4D2BA

Structure of a ligand free pot family peptide transporter
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
467
structure length
445
Chain Sequence
KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTANQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords DI-OR TRIPEPTIDE\:H+ SYMPORTER
publication title Structural Basis for Polyspecificity in the Pot Family of Proton-Coupled Oligopeptide Transporters.
pubmed doi rcsb
source organism Streptococcus thermophilus
total genus 176
structure length 445
sequence length 467
ec nomenclature
pdb deposition date 2014-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4d2bA00
4GBZA 4IKXA 4XNJA 4TPJA 3O7PA 4LDSA 4D2CA 4JA3A 2CFQA 4XNIA 4PYPA 4D2BA 5A2OA 4U4WA 4U4TA 2CFPA 1PV6A 5A2NA 2V8NA 4OH3A 4U4VA 4IKZA 4YBQA 5EQGA 5D59A 4OAAA 4TPGA 5D6KA 3WDOA 3O7QA 4ZWBA 4W6VA 4D2DA 4GC0A 4JREA 4UVMA 4ZWCA 4ZW9A 4IU9A 4APSA 4LEPA 5D58A 1PW4A 4IU8A 4IKWA 4IKYA 4JR9A 5C65A 4YB9D 2XUTA 5GXBA 1PV7A 4J05A 5EQIA 4QIQA 4Q65A 2Y5YA 4ZYRA 4GBYA 4TPHA 5EQHA 4IKVA
chains in the Genus database with same CATH superfamily
1J7VL 4TPJA 4NN7A 5C4XD 1P9MB 3EJJA 3D48P 1IARA 4A3DD 3INKC 3N06A 4NI9A 4APSA 2B8ZA 3QB7A 3NPZA 4IKXA 3O7PA 3FKID 1JLIA 4D2BA 4EXPA 1GA3A 1M4RA 4GS7A 1PVHB 4LEPA 3HHCA 1RHGA 4QIQA 1IL6A 2ILKA 2CFQA 3QT2C 1D9CA 3IRHA 4A3ID 5A2NA 4BXXD 1Y14A 2JA8D 2D48A 3PO3D 1RFBA 4YUEC 5D72A 1HUWA 2O26A 4IU8A 4RS1A 1PV7A 1AXIA 2IL6A 3VA2A 3DI3A 1SCFA 4LDSA 5D28B 4A93D 1LQSL 3PIWA 2R93D 3DUHC 4U4VA 4OAAA 1M4CA 1ITFA 2JA7D 1PW6A 3UX9A 2KZ1A 4TPHA 1LK3A 1ETEA 4IKVA 4O9HA 4XNIA 4A3GD 3DI2A 1FG9A 4Z5RD 3L5XA 5IYBD 1ITIA 4NEJA 4TPGA 5L6YC 1HIKA 4EXNA 4MHLA 4ZW9A 1KF9A 3Q1SI 4JR9A 4A3LD 3SE3B 1AX8A 1RCBA 1BBNA 4IKZA 5C7XA 4A3JD 5D6KA 3B5KA 3MZGA 4BY1D 4BBSD 1A22A 4A3KD 3EW3A 1D9GA 4A3ED 5FUCA 1Z92A 2XUTA 5LQBA 4J05A 3UF5A 2R92D 4NN5A 2R7ZD 4X51A 4D2CA 4A3BD 4JA3A 4YDYI 5IYCD 4U4TA 3H3VE 2V8NA 3O7QA 1I1RB 2LAGA 3N0PA 5TS9A 4NN6A 3LB6A 5IP7D 1M4AA 1Y1VD 3QWRB 3UF2A 1CSGA 1YKBA 3I4MD 1ALUA 3PO2D 1BUYA 2B91A 4PYPA 4O6KA 2B5IA 4J4LC 5EQGA 3L5WI 4CNIC 1HGUA 4BY7D 2XQBA 3BPLA 4NEMA 3HHRA 2B8YA 5C65A 5GXBA 2ERJD 2JA6D 3D87A 3DLQI 4GBYA 2B90A 1LKIA 1BCNA 1IK0A 1HWGA 3LB6B 1HIJA 5D59A 2B63D 4D2DA 1ITMA 5IYDD 3NCFA 5IP9D 3OG4A 1Y6ML 2Y5YA 1B5LA 2C35A 1V7NV 5C3ED 1RW5A 5D70A 2O6IA 1CD9A 4WRLB 3I4ND 1ILKA 3HOYD 1BGDA 4UVMA 1Y6NL 4IU9A 4DKFA 2E9WC 3DGCL 4YB9D 1HWHA 2PSMA 3OQ3A 4I77Z 3OG6A 1IRLA 1Y6KL 5A2OA 1PGRA 1HULA 3S9DA 1CN4C 3QAZA 2VUMD 4DKDA 5FHXA 5D58A 1PW4A 3NCEA 3QB1A 1EMRA 1QVNA 4Q65A 1WU3I 3NCCA 5EQHA 2OQPA 5D71A 3HOUD 2H24A 3PIVA 1PV6A 2HYMB 3G9VB 3WDOA 1AU1A 2LMSA 1M47A 3HOWD 1INRA 2GMFA 4IKYA 1WCMD 1A7MA 1EERA 3TGXB 1Z7CA 1BGCA 3UEZE 2L3OA 1IJZA 4NI7A 3G6DA 4U4WA 4A3CD 1BP3A 2CFPA 1F45B 4OH3A 1EKUA 3BPNA 4ZF7A 4W6VA 4GC0A 2INTA 1M48A 3HMXB 3WCYI 4IKWA 3D85C 2Q98A 4PS4A 3SE4B 4ZS7A 1F6FA 3HOZD 5E4EA 1FYHA 3NCBA 4XNJA 4DKEA 4A3MD 4YBQA 1HZIA 5FLMD 1NBPA 2O27A 1M49A 1ITLA 1PY2A 4LRLA 4JREA 4ZWCA 4DKCA 1VLKA 2D9QA 2B8XA 4DOHA 5C44D 1V7MV 1CYLA 3HOVD 4GBZA 5KNHI 2B8UA 4GRWA 1GNCA 3HOXD 4ZWBA 1M4BA 1EXZA 4BBRD 4NKQC 3AYHA 2Q7NB 5EQIA 1EVSA 3BPOA 1BGEA 4FA8E 1N1FA 1CNT1 2L3YA 4YPGC 3H0GD 2JA5D 4YQXA 5D22A 2Q14A 1Y1WD 2Z3QA 2CYKA 2Z3RA 4ZYRA 3BESL 4A3FD
chains in the Genus database with same CATH topology
4GBZA 4IKXA 4XNJA 4TPJA 3O7PA 4LDSA 4D2CA 4JA3A 2CFQA 4XNIA 4PYPA 4D2BA 5A2OA 4U4WA 4U4TA 2CFPA 1PV6A 5A2NA 2V8NA 4OH3A 4U4VA 4IKZA 4YBQA 5EQGA 5D59A 4OAAA 4TPGA 5D6KA 3WDOA 3O7QA 4ZWBA 4W6VA 4D2DA 4GC0A 4JREA 4UVMA 4ZWCA 4ZW9A 4IU9A 4APSA 4LEPA 5D58A 1PW4A 4IU8A 4IKWA 4IKYA 4JR9A 5C65A 4YB9D 2XUTA 5GXBA 1PV7A 4J05A 5EQIA 4QIQA 4Q65A 2Y5YA 4ZYRA 4GBYA 4TPHA 5EQHA 4IKVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GBZ A;  4IKX A;  4XNJ A;  4TPJ A;  3O7P A;  4LDS A;  4D2C A;  4JA3 A;  2CFQ A;  4XNI A;  4PYP A;  4D2B A;  5A2O A;  4U4W A;  4U4T A;  2CFP A;  1PV6 A;  5A2N A;  2V8N A;  4OH3 A;  4U4V A;  4IKZ A;  4YBQ A;  5EQG A;  5D59 A;  4OAA A;  4TPG A;  5D6K A;  3WDO A;  3O7Q A;  4ZWB A;  4W6V A;  4D2D A;  4GC0 A;  4JRE A;  4UVM A;  4ZWC A;  4ZW9 A;  4IU9 A;  4APS A;  4LEP A;  5D58 A;  1PW4 A;  4IU8 A;  4IKW A;  4IKY A;  4JR9 A;  5C65 A;  4YB9 D;  2XUT A;  5GXB A;  1PV7 A;  4J05 A;  5EQI A;  4QIQ A;  4Q65 A;  2Y5Y A;  4ZYR A;  4GBY A;  4TPH A;  5EQH A;  4IKV A; 
#chains in the Genus database with same CATH topology
 1J7V L;  4TPJ A;  4NN7 A;  5C4X D;  1P9M B;  3EJJ A;  3D48 P;  1IAR A;  4A3D D;  3INK C;  3N06 A;  4NI9 A;  4APS A;  2B8Z A;  3QB7 A;  3NPZ A;  4IKX A;  3O7P A;  3FKI D;  1JLI A;  4D2B A;  4EXP A;  1GA3 A;  1M4R A;  4GS7 A;  1PVH B;  4LEP A;  3HHC A;  1RHG A;  4QIQ A;  1IL6 A;  2ILK A;  2CFQ A;  3QT2 C;  1D9C A;  3IRH A;  4A3I D;  5A2N A;  4BXX D;  1Y14 A;  2JA8 D;  2D48 A;  3PO3 D;  1RFB A;  4YUE C;  5D72 A;  1HUW A;  2O26 A;  4IU8 A;  4RS1 A;  1PV7 A;  1AXI A;  2IL6 A;  3VA2 A;  3DI3 A;  1SCF A;  4LDS A;  5D28 B;  4A93 D;  1LQS L;  3PIW A;  2R93 D;  3DUH C;  4U4V A;  4OAA A;  1M4C A;  1ITF A;  2JA7 D;  1PW6 A;  3UX9 A;  2KZ1 A;  4TPH A;  1LK3 A;  1ETE A;  4IKV A;  4O9H A;  4XNI A;  4A3G D;  3DI2 A;  1FG9 A;  4Z5R D;  3L5X A;  5IYB D;  1ITI A;  4NEJ A;  4TPG A;  5L6Y C;  1HIK A;  4EXN A;  4MHL A;  4ZW9 A;  1KF9 A;  3Q1S I;  4JR9 A;  4A3L D;  3SE3 B;  1AX8 A;  1RCB A;  1BBN A;  4IKZ A;  5C7X A;  4A3J D;  5D6K A;  3B5K A;  3MZG A;  4BY1 D;  4BBS D;  1A22 A;  4A3K D;  3EW3 A;  1D9G A;  4A3E D;  5FUC A;  1Z92 A;  2XUT A;  5LQB A;  4J05 A;  3UF5 A;  2R92 D;  4NN5 A;  2R7Z D;  4X51 A;  4D2C A;  4A3B D;  4JA3 A;  4YDY I;  5IYC D;  4U4T A;  3H3V E;  2V8N A;  3O7Q A;  1I1R B;  2LAG A;  3N0P A;  5TS9 A;  4NN6 A;  3LB6 A;  5IP7 D;  1M4A A;  1Y1V D;  3QWR B;  3UF2 A;  1CSG A;  1YKB A;  3I4M D;  1ALU A;  3PO2 D;  1BUY A;  2B91 A;  4PYP A;  4O6K A;  2B5I A;  4J4L C;  5EQG A;  3L5W I;  4CNI C;  1HGU A;  4BY7 D;  2XQB A;  3BPL A;  4NEM A;  3HHR A;  2B8Y A;  5C65 A;  5GXB A;  2ERJ D;  2JA6 D;  3D87 A;  3DLQ I;  4GBY A;  2B90 A;  1LKI A;  1BCN A;  1IK0 A;  1HWG A;  3LB6 B;  1HIJ A;  5D59 A;  2B63 D;  4D2D A;  1ITM A;  5IYD D;  3NCF A;  5IP9 D;  3OG4 A;  1Y6M L;  2Y5Y A;  1B5L A;  2C35 A;  1V7N V;  5C3E D;  1RW5 A;  5D70 A;  2O6I A;  1CD9 A;  4WRL B;  3I4N D;  1ILK A;  3HOY D;  1BGD A;  4UVM A;  1Y6N L;  4IU9 A;  4DKF A;  2E9W C;  3DGC L;  4YB9 D;  1HWH A;  2PSM A;  3OQ3 A;  4I77 Z;  3OG6 A;  1IRL A;  1Y6K L;  5A2O A;  1PGR A;  1HUL A;  3S9D A;  1CN4 C;  3QAZ A;  2VUM D;  4DKD A;  5FHX A;  5D58 A;  1PW4 A;  3NCE A;  3QB1 A;  1EMR A;  1QVN A;  4Q65 A;  1WU3 I;  3NCC A;  5EQH A;  2OQP A;  5D71 A;  3HOU D;  2H24 A;  3PIV A;  1PV6 A;  2HYM B;  3G9V B;  3WDO A;  1AU1 A;  2LMS A;  1M47 A;  3HOW D;  1INR A;  2GMF A;  4IKY A;  1WCM D;  1A7M A;  1EER A;  3TGX B;  1Z7C A;  1BGC A;  3UEZ E;  2L3O A;  1IJZ A;  4NI7 A;  3G6D A;  4U4W A;  4A3C D;  1BP3 A;  2CFP A;  1F45 B;  4OH3 A;  1EKU A;  3BPN A;  4ZF7 A;  4W6V A;  4GC0 A;  2INT A;  1M48 A;  3HMX B;  3WCY I;  4IKW A;  3D85 C;  2Q98 A;  4PS4 A;  3SE4 B;  4ZS7 A;  1F6F A;  3HOZ D;  5E4E A;  1FYH A;  3NCB A;  4XNJ A;  4DKE A;  4A3M D;  4YBQ A;  1HZI A;  5FLM D;  1NBP A;  2O27 A;  1M49 A;  1ITL A;  1PY2 A;  4LRL A;  4JRE A;  4ZWC A;  4DKC A;  1VLK A;  2D9Q A;  2B8X A;  4DOH A;  5C44 D;  1V7M V;  1CYL A;  3HOV D;  4GBZ A;  5KNH I;  2B8U A;  4GRW A;  1GNC A;  3HOX D;  4ZWB A;  1M4B A;  1EXZ A;  4BBR D;  4NKQ C;  3AYH A;  2Q7N B;  5EQI A;  1EVS A;  3BPO A;  1BGE A;  4FA8 E;  1N1F A;  1CNT 1;  2L3Y A;  4YPG C;  3H0G D;  2JA5 D;  4YQX A;  5D22 A;  2Q14 A;  1Y1W D;  2Z3Q A;  2CYK A;  2Z3R A;  4ZYR A;  3BES L;  4A3F D; 
#chains in the Genus database with same CATH homology
 4GBZ A;  4IKX A;  4XNJ A;  4TPJ A;  3O7P A;  4LDS A;  4D2C A;  4JA3 A;  2CFQ A;  4XNI A;  4PYP A;  4D2B A;  5A2O A;  4U4W A;  4U4T A;  2CFP A;  1PV6 A;  5A2N A;  2V8N A;  4OH3 A;  4U4V A;  4IKZ A;  4YBQ A;  5EQG A;  5D59 A;  4OAA A;  4TPG A;  5D6K A;  3WDO A;  3O7Q A;  4ZWB A;  4W6V A;  4D2D A;  4GC0 A;  4JRE A;  4UVM A;  4ZWC A;  4ZW9 A;  4IU9 A;  4APS A;  4LEP A;  5D58 A;  1PW4 A;  4IU8 A;  4IKW A;  4IKY A;  4JR9 A;  5C65 A;  4YB9 D;  2XUT A;  5GXB A;  1PV7 A;  4J05 A;  5EQI A;  4QIQ A;  4Q65 A;  2Y5Y A;  4ZYR A;  4GBY A;  4TPH A;  5EQH A;  4IKV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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