4CZ1A

Crystal structure of kynurenine formamidase from bacillus anthracis complexed with 2-aminoacetophenone.
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
207
structure length
207
Chain Sequence
TSKWIDISQPLNNDIATWPGDTPFSYEVLWSKEESGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQVYVGPTRIIDVSNLESIGKKELEKFHLEGVERLLLRTSSHGKANEFPDIIPHLRADIAPFLSEKGIRLIGVDVPSVDPLDDKELAAHHQLFKHSIHILENVVLDHVADGDYELIALPLALSDADGSPVRAVIRPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile.
pubmed doi rcsb
source organism Bacillus anthracis str. ames
molecule tags Hydrolase
molecule keywords KYNURENINE FORMAMIDASE
total genus 52
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.9: Arylformamidase.
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4cz1A00
4J0NA 4CO9A 4M8DA 4COGA 4CZ1A 1R61A 4COBA 3KRVA 2B0AA
chains in the Genus database with same CATH superfamily
3BHXA 2C6CA 4MCPA 4JZ0A 3T05A 2CIJA 4NGSA 1NBWA 4W9YA 2XEIA 5IR2A 3D7FA 3G23A 1Q5XA 1ZRSA 1A9XB 4INJA 3TLYA 4C8CA 2AUNA 2C6GA 4C9VA 3KRVA 4C9AA 2MP0A 1VBHA 4CZ1A 2XEFA 4IIYA 4OC2A 2B0AA 4NGQA 4H1HA 3SJEA 3EZAA 4P45A 3D7GA 4P4EA 4OC1A 3SJFA 1C30B 2OOTA 4C9UA 2PVVA 3EZEA 2OR4A 3GJZA 4P44A 4NGMA 4OMEA 3FECA 4C84A 2E28A 4C8PA 4MCRA 3NOJA 2EZBA 1DIKA 4NGPA 1VI4A 4C8FA 3RBUA 2XEJA 2YJVA 1R61A 1ZYMA 4C9EA 2X0SA 3ICUA 3TLBA 4E94A 4J0NA 4JVOA 4OC4A 5ELYA 4CO9A 3FEEA 3SJGA 2EK9A 4NGRA 2YJTA 4OC3A 1T36B 4C85A 4X3RA 5F9MA 4MCSA 3D7HA 3T0TA 5K99A 3TLGB 4C9RA 3S9NA 4NGTA 1VBGA 2PCNA 3U1BA 3KASA 5F09A 1V6CA 3I6SA 3EZBA 2EZAA 4TJVA 1NXJA 3TYXA 4TWEA 3IWWA 5D29A 5F1YA 2EZCA 1KEEB 3SR3A 3TLZA 4M8DA 3TLEA 1CE8B 3FEDA 3K9TA 2HI6A 4COBA 2OLSA 4P4JA 1JDBC 3TLAA 1EZAA 2DIKA 5FD8A 2AUMA 4OC0A 2FM4A 5JVLA 4P4IA 3S9LA 3T07A 1KBLA 4KNGE 1XF1A 3S9MA 5IB9A 1CX8A 4YN3A 2D0PA 2JBKA 2PVWA 3FF3A 2EK8A 4MJXA 2XEGA 4MI1A 1DE4C 3EIFA 1Y9ZA 3D7DA 4IIXA 1JDEA 3BI1A 1EZBA 2D0OA 1Z8LA 2GP4A 4C8TA 1KC7A 4P4BA 3I74A 3K4IA 4LQGA 3TLGA 4C8AA 2HWGA 1J3LA 2JBJA 4TJXA 1M6VB 5F5XA 3C8OA 5JYBA 1BXRB 4CDKA 2C6PA 3TLCA 4P4DA 4MCQA 4COGA 4P4FA 4OC5A 4C99A 1WVMA 3IIBA 3SJXA 3BXMA 1CS0B 1C3OB 4NGNA 2C5QA 4C8UA 2R82A 4CDJA 3VTAA 4E5SA 2HROA 4C86A 3BI0A 3T5MA 4EYSA 1GGOA 1ZL0A 4JYWA
chains in the Genus database with same CATH topology
4J0NA 4CO9A 4M8DA 4COGA 4CZ1A 1R61A 4COBA 3KRVA 2B0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J0N A;  4CO9 A;  4M8D A;  4COG A;  4CZ1 A;  1R61 A;  4COB A;  3KRV A;  2B0A A; 
#chains in the Genus database with same CATH topology
 3BHX A;  2C6C A;  4MCP A;  4JZ0 A;  3T05 A;  2CIJ A;  4NGS A;  1NBW A;  4W9Y A;  2XEI A;  5IR2 A;  3D7F A;  3G23 A;  1Q5X A;  1ZRS A;  1A9X B;  4INJ A;  3TLY A;  4C8C A;  2AUN A;  2C6G A;  4C9V A;  3KRV A;  4C9A A;  2MP0 A;  1VBH A;  4CZ1 A;  2XEF A;  4IIY A;  4OC2 A;  2B0A A;  4NGQ A;  4H1H A;  3SJE A;  3EZA A;  4P45 A;  3D7G A;  4P4E A;  4OC1 A;  3SJF A;  1C30 B;  2OOT A;  4C9U A;  2PVV A;  3EZE A;  2OR4 A;  3GJZ A;  4P44 A;  4NGM A;  4OME A;  3FEC A;  4C84 A;  2E28 A;  4C8P A;  4MCR A;  3NOJ A;  2EZB A;  1DIK A;  4NGP A;  1VI4 A;  4C8F A;  3RBU A;  2XEJ A;  2YJV A;  1R61 A;  1ZYM A;  4C9E A;  2X0S A;  3ICU A;  3TLB A;  4E94 A;  4J0N A;  4JVO A;  4OC4 A;  5ELY A;  4CO9 A;  3FEE A;  3SJG A;  2EK9 A;  4NGR A;  2YJT A;  4OC3 A;  1T36 B;  4C85 A;  4X3R A;  5F9M A;  4MCS A;  3D7H A;  3T0T A;  5K99 A;  3TLG B;  4C9R A;  3S9N A;  4NGT A;  1VBG A;  2PCN A;  3U1B A;  3KAS A;  5F09 A;  1V6C A;  3I6S A;  3EZB A;  2EZA A;  4TJV A;  1NXJ A;  3TYX A;  4TWE A;  3IWW A;  5D29 A;  5F1Y A;  2EZC A;  1KEE B;  3SR3 A;  3TLZ A;  4M8D A;  3TLE A;  1CE8 B;  3FED A;  3K9T A;  2HI6 A;  4COB A;  2OLS A;  4P4J A;  1JDB C;  3TLA A;  1EZA A;  2DIK A;  5FD8 A;  2AUM A;  4OC0 A;  2FM4 A;  5JVL A;  4P4I A;  3S9L A;  3T07 A;  1KBL A;  4KNG E;  1XF1 A;  3S9M A;  5IB9 A;  1CX8 A;  4YN3 A;  2D0P A;  2JBK A;  2PVW A;  3FF3 A;  2EK8 A;  4MJX A;  2XEG A;  4MI1 A;  1DE4 C;  3EIF A;  1Y9Z A;  3D7D A;  4IIX A;  1JDE A;  3BI1 A;  1EZB A;  2D0O A;  1Z8L A;  2GP4 A;  4C8T A;  1KC7 A;  4P4B A;  3I74 A;  3K4I A;  4LQG A;  3TLG A;  4C8A A;  2HWG A;  1J3L A;  2JBJ A;  4TJX A;  1M6V B;  5F5X A;  3C8O A;  5JYB A;  1BXR B;  4CDK A;  2C6P A;  3TLC A;  4P4D A;  4MCQ A;  4COG A;  4P4F A;  4OC5 A;  4C99 A;  1WVM A;  3IIB A;  3SJX A;  3BXM A;  1CS0 B;  1C3O B;  4NGN A;  2C5Q A;  4C8U A;  2R82 A;  4CDJ A;  3VTA A;  4E5S A;  2HRO A;  4C86 A;  3BI0 A;  3T5M A;  4EYS A;  1GGO A;  1ZL0 A;  4JYW A; 
#chains in the Genus database with same CATH homology
 4J0N A;  4CO9 A;  4M8D A;  4COG A;  4CZ1 A;  1R61 A;  4COB A;  3KRV A;  2B0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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