4D6NA

The crystal structure of i-dmoi in complex with its target dna at 10 days incubation in 5mm mg (state 7)
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
183
structure length
183
Chain Sequence
ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords HOMING ENDONUCLEASE I-DMOI
publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
source organism Desulfurococcus mobilis
total genus 59
structure length 183
sequence length 183
chains with identical sequence F, K
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4d6nA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4d6nA02
3OOLA 1U0CA 5A0MA 2QOJZ 1T9JA 4AABA 5E5OA 4Z1ZA 3MXBA 2VS8A 1G9YA 4UNCA 2DCHX 2VBJA 1P8KZ 4Z20A 5A74A 5E5SA 4LOXA 1N3EA 2XE0B 5AKFA 3QQYA 4Z1XA 2VBLB 1T9IA 2EX5A 5A77A 1N3FA 2VBOB 3HYJA 1AF5A 3R7PA 4UN8A 4AADA 1LWTA 2AB5A 4D6NA 5A78A 4LQ0A 3KO2A 3OORA 3EH8A 4AAFA 4UN8G 3MX9A 2CW8A 4UNBA 4YISA 5A0MB 1MOWA 1M5XA 3MXBB 3C0WA 1DFAA 1DQ3A 4AAGA 4D6OA 3E54A 4UN9A 2VBNA 3MIPA 5AK9A 2CW7A 4AQUA 1LWSA 4UN9G 3FD2A 2VS7A 1JVAA 1R7MA 2I3PA 3C0XA 5AKMA 4YHXA 1UM2A 4UN7A 1EF0A 4AQXA 1BP7A 2XE0A 5E67A 5A0WA 5AKNA 3UVFA 2O7MA 2I3QA 1VDEA 2FLDA 4EFJA 4UN7G 2VBJB 2VBLA 1G9ZA 4UT0A 2VBOA 4YITA 4AAEA 1U0DA 5E63A 5A72A 1B24A 3HYIA 4UNAA 3MISA 2VBNB 3MXAA
chains in the Genus database with same CATH superfamily
3OOLA 1U0CA 5A0MA 2QOJZ 1T9JA 4AABA 5E5OA 4Z1ZA 3MXBA 2VS8A 1G9YA 4UNCA 2DCHX 2VBJA 1P8KZ 4Z20A 5A74A 5E5SA 4LOXA 1N3EA 2XE0B 5AKFA 3QQYA 4Z1XA 2VBLB 1T9IA 2EX5A 5A77A 1N3FA 2VBOB 3HYJA 4KZSA 1AF5A 3R7PA 4UN8A 4AADA 1LWTA 2AB5A 4D6NA 5A78A 4LQ0A 3KO2A 3OORA 3EH8A 4AAFA 4UN8G 3MX9A 2CW8A 4UNBA 4YISA 5A0MB 1MOWA 1M5XA 3MXBB 3C0WA 1DFAA 1DQ3A 4AAGA 4D6OA 3E54A 4UN9A 2VBNA 3MIPA 5AK9A 2CW7A 4AQUA 1LWSA 4UN9G 3FD2A 2VS7A 1JVAA 1R7MA 2I3PA 3C0XA 5AKMA 4YHXA 1UM2A 4UN7A 1EF0A 4AQXA 1BP7A 2XE0A 5E67A 5A0WA 5AKNA 3UVFA 2O7MA 2I3QA 1VDEA 2FLDA 4EFJA 4UN7G 2VBJB 2VBLA 1G9ZA 4UT0A 2VBOA 2F4LA 4YITA 4AAEA 1U0DA 5E63A 5A72A 1B24A 3HYIA 4UNAA 3MISA 2VBNB 3MXAA
chains in the Genus database with same CATH topology
3OOLA 1U0CA 5A0MA 2QOJZ 1T9JA 4AABA 5E5OA 4Z1ZA 3MXBA 2VS8A 1G9YA 4UNCA 2DCHX 2VBJA 1P8KZ 4Z20A 5A74A 5E5SA 4LOXA 1N3EA 2XE0B 5AKFA 3QQYA 4Z1XA 2VBLB 1T9IA 2EX5A 5A77A 1N3FA 2VBOB 3HYJA 1AF5A 3R7PA 4UN8A 4AADA 1LWTA 2AB5A 4D6NA 5A78A 4LQ0A 3KO2A 3OORA 3EH8A 4AAFA 4UN8G 3MX9A 2CW8A 4UNBA 4YISA 5A0MB 1MOWA 1M5XA 3MXBB 3C0WA 1DFAA 1DQ3A 4AAGA 4D6OA 3E54A 4UN9A 2VBNA 3MIPA 5AK9A 2CW7A 4AQUA 1LWSA 4UN9G 3FD2A 2VS7A 1JVAA 1R7MA 2I3PA 3C0XA 5AKMA 4YHXA 1UM2A 4UN7A 1EF0A 4AQXA 1BP7A 2XE0A 5E67A 5A0WA 5AKNA 3UVFA 2O7MA 2I3QA 1VDEA 2FLDA 4EFJA 4UN7G 2VBJB 2VBLA 1G9ZA 4UT0A 2VBOA 4YITA 4AAEA 1U0DA 5E63A 5A72A 1B24A 3HYIA 4UNAA 3MISA 2VBNB 3MXAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OOL A;  1U0C A;  5A0M A;  2QOJ Z;  1T9J A;  4AAB A;  5E5O A;  4Z1Z A;  3MXB A;  2VS8 A;  1G9Y A;  4UNC A;  2DCH X;  2VBJ A;  1P8K Z;  4Z20 A;  5A74 A;  5E5S A;  4LOX A;  1N3E A;  2XE0 B;  5AKF A;  3QQY A;  4Z1X A;  2VBL B;  1T9I A;  2EX5 A;  5A77 A;  1N3F A;  2VBO B;  3HYJ A;  1AF5 A;  3R7P A;  4UN8 A;  4AAD A;  1LWT A;  2AB5 A;  4D6N A;  5A78 A;  4LQ0 A;  3KO2 A;  3OOR A;  3EH8 A;  4AAF A;  4UN8 G;  3MX9 A;  2CW8 A;  4UNB A;  4YIS A;  5A0M B;  1MOW A;  1M5X A;  3MXB B;  3C0W A;  1DFA A;  1DQ3 A;  4AAG A;  4D6O A;  3E54 A;  4UN9 A;  2VBN A;  3MIP A;  5AK9 A;  2CW7 A;  4AQU A;  1LWS A;  4UN9 G;  3FD2 A;  2VS7 A;  1JVA A;  1R7M A;  2I3P A;  3C0X A;  5AKM A;  4YHX A;  1UM2 A;  4UN7 A;  1EF0 A;  4AQX A;  1BP7 A;  2XE0 A;  5E67 A;  5A0W A;  5AKN A;  3UVF A;  2O7M A;  2I3Q A;  1VDE A;  2FLD A;  4EFJ A;  4UN7 G;  2VBJ B;  2VBL A;  1G9Z A;  4UT0 A;  2VBO A;  4YIT A;  4AAE A;  1U0D A;  5E63 A;  5A72 A;  1B24 A;  3HYI A;  4UNA A;  3MIS A;  2VBN B;  3MXA A; 
#chains in the Genus database with same CATH topology
 3OOL A;  1U0C A;  5A0M A;  2QOJ Z;  1T9J A;  4AAB A;  5E5O A;  4Z1Z A;  3MXB A;  2VS8 A;  1G9Y A;  4UNC A;  2DCH X;  2VBJ A;  1P8K Z;  4Z20 A;  5A74 A;  5E5S A;  4LOX A;  1N3E A;  2XE0 B;  5AKF A;  3QQY A;  4Z1X A;  2VBL B;  1T9I A;  2EX5 A;  5A77 A;  1N3F A;  2VBO B;  3HYJ A;  4KZS A;  1AF5 A;  3R7P A;  4UN8 A;  4AAD A;  1LWT A;  2AB5 A;  4D6N A;  5A78 A;  4LQ0 A;  3KO2 A;  3OOR A;  3EH8 A;  4AAF A;  4UN8 G;  3MX9 A;  2CW8 A;  4UNB A;  4YIS A;  5A0M B;  1MOW A;  1M5X A;  3MXB B;  3C0W A;  1DFA A;  1DQ3 A;  4AAG A;  4D6O A;  3E54 A;  4UN9 A;  2VBN A;  3MIP A;  5AK9 A;  2CW7 A;  4AQU A;  1LWS A;  4UN9 G;  3FD2 A;  2VS7 A;  1JVA A;  1R7M A;  2I3P A;  3C0X A;  5AKM A;  4YHX A;  1UM2 A;  4UN7 A;  1EF0 A;  4AQX A;  1BP7 A;  2XE0 A;  5E67 A;  5A0W A;  5AKN A;  3UVF A;  2O7M A;  2I3Q A;  1VDE A;  2FLD A;  4EFJ A;  4UN7 G;  2VBJ B;  2VBL A;  1G9Z A;  4UT0 A;  2VBO A;  2F4L A;  4YIT A;  4AAE A;  1U0D A;  5E63 A;  5A72 A;  1B24 A;  3HYI A;  4UNA A;  3MIS A;  2VBN B;  3MXA A; 
#chains in the Genus database with same CATH homology
 3OOL A;  1U0C A;  5A0M A;  2QOJ Z;  1T9J A;  4AAB A;  5E5O A;  4Z1Z A;  3MXB A;  2VS8 A;  1G9Y A;  4UNC A;  2DCH X;  2VBJ A;  1P8K Z;  4Z20 A;  5A74 A;  5E5S A;  4LOX A;  1N3E A;  2XE0 B;  5AKF A;  3QQY A;  4Z1X A;  2VBL B;  1T9I A;  2EX5 A;  5A77 A;  1N3F A;  2VBO B;  3HYJ A;  1AF5 A;  3R7P A;  4UN8 A;  4AAD A;  1LWT A;  2AB5 A;  4D6N A;  5A78 A;  4LQ0 A;  3KO2 A;  3OOR A;  3EH8 A;  4AAF A;  4UN8 G;  3MX9 A;  2CW8 A;  4UNB A;  4YIS A;  5A0M B;  1MOW A;  1M5X A;  3MXB B;  3C0W A;  1DFA A;  1DQ3 A;  4AAG A;  4D6O A;  3E54 A;  4UN9 A;  2VBN A;  3MIP A;  5AK9 A;  2CW7 A;  4AQU A;  1LWS A;  4UN9 G;  3FD2 A;  2VS7 A;  1JVA A;  1R7M A;  2I3P A;  3C0X A;  5AKM A;  4YHX A;  1UM2 A;  4UN7 A;  1EF0 A;  4AQX A;  1BP7 A;  2XE0 A;  5E67 A;  5A0W A;  5AKN A;  3UVF A;  2O7M A;  2I3Q A;  1VDE A;  2FLD A;  4EFJ A;  4UN7 G;  2VBJ B;  2VBL A;  1G9Z A;  4UT0 A;  2VBO A;  4YIT A;  4AAE A;  1U0D A;  5E63 A;  5A72 A;  1B24 A;  3HYI A;  4UNA A;  3MIS A;  2VBN B;  3MXA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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