4CZ1A

Crystal structure of kynurenine formamidase from bacillus anthracis complexed with 2-aminoacetophenone.
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
207
structure length
207
Chain Sequence
TSKWIDISQPLNNDIATWPGDTPFSYEVLWSKEESGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQVYVGPTRIIDVSNLESIGKKELEKFHLEGVERLLLRTSSHGKANEFPDIIPHLRADIAPFLSEKGIRLIGVDVPSVDPLDDKELAAHHQLFKHSIHILENVVLDHVADGDYELIALPLALSDADGSPVRAVIRPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords KYNURENINE FORMAMIDASE
publication title Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile.
pubmed doi rcsb
source organism Bacillus anthracis str. ames
molecule tags Hydrolase
total genus 52
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.9: Arylformamidase.
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 4cz1A00
2B0AA 4CZ1A 1R61A 4COBA 4COGA 3KRVA 4J0NA 4CO9A 4M8DA
chains in the Genus database with same CATH superfamily
4OMEA 4YN3A 3T0TA 4MCRA 4TWEA 1VI4A 4P4JA 5JYBA 4P44A 1CS0B 3EZEA 5F1YA 3FECA 4C8AA 3TLBA 1CX8A 2CIJA 5D29A 4W9YA 1XF1A 3TLGA 1GGOA 5K99A 4C9RA 4MCPA 5F09A 2PCNA 3FEEA 4TJXA 3BI0A 3IWWA 1V6CA 4MJXA 4C84A 1Q5XA 4JYWA 4C86A 4CZ1A 3S9NA 5ELYA 2EZBA 2C5QA 2HWGA 2YJTA 1ZL0A 4TJVA 3TLYA 3EZBA 3TLGB 4C85A 2B0AA 4MCSA 5FD8A 1KC7A 4NGPA 4C8CA 3EZAA 2AUNA 4C8TA 4NGNA 4C8UA 3S9LA 4C9EA 2C6CA 3EIFA 2C6PA 3GJZA 4OC3A 3TLCA 1KBLA 4H1HA 4J0NA 1C3OB 4OC2A 3BI1A 4NGSA 2EK8A 3SJEA 4IIYA 4MCQA 2D0OA 5IB9A 2XEFA 2DIKA 3U1BA 1EZAA 4M8DA 3SJXA 5F5XA 3BHXA 3TLAA 2OLSA 1J3LA 1KEEB 5F9MA 4C8PA 3IIBA 3D7DA 3BXMA 4NGMA 4C8FA 3T05A 4OC4A 4P4EA 4CO9A 5JVLA 2JBKA 4P4FA 1ZRSA 3SJGA 3ICUA 3KASA 2GP4A 1Y9ZA 3TLZA 1NBWA 3C8OA 4NGTA 4X3RA 4C9AA 3VTAA 4E5SA 1DIKA 1JDEA 2EK9A 4E94A 4OC1A 1VBGA 3S9MA 1BXRB 4C9UA 4P45A 3TLEA 2XEGA 4P4BA 3I74A 4IIXA 4JVOA 1C30B 1Z8LA 3D7HA 4LQGA 3I6SA 4C9VA 3RBUA 4KNGE 1T36B 3FF3A 4OC0A 3T07A 3D7FA 2PVWA 3FEDA 2JBJA 1ZYMA 2FM4A 3D7GA 2X0SA 2XEJA 1NXJA 1A9XB 2C6GA 2OR4A 4NGRA 1EZBA 2D0PA 1VBHA 3KRVA 2HI6A 4MI1A 4INJA 1M6VB 2E28A 2EZAA 1CE8B 5IR2A 2EZCA 2HROA 3T5MA 4EYSA 3K9TA 4NGQA 2AUMA 4CDKA 3NOJA 1JDBC 1DE4C 2OOTA 3G23A 3SJFA 4P4DA 1WVMA 4COGA 4CDJA 4P4IA 4COBA 4C99A 4JZ0A 2YJVA 3TYXA 3SR3A 1R61A 2XEIA 2R82A 3K4IA 2MP0A 2PVVA 4OC5A
chains in the Genus database with same CATH topology
2B0AA 4CZ1A 1R61A 4COBA 4COGA 3KRVA 4J0NA 4CO9A 4M8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B0A A;  4CZ1 A;  1R61 A;  4COB A;  4COG A;  3KRV A;  4J0N A;  4CO9 A;  4M8D A; 
#chains in the Genus database with same CATH topology
 4OME A;  4YN3 A;  3T0T A;  4MCR A;  4TWE A;  1VI4 A;  4P4J A;  5JYB A;  4P44 A;  1CS0 B;  3EZE A;  5F1Y A;  3FEC A;  4C8A A;  3TLB A;  1CX8 A;  2CIJ A;  5D29 A;  4W9Y A;  1XF1 A;  3TLG A;  1GGO A;  5K99 A;  4C9R A;  4MCP A;  5F09 A;  2PCN A;  3FEE A;  4TJX A;  3BI0 A;  3IWW A;  1V6C A;  4MJX A;  4C84 A;  1Q5X A;  4JYW A;  4C86 A;  4CZ1 A;  3S9N A;  5ELY A;  2EZB A;  2C5Q A;  2HWG A;  2YJT A;  1ZL0 A;  4TJV A;  3TLY A;  3EZB A;  3TLG B;  4C85 A;  2B0A A;  4MCS A;  5FD8 A;  1KC7 A;  4NGP A;  4C8C A;  3EZA A;  2AUN A;  4C8T A;  4NGN A;  4C8U A;  3S9L A;  4C9E A;  2C6C A;  3EIF A;  2C6P A;  3GJZ A;  4OC3 A;  3TLC A;  1KBL A;  4H1H A;  4J0N A;  1C3O B;  4OC2 A;  3BI1 A;  4NGS A;  2EK8 A;  3SJE A;  4IIY A;  4MCQ A;  2D0O A;  5IB9 A;  2XEF A;  2DIK A;  3U1B A;  1EZA A;  4M8D A;  3SJX A;  5F5X A;  3BHX A;  3TLA A;  2OLS A;  1J3L A;  1KEE B;  5F9M A;  4C8P A;  3IIB A;  3D7D A;  3BXM A;  4NGM A;  4C8F A;  3T05 A;  4OC4 A;  4P4E A;  4CO9 A;  5JVL A;  2JBK A;  4P4F A;  1ZRS A;  3SJG A;  3ICU A;  3KAS A;  2GP4 A;  1Y9Z A;  3TLZ A;  1NBW A;  3C8O A;  4NGT A;  4X3R A;  4C9A A;  3VTA A;  4E5S A;  1DIK A;  1JDE A;  2EK9 A;  4E94 A;  4OC1 A;  1VBG A;  3S9M A;  1BXR B;  4C9U A;  4P45 A;  3TLE A;  2XEG A;  4P4B A;  3I74 A;  4IIX A;  4JVO A;  1C30 B;  1Z8L A;  3D7H A;  4LQG A;  3I6S A;  4C9V A;  3RBU A;  4KNG E;  1T36 B;  3FF3 A;  4OC0 A;  3T07 A;  3D7F A;  2PVW A;  3FED A;  2JBJ A;  1ZYM A;  2FM4 A;  3D7G A;  2X0S A;  2XEJ A;  1NXJ A;  1A9X B;  2C6G A;  2OR4 A;  4NGR A;  1EZB A;  2D0P A;  1VBH A;  3KRV A;  2HI6 A;  4MI1 A;  4INJ A;  1M6V B;  2E28 A;  2EZA A;  1CE8 B;  5IR2 A;  2EZC A;  2HRO A;  3T5M A;  4EYS A;  3K9T A;  4NGQ A;  2AUM A;  4CDK A;  3NOJ A;  1JDB C;  1DE4 C;  2OOT A;  3G23 A;  3SJF A;  4P4D A;  1WVM A;  4COG A;  4CDJ A;  4P4I A;  4COB A;  4C99 A;  4JZ0 A;  2YJV A;  3TYX A;  3SR3 A;  1R61 A;  2XEI A;  2R82 A;  3K4I A;  2MP0 A;  2PVV A;  4OC5 A; 
#chains in the Genus database with same CATH homology
 2B0A A;  4CZ1 A;  1R61 A;  4COB A;  4COG A;  3KRV A;  4J0N A;  4CO9 A;  4M8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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