4CT3A

Methylmercury chloride derivative structure of the lytic chapk domain of the endolysin lysk from staphylococcus aureus bacteriophage k
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
164
structure length
163
Chain Sequence
AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords ORF30/ORF32
publication title Crystal structure of the lytic CHAP(K) domain of the endolysin LysK from Staphylococcus aureus bacteriophage K.
pubmed doi rcsb
source organism Staphylococcus phage k
total genus 46
structure length 163
sequence length 164
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4ct3A00
2LRJA 4R0KA 4EOBA 3PBIA 3S0QA 2K1GA 2HBWA 3PBCA 4OLKA 4HZ9A 4Q4NA 4FDYA 2K3AA 4CGKA 2IO9A 3I86A 3KW0A 3M1UA 4FGDA 3A2YA 4F0WA 2VOBA 4FGIA 3GT2A 4CSHA 4EQAA 2EVRA 2VPSA 2IOBA 2IOAA 3NPFA 2FG0A 4JXBA 2IO8A 3VPJA 4CT3A 2VPMA 4F0VA 4Q4GX 3O98A 3A2ZA 2XIVA 4FGEA 4FQAA 4LJ1A 4Q4TA 4HPEA 2IO7A 4FQBA 4HZBA 3NE0A 2IF6A 3PVQA 4F4MA 3A30A 3VPIA 3H41A 4EQ8A
chains in the Genus database with same CATH superfamily
2LRJA 4R0KA 4EOBA 4HFFA 3PBIA 3S0QA 2K1GA 2HBWA 3PBCA 4OLKA 4HZ9A 4Q4NA 4FDYA 2K3AA 4CGKA 2IO9A 3I86A 3KW0A 3M1UA 4FGDA 4J32A 3A2YA 4F0WA 2VOBA 4FGIA 3GT2A 4CSHA 4EQAA 2EVRA 2VPSA 2IOBA 2IOAA 3NPFA 3EBQA 4J30A 2FG0A 4JXBA 2IO8A 3VPJA 4CT3A 4JURA 2VPMA 4F0VA 4Q4GX 3O98A 3A2ZA 2XIVA 4FGEA 4FQAA 4LJ1A 4HFKA 4Q4TA 4HPEA 2IO7A 4HFLA 4FQBA 4HZBA 3NE0A 2IF6A 3PVQA 4F4MA 3A30A 3VPIA 2WP7A 3H41A 4EQ8A
chains in the Genus database with same CATH topology
2LRJA 4R0KA 4EOBA 3PBIA 3S0QA 2K1GA 2HBWA 3PBCA 4OLKA 4HZ9A 4Q4NA 4FDYA 2K3AA 4CGKA 2IO9A 3I86A 3KW0A 3M1UA 4FGDA 3A2YA 4F0WA 2VOBA 4FGIA 3GT2A 4CSHA 4EQAA 2EVRA 2VPSA 2IOBA 2IOAA 3NPFA 2FG0A 4JXBA 2IO8A 3VPJA 4CT3A 2VPMA 4F0VA 4Q4GX 3O98A 3A2ZA 2XIVA 4FGEA 4FQAA 4LJ1A 4Q4TA 4HPEA 2IO7A 4FQBA 4HZBA 3NE0A 2IF6A 3PVQA 4F4MA 3A30A 3VPIA 3H41A 4EQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LRJ A;  4R0K A;  4EOB A;  3PBI A;  3S0Q A;  2K1G A;  2HBW A;  3PBC A;  4OLK A;  4HZ9 A;  4Q4N A;  4FDY A;  2K3A A;  4CGK A;  2IO9 A;  3I86 A;  3KW0 A;  3M1U A;  4FGD A;  3A2Y A;  4F0W A;  2VOB A;  4FGI A;  3GT2 A;  4CSH A;  4EQA A;  2EVR A;  2VPS A;  2IOB A;  2IOA A;  3NPF A;  2FG0 A;  4JXB A;  2IO8 A;  3VPJ A;  4CT3 A;  2VPM A;  4F0V A;  4Q4G X;  3O98 A;  3A2Z A;  2XIV A;  4FGE A;  4FQA A;  4LJ1 A;  4Q4T A;  4HPE A;  2IO7 A;  4FQB A;  4HZB A;  3NE0 A;  2IF6 A;  3PVQ A;  4F4M A;  3A30 A;  3VPI A;  3H41 A;  4EQ8 A; 
#chains in the Genus database with same CATH topology
 2LRJ A;  4R0K A;  4EOB A;  4HFF A;  3PBI A;  3S0Q A;  2K1G A;  2HBW A;  3PBC A;  4OLK A;  4HZ9 A;  4Q4N A;  4FDY A;  2K3A A;  4CGK A;  2IO9 A;  3I86 A;  3KW0 A;  3M1U A;  4FGD A;  4J32 A;  3A2Y A;  4F0W A;  2VOB A;  4FGI A;  3GT2 A;  4CSH A;  4EQA A;  2EVR A;  2VPS A;  2IOB A;  2IOA A;  3NPF A;  3EBQ A;  4J30 A;  2FG0 A;  4JXB A;  2IO8 A;  3VPJ A;  4CT3 A;  4JUR A;  2VPM A;  4F0V A;  4Q4G X;  3O98 A;  3A2Z A;  2XIV A;  4FGE A;  4FQA A;  4LJ1 A;  4HFK A;  4Q4T A;  4HPE A;  2IO7 A;  4HFL A;  4FQB A;  4HZB A;  3NE0 A;  2IF6 A;  3PVQ A;  4F4M A;  3A30 A;  3VPI A;  2WP7 A;  3H41 A;  4EQ8 A; 
#chains in the Genus database with same CATH homology
 2LRJ A;  4R0K A;  4EOB A;  3PBI A;  3S0Q A;  2K1G A;  2HBW A;  3PBC A;  4OLK A;  4HZ9 A;  4Q4N A;  4FDY A;  2K3A A;  4CGK A;  2IO9 A;  3I86 A;  3KW0 A;  3M1U A;  4FGD A;  3A2Y A;  4F0W A;  2VOB A;  4FGI A;  3GT2 A;  4CSH A;  4EQA A;  2EVR A;  2VPS A;  2IOB A;  2IOA A;  3NPF A;  2FG0 A;  4JXB A;  2IO8 A;  3VPJ A;  4CT3 A;  2VPM A;  4F0V A;  4Q4G X;  3O98 A;  3A2Z A;  2XIV A;  4FGE A;  4FQA A;  4LJ1 A;  4Q4T A;  4HPE A;  2IO7 A;  4FQB A;  4HZB A;  3NE0 A;  2IF6 A;  3PVQ A;  4F4M A;  3A30 A;  3VPI A;  3H41 A;  4EQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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