4CKNA

Structure of an n-terminal fragment of leishmania sas-6 containing parts of its coiled coil domain, f257e mutant
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
184
structure length
178
Chain Sequence
PQTLLETTVMVSTKMPPHEPQVRPLGVYVRTGRGGPNGVTRVVLVRLTDPTDPFFLFELELLEDDYNAFKQHLELLVDFHGFPRYLVGMLRDIADGASAYELSFVLNSNRGTLRVLETTDEKTVEHISLVLLRQGDAGLKRYLAERFQHYEQSFRASEASRAVITAELQEKIGDLQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the SAS-6 cartwheel hub from Leishmania major.
pubmed doi rcsb
molecule tags Structural protein
source organism Leishmania major
molecule keywords SAS-6
total genus 45
structure length 178
sequence length 184
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16531 SAS-6_N Centriolar protein SAS N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.20 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 Dna Repair Protein Xrcc4; Chain: A, domain 1 4cknA00
2Y3VA 4GFAA 3Q0XA 4CKMA 4CKNA 4GFCA 3PYIA 3Q0YA 4G79A 2Y3WA 4GEUA 4CKPA 4GEXA
chains in the Genus database with same CATH superfamily
2Y3VA 4CKNA 5CJ4A 3Q0YA 5CHXA 2QM4A 1FU1A 2R9AA 3RWRD 4G79A 2Y3WA 4GEUA 3MUDA 4CKPA 4XA4A 3SR2A 4GFAA 3II6A 3Q0XA 5CJ0A 4GFCA 3PYIA 4CKMA 3RWRA 3SR2C 1IK9A 4GEXA
chains in the Genus database with same CATH topology
2Y3VA 4GFAA 3Q0XA 4CKMA 4CKNA 4GFCA 3PYIA 3Q0YA 4G79A 2Y3WA 4GEUA 4CKPA 4GEXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y3V A;  4GFA A;  3Q0X A;  4CKM A;  4CKN A;  4GFC A;  3PYI A;  3Q0Y A;  4G79 A;  2Y3W A;  4GEU A;  4CKP A;  4GEX A; 
#chains in the Genus database with same CATH topology
 2Y3V A;  4CKN A;  5CJ4 A;  3Q0Y A;  5CHX A;  2QM4 A;  1FU1 A;  2R9A A;  3RWR D;  4G79 A;  2Y3W A;  4GEU A;  3MUD A;  4CKP A;  4XA4 A;  3SR2 A;  4GFA A;  3II6 A;  3Q0X A;  5CJ0 A;  4GFC A;  3PYI A;  4CKM A;  3RWR A;  3SR2 C;  1IK9 A;  4GEX A; 
#chains in the Genus database with same CATH homology
 2Y3V A;  4GFA A;  3Q0X A;  4CKM A;  4CKN A;  4GFC A;  3PYI A;  3Q0Y A;  4G79 A;  2Y3W A;  4GEU A;  4CKP A;  4GEX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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