4CO9A

Crystal structure of kynurenine formamidase from bacillus anthracis
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
207
structure length
207
Chain Sequence
TSKWIDISQPLNNDIATWPGDTPFSYEVLWSKEESGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQVYVGPTRIIDVSNLESIGKKELEKFHLEGVERLLLRTSSHGKANEFPDIIPHLRADIAPFLSEKGIRLIGVDVPSVDPLDDKELAAHHQLFKHSIHILENVVLDHVADGDYELIALPLALSDADGSPVRAVIRPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile.
pubmed doi rcsb
source organism Bacillus anthracis
molecule tags Hydrolase
molecule keywords KYNURENINE FORMAMIDASE
total genus 54
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.9: Arylformamidase.
pdb deposition date 2014-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4co9A00
4CO9A 4CZ1A 2B0AA 4COBA 4COGA 1R61A 4J0NA 3KRVA 4M8DA
chains in the Genus database with same CATH superfamily
4MJXA 4MCQA 4OC0A 2JBJA 2MP0A 3KASA 1A9XB 4P4BA 1NXJA 3ICUA 2XEJA 4C86A 4P45A 4P44A 5IR2A 4C8TA 1V6CA 4OC5A 3T07A 3BI0A 5F5XA 4P4EA 3FF3A 5F1YA 4JVOA 3D7GA 3SJFA 3U1BA 2OR4A 1CS0B 3EZBA 4IIYA 1KEEB 2CIJA 2HI6A 4MI1A 5F09A 3BI1A 4EYSA 2D0OA 1VBHA 5F9MA 4CDJA 3IWWA 1GGOA 1WVMA 3NOJA 3TLGB 3TYXA 3VTAA 1CE8B 4KNGE 4NGRA 4NGPA 5JVLA 3G23A 1M6VB 1NBWA 1VI4A 2PCNA 4NGNA 4C8CA 1Q5XA 4C99A 3SR3A 4CDKA 4NGMA 2C6PA 4NGSA 2JBKA 2C6GA 3EIFA 4YN3A 1ZRSA 4C9UA 5K99A 1T36B 1KC7A 1JDEA 4E5SA 2DIKA 2XEIA 4TJXA 4C8PA 3BHXA 1JDBC 2YJTA 3D7FA 4NGQA 2GP4A 3SJEA 3SJGA 1Y9ZA 2R82A 1XF1A 3TLAA 5D29A 2PVWA 2C5QA 4LQGA 1VBGA 4CO9A 4OC1A 2XEGA 3D7DA 4C9AA 2XEFA 3T0TA 5FD8A 5IB9A 4C9RA 3RBUA 3GJZA 3TLCA 4JYWA 5ELYA 1EZAA 2B0AA 3SJXA 3C8OA 3FECA 4JZ0A 3S9MA 1C30B 4OC2A 2AUNA 2D0PA 2YJVA 2C6CA 4MCPA 4P4FA 1DIKA 2AUMA 4CZ1A 4C8UA 2HROA 1J3LA 4W9YA 3S9NA 4E94A 1DE4C 4C84A 3I74A 4M8DA 2FM4A 3K9TA 4COBA 1BXRB 3FEEA 3IIBA 4C9EA 4P4JA 4COGA 1ZYMA 4C9VA 5JYBA 3K4IA 4OMEA 3S9LA 2HWGA 3KRVA 4MCRA 2E28A 2OOTA 3TLYA 3T5MA 4C8FA 3TLZA 1ZL0A 1EZBA 3EZEA 4MCSA 2EZBA 3T05A 1C3OB 3FEDA 4P4IA 4TWEA 2EK8A 2X0SA 3TLBA 4P4DA 3TLEA 1KBLA 4H1HA 2EK9A 4C8AA 4NGTA 3D7HA 4INJA 3TLGA 2OLSA 1Z8LA 3BXMA 2EZAA 1CX8A 4C85A 2EZCA 4OC3A 4X3RA 3EZAA 3I6SA 4OC4A 2PVVA 4TJVA 1R61A 4J0NA 4IIXA
chains in the Genus database with same CATH topology
4CO9A 4CZ1A 2B0AA 4COBA 4COGA 1R61A 4J0NA 3KRVA 4M8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CO9 A;  4CZ1 A;  2B0A A;  4COB A;  4COG A;  1R61 A;  4J0N A;  3KRV A;  4M8D A; 
#chains in the Genus database with same CATH topology
 4MJX A;  4MCQ A;  4OC0 A;  2JBJ A;  2MP0 A;  3KAS A;  1A9X B;  4P4B A;  1NXJ A;  3ICU A;  2XEJ A;  4C86 A;  4P45 A;  4P44 A;  5IR2 A;  4C8T A;  1V6C A;  4OC5 A;  3T07 A;  3BI0 A;  5F5X A;  4P4E A;  3FF3 A;  5F1Y A;  4JVO A;  3D7G A;  3SJF A;  3U1B A;  2OR4 A;  1CS0 B;  3EZB A;  4IIY A;  1KEE B;  2CIJ A;  2HI6 A;  4MI1 A;  5F09 A;  3BI1 A;  4EYS A;  2D0O A;  1VBH A;  5F9M A;  4CDJ A;  3IWW A;  1GGO A;  1WVM A;  3NOJ A;  3TLG B;  3TYX A;  3VTA A;  1CE8 B;  4KNG E;  4NGR A;  4NGP A;  5JVL A;  3G23 A;  1M6V B;  1NBW A;  1VI4 A;  2PCN A;  4NGN A;  4C8C A;  1Q5X A;  4C99 A;  3SR3 A;  4CDK A;  4NGM A;  2C6P A;  4NGS A;  2JBK A;  2C6G A;  3EIF A;  4YN3 A;  1ZRS A;  4C9U A;  5K99 A;  1T36 B;  1KC7 A;  1JDE A;  4E5S A;  2DIK A;  2XEI A;  4TJX A;  4C8P A;  3BHX A;  1JDB C;  2YJT A;  3D7F A;  4NGQ A;  2GP4 A;  3SJE A;  3SJG A;  1Y9Z A;  2R82 A;  1XF1 A;  3TLA A;  5D29 A;  2PVW A;  2C5Q A;  4LQG A;  1VBG A;  4CO9 A;  4OC1 A;  2XEG A;  3D7D A;  4C9A A;  2XEF A;  3T0T A;  5FD8 A;  5IB9 A;  4C9R A;  3RBU A;  3GJZ A;  3TLC A;  4JYW A;  5ELY A;  1EZA A;  2B0A A;  3SJX A;  3C8O A;  3FEC A;  4JZ0 A;  3S9M A;  1C30 B;  4OC2 A;  2AUN A;  2D0P A;  2YJV A;  2C6C A;  4MCP A;  4P4F A;  1DIK A;  2AUM A;  4CZ1 A;  4C8U A;  2HRO A;  1J3L A;  4W9Y A;  3S9N A;  4E94 A;  1DE4 C;  4C84 A;  3I74 A;  4M8D A;  2FM4 A;  3K9T A;  4COB A;  1BXR B;  3FEE A;  3IIB A;  4C9E A;  4P4J A;  4COG A;  1ZYM A;  4C9V A;  5JYB A;  3K4I A;  4OME A;  3S9L A;  2HWG A;  3KRV A;  4MCR A;  2E28 A;  2OOT A;  3TLY A;  3T5M A;  4C8F A;  3TLZ A;  1ZL0 A;  1EZB A;  3EZE A;  4MCS A;  2EZB A;  3T05 A;  1C3O B;  3FED A;  4P4I A;  4TWE A;  2EK8 A;  2X0S A;  3TLB A;  4P4D A;  3TLE A;  1KBL A;  4H1H A;  2EK9 A;  4C8A A;  4NGT A;  3D7H A;  4INJ A;  3TLG A;  2OLS A;  1Z8L A;  3BXM A;  2EZA A;  1CX8 A;  4C85 A;  2EZC A;  4OC3 A;  4X3R A;  3EZA A;  3I6S A;  4OC4 A;  2PVV A;  4TJV A;  1R61 A;  4J0N A;  4IIX A; 
#chains in the Genus database with same CATH homology
 4CO9 A;  4CZ1 A;  2B0A A;  4COB A;  4COG A;  1R61 A;  4J0N A;  3KRV A;  4M8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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