 4R28A 5FDGA 4OC8A 3WVIA 4AWMA 3BM3A 4AVGA 3N7BA 2FOKA 5EGAA 4AWGA 5D4GA 1CFRA 3HW6A 3ODHA 2XI7A 4YYLA 2BAMA 3HW3A 1FZRA 1D2IA 4NFZA 1KNVA 1DC1A 5I13A 3WVGA 5CGVA 5DESA 4AWHA 5D8UA 4E5IA 5DBSA 4CHCA 4CGXA 1M0IA 1FOKA 5FDDA 5JHTA 5CZNA 2P14A 2E52A 3HW5A 5DEBA 5CL0A 3A4KA 3WVHA 3CAEA 5D9JA 3V20A 1VRRA 4ZHZA 4CGSA 3V1ZA 2GB7A 1ESGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E5I A;  5DBS A;  4AWK A;  4CHC A;  4CGX A;  5D42 A;  5FDD A;  5JHT A;  4ZQQ A;  5CZN A;  4YYL A;  4ZI0 A;  4E5L A;  3EBJ A;  3HW5 A;  3HW3 A;  4AWF A;  5DEB A;  3HW4 A;  4AVL A;  4E5G A;  4AVQ A;  5CL0 A;  5D2O A;  5D9J A;  4NFZ A;  4E5J A;  5FDG A;  4ZHZ A;  5CCY A;  4AWM A;  5I13 A;  4E5E A;  4CGS A;  4E5F A;  4AVG A;  5CGV A;  5DES A;  5EGA A;  4E5H A;  4AWH A;  4AWG A;  5D4G A;  5JHV A;  5D8U A;  3HW6 A; 
#chains in the Genus database with same CATH topology
 2XI5 A;  5D42 A;  1ES8 A;  2P0J A;  4ZQQ A;  4ZI0 A;  1DFM A;  1M0D A;  4E5L A;  3MQ6 A;  4AWF A;  2FQZ A;  4AVL A;  4E5G A;  4F0P A;  4AVQ A;  3WVK A;  1BAM A;  3DVO A;  4F0Q A;  4E5J A;  3V21 A;  3BAM A;  5CCY A;  2EWF A;  3MQY A;  4E5E A;  4E5F A;  1SDO A;  4E5H A;  5JHV A;  3WVP A;  4AWK A;  3DW9 A;  1BHM A;  3EBJ A;  2PFJ A;  3HW4 A;  3DPG A;  5D2O A;  3N78 A;  4R28 A;  5FDG A;  4OC8 A;  3WVI A;  4AWM A;  3BM3 A;  4AVG A;  3N7B A;  2FOK A;  5EGA A;  4AWG A;  5D4G A;  1CFR A;  3HW6 A;  3ODH A;  2XI7 A;  4YYL A;  2BAM A;  3HW3 A;  1FZR A;  1D2I A;  4NFZ A;  1KNV A;  1DC1 A;  5I13 A;  3WVG A;  5CGV A;  5DES A;  4AWH A;  5D8U A;  4E5I A;  5DBS A;  4CHC A;  4CGX A;  1M0I A;  1FOK A;  5FDD A;  5JHT A;  5CZN A;  2P14 A;  2E52 A;  3HW5 A;  5DEB A;  5CL0 A;  3A4K A;  3WVH A;  3CAE A;  5D9J A;  3V20 A;  1VRR A;  4ZHZ A;  4CGS A;  3V1Z A;  2GB7 A;  1ESG A; 
#chains in the Genus database with same CATH homology
 2XI5 A;  5D42 A;  1ES8 A;  2P0J A;  4ZQQ A;  4ZI0 A;  1DFM A;  1M0D A;  4E5L A;  3MQ6 A;  4AWF A;  2FQZ A;  4AVL A;  4E5G A;  4F0P A;  4AVQ A;  3WVK A;  1BAM A;  3DVO A;  4F0Q A;  4E5J A;  3V21 A;  3BAM A;  5CCY A;  2EWF A;  3MQY A;  4E5E A;  4E5F A;  1SDO A;  4E5H A;  5JHV A;  3WVP A;  4AWK A;  3DW9 A;  1BHM A;  3EBJ A;  2PFJ A;  3HW4 A;  3DPG A;  5D2O A;  3N78 A;  4R28 A;  5FDG A;  4OC8 A;  3WVI A;  4AWM A;  3BM3 A;  4AVG A;  3N7B A;  2FOK A;  5EGA A;  4AWG A;  5D4G A;  1CFR A;  3HW6 A;  3ODH A;  2XI7 A;  4YYL A;  2BAM A;  3HW3 A;  1FZR A;  1D2I A;  4NFZ A;  1KNV A;  1DC1 A;  5I13 A;  3WVG A;  5CGV A;  5DES A;  4AWH A;  5D8U A;  4E5I A;  5DBS A;  4CHC A;  4CGX A;  1M0I A;  1FOK A;  5FDD A;  5JHT A;  5CZN A;  2P14 A;  2E52 A;  3HW5 A;  5DEB A;  5CL0 A;  3A4K A;  3WVH A;  3CAE A;  5D9J A;  3V20 A;  1VRR A;  4ZHZ A;  4CGS A;  3V1Z A;  2GB7 A;  1ESG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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