4CYYA

The structure of vanin-1: defining the link between metabolic disease, oxidative stress and inflammation
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
464
structure length
461
Chain Sequence
DKQDTFIAAVYEHAAILPNATLTPVSREEALALMNRNLDILEGAITSAADQGAHIIVTPEDAIYGWNFNRDSLYPYLEDIPDPEVNWIPCNNRGQTPVQERLSCLAKNNSIYVVANIGDKKPCDTSDPQCPPDGRYQYNTDVVFDSQGKLVARYHKQNLFMGENQFNVPKEPEIVTFNTTFGSFGIFTCFDILFHDPAVTLVKDFHVDTIVFPTAWMNVLPHLSAVEFHSAWAMGMRVNFLASNIHYPSKKMTGSGIYAPNSSRAFHYDMKTEEGKLLLSQLDSHPSHSAVVNWTSYASSIEALSSGNKEFKGTVFFDEFTFVKLTGVAGNYTVCQKDLCCHLSYKMSENIPNEVYALGAFDGLHTVEGRYYLQICTLLKCKTTNLNTCGDSAETASTRFEMFSLSGTFGTQYVFPEVLLSENQLAPGEFQVSTDGRLFSLKPTSGPVLTVTLFGRLYEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PANTETHEINASE
publication title The Structure of Vanin-1: A Key Enzyme Linking Metabolic Disease and Inflammation
pubmed doi rcsb
source organism Homo sapiens
total genus 129
structure length 461
sequence length 464
ec nomenclature ec 3.5.1.92: Pantetheine hydrolase.
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 4cyyA01
4GYNA 3KI8A 3P8KA 2GGKA 3SEZA 2E2KA 3SZGA 5KHAA 4HGDA 3ILVA 5H8LA 4KZFA 2PLQA 4GYLA 4IZTA 5JQNA 2GGLA 2UXYA 2VHIA 3HKXA 3IVZA 3IW3A 1UF8A 1ERZA 2E2LA 4IZSA 1F89A 3SDBA 1EMSA 4HG5A 3DLAA 1UF4A 3KLCA 4H5UA 4CYGA 1UF5A 2DYUA 5H8IA 1UF7A 5H8JA 4CYFA 2W1VA 5H8KA 4IZUA 3N05A 4F4HA 1J31A 4LF0A 4IZWA 3SEQA 3WUYA 4HG3A 4IZVA 2DYVA 3SYTA 4CYYA 2E11A 2VHHA 1FO6A
chains in the Genus database with same CATH superfamily
4GYNA 3KI8A 3P8KA 2GGKA 3SEZA 2E2KA 3SZGA 5KHAA 4HGDA 3ILVA 5H8LA 4KZFA 2PLQA 4GYLA 4IZTA 5JQNA 2GGLA 2UXYA 2VHIA 3HKXA 3IVZA 3IW3A 1UF8A 1ERZA 2E2LA 4IZSA 1F89A 3SDBA 1EMSA 4HG5A 3DLAA 1UF4A 3KLCA 4H5UA 4CYGA 1UF5A 2DYUA 5H8IA 1UF7A 5H8JA 4CYFA 2W1VA 5H8KA 4IZUA 3N05A 4F4HA 1J31A 4LF0A 4IZWA 3SEQA 3WUYA 4HG3A 4IZVA 2DYVA 3SYTA 4CYYA 2E11A 2VHHA 1FO6A
chains in the Genus database with same CATH topology
4GYNA 3KI8A 3P8KA 2GGKA 3SEZA 2E2KA 3SZGA 5KHAA 4HGDA 3ILVA 5H8LA 4KZFA 2PLQA 4GYLA 4IZTA 5JQNA 2GGLA 2UXYA 2VHIA 3HKXA 3IVZA 3IW3A 1UF8A 1ERZA 2E2LA 4IZSA 1F89A 3SDBA 1EMSA 4HG5A 3DLAA 1UF4A 3KLCA 4H5UA 4CYGA 1UF5A 2DYUA 5H8IA 1UF7A 5H8JA 4CYFA 2W1VA 5H8KA 4IZUA 3N05A 4F4HA 1J31A 4LF0A 4IZWA 3SEQA 3WUYA 4HG3A 4IZVA 2DYVA 3SYTA 4CYYA 2E11A 2VHHA 1FO6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GYN A;  3KI8 A;  3P8K A;  2GGK A;  3SEZ A;  2E2K A;  3SZG A;  5KHA A;  4HGD A;  3ILV A;  5H8L A;  4KZF A;  2PLQ A;  4GYL A;  4IZT A;  5JQN A;  2GGL A;  2UXY A;  2VHI A;  3HKX A;  3IVZ A;  3IW3 A;  1UF8 A;  1ERZ A;  2E2L A;  4IZS A;  1F89 A;  3SDB A;  1EMS A;  4HG5 A;  3DLA A;  1UF4 A;  3KLC A;  4H5U A;  4CYG A;  1UF5 A;  2DYU A;  5H8I A;  1UF7 A;  5H8J A;  4CYF A;  2W1V A;  5H8K A;  4IZU A;  3N05 A;  4F4H A;  1J31 A;  4LF0 A;  4IZW A;  3SEQ A;  3WUY A;  4HG3 A;  4IZV A;  2DYV A;  3SYT A;  4CYY A;  2E11 A;  2VHH A;  1FO6 A; 
#chains in the Genus database with same CATH topology
 4GYN A;  3KI8 A;  3P8K A;  2GGK A;  3SEZ A;  2E2K A;  3SZG A;  5KHA A;  4HGD A;  3ILV A;  5H8L A;  4KZF A;  2PLQ A;  4GYL A;  4IZT A;  5JQN A;  2GGL A;  2UXY A;  2VHI A;  3HKX A;  3IVZ A;  3IW3 A;  1UF8 A;  1ERZ A;  2E2L A;  4IZS A;  1F89 A;  3SDB A;  1EMS A;  4HG5 A;  3DLA A;  1UF4 A;  3KLC A;  4H5U A;  4CYG A;  1UF5 A;  2DYU A;  5H8I A;  1UF7 A;  5H8J A;  4CYF A;  2W1V A;  5H8K A;  4IZU A;  3N05 A;  4F4H A;  1J31 A;  4LF0 A;  4IZW A;  3SEQ A;  3WUY A;  4HG3 A;  4IZV A;  2DYV A;  3SYT A;  4CYY A;  2E11 A;  2VHH A;  1FO6 A; 
#chains in the Genus database with same CATH homology
 4GYN A;  3KI8 A;  3P8K A;  2GGK A;  3SEZ A;  2E2K A;  3SZG A;  5KHA A;  4HGD A;  3ILV A;  5H8L A;  4KZF A;  2PLQ A;  4GYL A;  4IZT A;  5JQN A;  2GGL A;  2UXY A;  2VHI A;  3HKX A;  3IVZ A;  3IW3 A;  1UF8 A;  1ERZ A;  2E2L A;  4IZS A;  1F89 A;  3SDB A;  1EMS A;  4HG5 A;  3DLA A;  1UF4 A;  3KLC A;  4H5U A;  4CYG A;  1UF5 A;  2DYU A;  5H8I A;  1UF7 A;  5H8J A;  4CYF A;  2W1V A;  5H8K A;  4IZU A;  3N05 A;  4F4H A;  1J31 A;  4LF0 A;  4IZW A;  3SEQ A;  3WUY A;  4HG3 A;  4IZV A;  2DYV A;  3SYT A;  4CYY A;  2E11 A;  2VHH A;  1FO6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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