The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
297
|
sequence length |
917
|
structure length |
913
|
Chain Sequence |
GKASIHDLALQKWTVTNEYGNITVPGKFPSQAHLDLHAAGVIGESNNGLNDFDLRWIAAQNWTYTSKPISGLSKHSDIATWLVFDGLDTYATVKFCDHIVGTPDNQFRQWFYDVSSALASCKSDPVLSINFGSVPRIINAINASDEVQHWPASVVYPFEYPNRQWVRKEQNDFGWDWGPAFSPVGPWQPGRIVQLSKGGELYSLNTDIDIFRKGQFNNFAPDQTAPWVVNASLDFLGTLPKHASMSVIITDASVLYSGKLEGVTQSDMTVTGSVTIDAHKPKLWWPRDMGNQQLYNITVSVSSAGSKTPILVSQRRVGFRTILFSSGNITDAQIASGITPGNNWHFEINGHEFYAKGANLIPPDAFWPRVTSDRMNRLFDSVESQNFNMLRVWSSGTYLPDWIYDIADERGVLLWSEFQFSDTLYPDSDDFKANVVGEITYNVRRLNHHASLACWMGGNEFENLMLPIAQGADPATYPYVLGQYENLFITTLFNVLAANSHSISYSPCSANNGWLEIDLDLPVPIVERYYNTTSGHIYGDTDFYNYDTSVSFDTSAYPVGRFANEFGFISMPSIQTWQQAVDPEELSFNSTTVILRNHHYPAGGLTRNIHNSTLGQVEMTLAVERYYPTPDKTDPVANFSSWCHATQLFQADMYKSEIQFYRRGSGLPERQLGSLYWQLNDIWQAPTWAGLEYDGRWKVLPYVSRRTYEHVIASAFWNYTANELEIWVTSDLWEPVAGEVSLTWVDLKGKPIANNAGMTKSTKFNVGAINTTQIITANIQSDLKIPDTSDAVLVIELTAHGKLPNAASSKTTTFTHHNHFLPVWPNQAKVSDPKLHLSYNKSTKKFTVEATAGVSLYTWLTHPAGVLGFFDDNAFVLRPGEKKEVGFTLQQDTTGGKWTEQVTVESLWDLTTP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Insights into the structure and function of fungal beta-mannosidases from glycoside hydrolase family 2 based on multiple crystal structures of the Trichoderma harzianum enzyme.
pubmed doi rcsb |
| molecule keywords |
BETA-MANNOSIDASE
|
| molecule tags |
Hydrolase
|
| total genus |
297
|
| structure length |
913
|
| sequence length |
917
|
| ec nomenclature | |
| pdb deposition date | 2014-03-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00703 | Glyco_hydro_2 | Glycosyl hydrolases family 2 |
| A | PF17753 | Ig_mannosidase | Ig-fold domain |
| A | PF17786 | Mannosidase_ig | Mannosidase Ig/CBM-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
| Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases |
