4CO9A

Crystal structure of kynurenine formamidase from bacillus anthracis
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
207
structure length
207
Chain Sequence
TSKWIDISQPLNNDIATWPGDTPFSYEVLWSKEESGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQVYVGPTRIIDVSNLESIGKKELEKFHLEGVERLLLRTSSHGKANEFPDIIPHLRADIAPFLSEKGIRLIGVDVPSVDPLDDKELAAHHQLFKHSIHILENVVLDHVADGDYELIALPLALSDADGSPVRAVIRPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords KYNURENINE FORMAMIDASE
publication title Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile.
pubmed doi rcsb
source organism Bacillus anthracis
molecule tags Hydrolase
total genus 54
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.9: Arylformamidase.
pdb deposition date 2014-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4co9A00
4COGA 4CO9A 1R61A 2B0AA 4COBA 3KRVA 4M8DA 4CZ1A 4J0NA
chains in the Genus database with same CATH superfamily
2C6PA 5F09A 1JDBC 1CE8B 3S9MA 1T36B 2HROA 5IR2A 2OOTA 2XEIA 3D7DA 5JVLA 3BHXA 3D7GA 1JDEA 3C8OA 4EYSA 2MP0A 3TYXA 4IIXA 3TLAA 4OC2A 4MJXA 4CO9A 2EZCA 1DE4C 3ICUA 1VBGA 3D7FA 4C9AA 2AUNA 3TLGA 3S9NA 1ZRSA 1EZBA 3FEDA 3TLEA 2HWGA 3TLGB 1WVMA 4YN3A 3BI1A 4KNGE 3SJEA 3K4IA 4C85A 3TLCA 1KEEB 4OC5A 2GP4A 4NGSA 4OC3A 4COBA 5ELYA 2X0SA 3SJXA 3U1BA 2YJTA 1M6VB 4MCPA 1CX8A 3D7HA 4NGTA 4OC1A 4P45A 4CDKA 1Q5XA 3FF3A 4OC0A 4TJXA 3RBUA 4NGMA 2HI6A 4LQGA 4COGA 3IIBA 2EK8A 2XEFA 3GJZA 3I6SA 1DIKA 2B0AA 3EZAA 4P44A 3EIFA 4P4JA 4OC4A 3SR3A 5IB9A 3KRVA 4C9EA 3S9LA 4TWEA 4J0NA 4NGPA 2D0PA 4W9YA 2D0OA 4NGNA 4TJVA 2R82A 3FECA 1EZAA 5FD8A 2PVVA 2PCNA 4C8FA 3T07A 3EZBA 2FM4A 4JVOA 4C8TA 2AUMA 1V6CA 2OLSA 4MCRA 1R61A 2XEJA 2JBKA 1NBWA 3VTAA 1Z8LA 4NGQA 4MI1A 1CS0B 2C5QA 5JYBA 1VI4A 1ZYMA 4C8PA 4P4BA 4C84A 1KBLA 2EZAA 2JBJA 3IWWA 4MCSA 4X3RA 4C8CA 2XEGA 4M8DA 4P4DA 4C9VA 4E94A 1C30B 3KASA 1KC7A 2E28A 4P4IA 3FEEA 1ZL0A 3K9TA 5K99A 3TLBA 3T05A 3EZEA 4OMEA 3G23A 1C3OB 1BXRB 4H1HA 3I74A 2CIJA 4INJA 3T5MA 4P4FA 2EK9A 1J3LA 4C9UA 3BXMA 5F9MA 3T0TA 2OR4A 4IIYA 4C99A 4C86A 2C6GA 3BI0A 1XF1A 1Y9ZA 4E5SA 4NGRA 1NXJA 2DIKA 2PVWA 3TLZA 3TLYA 1GGOA 1A9XB 3SJFA 4C9RA 2YJVA 2C6CA 3SJGA 4JZ0A 5D29A 4CDJA 4C8UA 4MCQA 3NOJA 4CZ1A 5F1YA 4C8AA 1VBHA 4JYWA 4P4EA 5F5XA 2EZBA
chains in the Genus database with same CATH topology
4COGA 4CO9A 1R61A 2B0AA 4COBA 3KRVA 4M8DA 4CZ1A 4J0NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4COG A;  4CO9 A;  1R61 A;  2B0A A;  4COB A;  3KRV A;  4M8D A;  4CZ1 A;  4J0N A; 
#chains in the Genus database with same CATH topology
 2C6P A;  5F09 A;  1JDB C;  1CE8 B;  3S9M A;  1T36 B;  2HRO A;  5IR2 A;  2OOT A;  2XEI A;  3D7D A;  5JVL A;  3BHX A;  3D7G A;  1JDE A;  3C8O A;  4EYS A;  2MP0 A;  3TYX A;  4IIX A;  3TLA A;  4OC2 A;  4MJX A;  4CO9 A;  2EZC A;  1DE4 C;  3ICU A;  1VBG A;  3D7F A;  4C9A A;  2AUN A;  3TLG A;  3S9N A;  1ZRS A;  1EZB A;  3FED A;  3TLE A;  2HWG A;  3TLG B;  1WVM A;  4YN3 A;  3BI1 A;  4KNG E;  3SJE A;  3K4I A;  4C85 A;  3TLC A;  1KEE B;  4OC5 A;  2GP4 A;  4NGS A;  4OC3 A;  4COB A;  5ELY A;  2X0S A;  3SJX A;  3U1B A;  2YJT A;  1M6V B;  4MCP A;  1CX8 A;  3D7H A;  4NGT A;  4OC1 A;  4P45 A;  4CDK A;  1Q5X A;  3FF3 A;  4OC0 A;  4TJX A;  3RBU A;  4NGM A;  2HI6 A;  4LQG A;  4COG A;  3IIB A;  2EK8 A;  2XEF A;  3GJZ A;  3I6S A;  1DIK A;  2B0A A;  3EZA A;  4P44 A;  3EIF A;  4P4J A;  4OC4 A;  3SR3 A;  5IB9 A;  3KRV A;  4C9E A;  3S9L A;  4TWE A;  4J0N A;  4NGP A;  2D0P A;  4W9Y A;  2D0O A;  4NGN A;  4TJV A;  2R82 A;  3FEC A;  1EZA A;  5FD8 A;  2PVV A;  2PCN A;  4C8F A;  3T07 A;  3EZB A;  2FM4 A;  4JVO A;  4C8T A;  2AUM A;  1V6C A;  2OLS A;  4MCR A;  1R61 A;  2XEJ A;  2JBK A;  1NBW A;  3VTA A;  1Z8L A;  4NGQ A;  4MI1 A;  1CS0 B;  2C5Q A;  5JYB A;  1VI4 A;  1ZYM A;  4C8P A;  4P4B A;  4C84 A;  1KBL A;  2EZA A;  2JBJ A;  3IWW A;  4MCS A;  4X3R A;  4C8C A;  2XEG A;  4M8D A;  4P4D A;  4C9V A;  4E94 A;  1C30 B;  3KAS A;  1KC7 A;  2E28 A;  4P4I A;  3FEE A;  1ZL0 A;  3K9T A;  5K99 A;  3TLB A;  3T05 A;  3EZE A;  4OME A;  3G23 A;  1C3O B;  1BXR B;  4H1H A;  3I74 A;  2CIJ A;  4INJ A;  3T5M A;  4P4F A;  2EK9 A;  1J3L A;  4C9U A;  3BXM A;  5F9M A;  3T0T A;  2OR4 A;  4IIY A;  4C99 A;  4C86 A;  2C6G A;  3BI0 A;  1XF1 A;  1Y9Z A;  4E5S A;  4NGR A;  1NXJ A;  2DIK A;  2PVW A;  3TLZ A;  3TLY A;  1GGO A;  1A9X B;  3SJF A;  4C9R A;  2YJV A;  2C6C A;  3SJG A;  4JZ0 A;  5D29 A;  4CDJ A;  4C8U A;  4MCQ A;  3NOJ A;  4CZ1 A;  5F1Y A;  4C8A A;  1VBH A;  4JYW A;  4P4E A;  5F5X A;  2EZB A; 
#chains in the Genus database with same CATH homology
 4COG A;  4CO9 A;  1R61 A;  2B0A A;  4COB A;  3KRV A;  4M8D A;  4CZ1 A;  4J0N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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