4CZ1A

Crystal structure of kynurenine formamidase from bacillus anthracis complexed with 2-aminoacetophenone.
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
207
structure length
207
Chain Sequence
TSKWIDISQPLNNDIATWPGDTPFSYEVLWSKEESGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQVYVGPTRIIDVSNLESIGKKELEKFHLEGVERLLLRTSSHGKANEFPDIIPHLRADIAPFLSEKGIRLIGVDVPSVDPLDDKELAAHHQLFKHSIHILENVVLDHVADGDYELIALPLALSDADGSPVRAVIRPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile.
pubmed doi rcsb
source organism Bacillus anthracis str. ames
molecule tags Hydrolase
molecule keywords KYNURENINE FORMAMIDASE
total genus 52
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.9: Arylformamidase.
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4cz1A00
1R61A 4COBA 4J0NA 3KRVA 4COGA 4CO9A 4CZ1A 2B0AA 4M8DA
chains in the Genus database with same CATH superfamily
1KEEB 4JVOA 3EZAA 2CIJA 4C85A 3KRVA 1CS0B 4P44A 3EIFA 4MCRA 2FM4A 4P4DA 5FD8A 4C84A 5IB9A 4IIYA 4JZ0A 2PVWA 3SJFA 3EZBA 4CO9A 2E28A 2EZAA 3D7FA 3EZEA 4CDKA 3VTAA 4OC5A 3S9NA 1DIKA 4C8TA 4NGTA 2AUMA 4X3RA 5F09A 1A9XB 2YJVA 4MCPA 4MCSA 4MJXA 3TLZA 2EZCA 4E5SA 3TLGB 4P45A 3TYXA 4C9EA 5JVLA 4OC0A 1JDEA 3S9MA 4C8CA 2XEIA 4M8DA 2C5QA 2OOTA 2JBKA 3FECA 2R82A 3TLCA 2OLSA 3NOJA 3FF3A 1R61A 2GP4A 4OC4A 4KNGE 3SJEA 3IIBA 4C99A 4NGQA 3SJXA 1WVMA 2HWGA 4MI1A 2OR4A 4C8AA 4W9YA 2PVVA 4EYSA 4C8FA 1M6VB 4E94A 4P4IA 4JYWA 1C3OB 3FEEA 1CE8B 2MP0A 3D7HA 3S9LA 4C8UA 3I6SA 3TLEA 1Y9ZA 3BI0A 2C6PA 2XEJA 3U1BA 1KC7A 2B0AA 4TJVA 5ELYA 3C8OA 4COGA 2C6GA 4P4EA 1EZBA 2HROA 3FEDA 3ICUA 1ZRSA 3BI1A 4P4JA 1J3LA 5F1YA 2C6CA 3G23A 4MCQA 4C9RA 1C30B 2XEFA 2YJTA 4C9VA 3D7GA 1BXRB 4TJXA 1GGOA 4P4FA 3TLBA 2D0PA 1NXJA 3TLGA 1VBGA 2EK9A 1CX8A 3D7DA 3K9TA 3BXMA 4H1HA 3T05A 4NGMA 4OC3A 1Q5XA 1Z8LA 2JBJA 3RBUA 5K99A 5D29A 4J0NA 1VBHA 3K4IA 3BHXA 1ZYMA 3SR3A 4CDJA 2XEGA 4OC1A 2PCNA 2D0OA 1EZAA 3I74A 4TWEA 5F9MA 4IIXA 3T07A 1KBLA 4LQGA 4YN3A 1V6CA 2AUNA 3T0TA 3GJZA 4NGPA 4NGSA 4C9AA 4NGRA 2X0SA 4COBA 4INJA 4OC2A 4C8PA 3IWWA 1T36B 1XF1A 1ZL0A 2HI6A 2EK8A 1NBWA 3TLYA 2DIKA 4NGNA 1DE4C 5IR2A 3TLAA 4C86A 2EZBA 4CZ1A 4C9UA 3T5MA 5JYBA 4P4BA 3SJGA 5F5XA 1JDBC 3KASA 4OMEA 1VI4A
chains in the Genus database with same CATH topology
1R61A 4COBA 4J0NA 3KRVA 4COGA 4CO9A 4CZ1A 2B0AA 4M8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R61 A;  4COB A;  4J0N A;  3KRV A;  4COG A;  4CO9 A;  4CZ1 A;  2B0A A;  4M8D A; 
#chains in the Genus database with same CATH topology
 1KEE B;  4JVO A;  3EZA A;  2CIJ A;  4C85 A;  3KRV A;  1CS0 B;  4P44 A;  3EIF A;  4MCR A;  2FM4 A;  4P4D A;  5FD8 A;  4C84 A;  5IB9 A;  4IIY A;  4JZ0 A;  2PVW A;  3SJF A;  3EZB A;  4CO9 A;  2E28 A;  2EZA A;  3D7F A;  3EZE A;  4CDK A;  3VTA A;  4OC5 A;  3S9N A;  1DIK A;  4C8T A;  4NGT A;  2AUM A;  4X3R A;  5F09 A;  1A9X B;  2YJV A;  4MCP A;  4MCS A;  4MJX A;  3TLZ A;  2EZC A;  4E5S A;  3TLG B;  4P45 A;  3TYX A;  4C9E A;  5JVL A;  4OC0 A;  1JDE A;  3S9M A;  4C8C A;  2XEI A;  4M8D A;  2C5Q A;  2OOT A;  2JBK A;  3FEC A;  2R82 A;  3TLC A;  2OLS A;  3NOJ A;  3FF3 A;  1R61 A;  2GP4 A;  4OC4 A;  4KNG E;  3SJE A;  3IIB A;  4C99 A;  4NGQ A;  3SJX A;  1WVM A;  2HWG A;  4MI1 A;  2OR4 A;  4C8A A;  4W9Y A;  2PVV A;  4EYS A;  4C8F A;  1M6V B;  4E94 A;  4P4I A;  4JYW A;  1C3O B;  3FEE A;  1CE8 B;  2MP0 A;  3D7H A;  3S9L A;  4C8U A;  3I6S A;  3TLE A;  1Y9Z A;  3BI0 A;  2C6P A;  2XEJ A;  3U1B A;  1KC7 A;  2B0A A;  4TJV A;  5ELY A;  3C8O A;  4COG A;  2C6G A;  4P4E A;  1EZB A;  2HRO A;  3FED A;  3ICU A;  1ZRS A;  3BI1 A;  4P4J A;  1J3L A;  5F1Y A;  2C6C A;  3G23 A;  4MCQ A;  4C9R A;  1C30 B;  2XEF A;  2YJT A;  4C9V A;  3D7G A;  1BXR B;  4TJX A;  1GGO A;  4P4F A;  3TLB A;  2D0P A;  1NXJ A;  3TLG A;  1VBG A;  2EK9 A;  1CX8 A;  3D7D A;  3K9T A;  3BXM A;  4H1H A;  3T05 A;  4NGM A;  4OC3 A;  1Q5X A;  1Z8L A;  2JBJ A;  3RBU A;  5K99 A;  5D29 A;  4J0N A;  1VBH A;  3K4I A;  3BHX A;  1ZYM A;  3SR3 A;  4CDJ A;  2XEG A;  4OC1 A;  2PCN A;  2D0O A;  1EZA A;  3I74 A;  4TWE A;  5F9M A;  4IIX A;  3T07 A;  1KBL A;  4LQG A;  4YN3 A;  1V6C A;  2AUN A;  3T0T A;  3GJZ A;  4NGP A;  4NGS A;  4C9A A;  4NGR A;  2X0S A;  4COB A;  4INJ A;  4OC2 A;  4C8P A;  3IWW A;  1T36 B;  1XF1 A;  1ZL0 A;  2HI6 A;  2EK8 A;  1NBW A;  3TLY A;  2DIK A;  4NGN A;  1DE4 C;  5IR2 A;  3TLA A;  4C86 A;  2EZB A;  4CZ1 A;  4C9U A;  3T5M A;  5JYB A;  4P4B A;  3SJG A;  5F5X A;  1JDB C;  3KAS A;  4OME A;  1VI4 A; 
#chains in the Genus database with same CATH homology
 1R61 A;  4COB A;  4J0N A;  3KRV A;  4COG A;  4CO9 A;  4CZ1 A;  2B0A A;  4M8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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