4CO9A

Crystal structure of kynurenine formamidase from bacillus anthracis
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
207
structure length
207
Chain Sequence
TSKWIDISQPLNNDIATWPGDTPFSYEVLWSKEESGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQVYVGPTRIIDVSNLESIGKKELEKFHLEGVERLLLRTSSHGKANEFPDIIPHLRADIAPFLSEKGIRLIGVDVPSVDPLDDKELAAHHQLFKHSIHILENVVLDHVADGDYELIALPLALSDADGSPVRAVIRPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords KYNURENINE FORMAMIDASE
publication title Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile.
pubmed doi rcsb
source organism Bacillus anthracis
molecule tags Hydrolase
total genus 54
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.9: Arylformamidase.
pdb deposition date 2014-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4co9A00
3KRVA 1R61A 4J0NA 4COBA 4M8DA 2B0AA 4CO9A 4COGA 4CZ1A
chains in the Genus database with same CATH superfamily
2GP4A 3S9LA 1DIKA 4W9YA 4P4JA 3TLBA 3TLEA 4MJXA 4TJVA 1XF1A 4P45A 3T5MA 2DIKA 4C8CA 3FEEA 1KBLA 2HWGA 2PVVA 4H1HA 4YN3A 2EZAA 4OMEA 1J3LA 4P4FA 4C8PA 1C3OB 2C6GA 4C8FA 4CDJA 4C8AA 3TLZA 2X0SA 3FF3A 4P4BA 2D0PA 2HI6A 4C9UA 4NGRA 4C84A 4NGMA 4C9VA 3D7DA 1VBHA 3G23A 3K9TA 1VBGA 1JDEA 2E28A 3K4IA 4INJA 2R82A 3RBUA 3S9MA 2XEIA 1JDBC 1Q5XA 3I6SA 4CO9A 2XEFA 3BHXA 4CZ1A 1WVMA 2OR4A 3TLGB 5F5XA 3BI0A 1R61A 1CS0B 1ZYMA 3D7FA 4C9AA 1KC7A 2JBJA 4OC3A 3SJGA 4OC0A 3FECA 2C6PA 2EZCA 3T07A 3NOJA 3KRVA 5IR2A 2FM4A 2YJTA 3BI1A 4M8DA 3D7GA 2MP0A 5FD8A 4P4EA 2YJVA 4KNGE 1BXRB 5K99A 4MCQA 2EK8A 2XEJA 1KEEB 4C8UA 5F9MA 3IIBA 4EYSA 4NGPA 4JYWA 2C6CA 5ELYA 2AUMA 1T36B 3SR3A 4LQGA 4MCSA 3IWWA 4NGNA 4C86A 1ZRSA 1GGOA 1V6CA 3EIFA 3ICUA 3VTAA 3T0TA 4C99A 4C9RA 4P4IA 3U1BA 2HROA 3TLAA 4OC4A 4P4DA 4IIYA 2PCNA 3SJFA 4TJXA 3TLCA 3FEDA 3EZEA 1C30B 1ZL0A 3SJXA 4C8TA 4NGTA 3EZBA 5D29A 1NBWA 3T05A 2OLSA 3D7HA 4J0NA 3TLYA 2B0AA 2XEGA 4MCRA 4CDKA 3TYXA 4COGA 2AUNA 3BXMA 2D0OA 4OC5A 2EZBA 5JVLA 3GJZA 3EZAA 4X3RA 3KASA 4JZ0A 1CE8B 4E94A 1Y9ZA 1EZAA 4JVOA 4MCPA 1DE4C 2CIJA 4TWEA 4E5SA 3S9NA 4COBA 5IB9A 5JYBA 4OC1A 5F09A 4P44A 4OC2A 1VI4A 2OOTA 1CX8A 3C8OA 5F1YA 4NGSA 2EK9A 2C5QA 4IIXA 3SJEA 4C85A 2PVWA 3TLGA 4C9EA 4NGQA 2JBKA 1NXJA 3I74A 1A9XB 1EZBA 1Z8LA 1M6VB 4MI1A
chains in the Genus database with same CATH topology
3KRVA 1R61A 4J0NA 4COBA 4M8DA 2B0AA 4CO9A 4COGA 4CZ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KRV A;  1R61 A;  4J0N A;  4COB A;  4M8D A;  2B0A A;  4CO9 A;  4COG A;  4CZ1 A; 
#chains in the Genus database with same CATH topology
 2GP4 A;  3S9L A;  1DIK A;  4W9Y A;  4P4J A;  3TLB A;  3TLE A;  4MJX A;  4TJV A;  1XF1 A;  4P45 A;  3T5M A;  2DIK A;  4C8C A;  3FEE A;  1KBL A;  2HWG A;  2PVV A;  4H1H A;  4YN3 A;  2EZA A;  4OME A;  1J3L A;  4P4F A;  4C8P A;  1C3O B;  2C6G A;  4C8F A;  4CDJ A;  4C8A A;  3TLZ A;  2X0S A;  3FF3 A;  4P4B A;  2D0P A;  2HI6 A;  4C9U A;  4NGR A;  4C84 A;  4NGM A;  4C9V A;  3D7D A;  1VBH A;  3G23 A;  3K9T A;  1VBG A;  1JDE A;  2E28 A;  3K4I A;  4INJ A;  2R82 A;  3RBU A;  3S9M A;  2XEI A;  1JDB C;  1Q5X A;  3I6S A;  4CO9 A;  2XEF A;  3BHX A;  4CZ1 A;  1WVM A;  2OR4 A;  3TLG B;  5F5X A;  3BI0 A;  1R61 A;  1CS0 B;  1ZYM A;  3D7F A;  4C9A A;  1KC7 A;  2JBJ A;  4OC3 A;  3SJG A;  4OC0 A;  3FEC A;  2C6P A;  2EZC A;  3T07 A;  3NOJ A;  3KRV A;  5IR2 A;  2FM4 A;  2YJT A;  3BI1 A;  4M8D A;  3D7G A;  2MP0 A;  5FD8 A;  4P4E A;  2YJV A;  4KNG E;  1BXR B;  5K99 A;  4MCQ A;  2EK8 A;  2XEJ A;  1KEE B;  4C8U A;  5F9M A;  3IIB A;  4EYS A;  4NGP A;  4JYW A;  2C6C A;  5ELY A;  2AUM A;  1T36 B;  3SR3 A;  4LQG A;  4MCS A;  3IWW A;  4NGN A;  4C86 A;  1ZRS A;  1GGO A;  1V6C A;  3EIF A;  3ICU A;  3VTA A;  3T0T A;  4C99 A;  4C9R A;  4P4I A;  3U1B A;  2HRO A;  3TLA A;  4OC4 A;  4P4D A;  4IIY A;  2PCN A;  3SJF A;  4TJX A;  3TLC A;  3FED A;  3EZE A;  1C30 B;  1ZL0 A;  3SJX A;  4C8T A;  4NGT A;  3EZB A;  5D29 A;  1NBW A;  3T05 A;  2OLS A;  3D7H A;  4J0N A;  3TLY A;  2B0A A;  2XEG A;  4MCR A;  4CDK A;  3TYX A;  4COG A;  2AUN A;  3BXM A;  2D0O A;  4OC5 A;  2EZB A;  5JVL A;  3GJZ A;  3EZA A;  4X3R A;  3KAS A;  4JZ0 A;  1CE8 B;  4E94 A;  1Y9Z A;  1EZA A;  4JVO A;  4MCP A;  1DE4 C;  2CIJ A;  4TWE A;  4E5S A;  3S9N A;  4COB A;  5IB9 A;  5JYB A;  4OC1 A;  5F09 A;  4P44 A;  4OC2 A;  1VI4 A;  2OOT A;  1CX8 A;  3C8O A;  5F1Y A;  4NGS A;  2EK9 A;  2C5Q A;  4IIX A;  3SJE A;  4C85 A;  2PVW A;  3TLG A;  4C9E A;  4NGQ A;  2JBK A;  1NXJ A;  3I74 A;  1A9X B;  1EZB A;  1Z8L A;  1M6V B;  4MI1 A; 
#chains in the Genus database with same CATH homology
 3KRV A;  1R61 A;  4J0N A;  4COB A;  4M8D A;  2B0A A;  4CO9 A;  4COG A;  4CZ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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