4DCNC

Crystal structure analysis of the arfaptin2 bar domain in complex with arl1
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
193
structure length
193
Chain Sequence
SRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding/signaling protein
molecule keywords ADP-ribosylation factor-like protein 1
publication title Structural basis for membrane binding specificity of the Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase
pubmed doi rcsb
source organism Homo sapiens
total genus 90
structure length 193
sequence length 193
chains with identical sequence D
ec nomenclature
pdb deposition date 2012-01-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4dcnC00
3QE6A 2X3XA 2Z0VA 4NSWA 2RAJA 2Q12A 3QWEA 3CAZA 3SOGA 3I2WA 2RAIA 2Z0OA 2X3WA 3DYTA 3HAJA 2Z0NA 3ABHA 3OK8A 4I1QA 2EFLA 1ZWWA 2FICA 2X3VA 4WPCA 4DYLA 3LLLA 4AKVA 1I4DA 3ACOA 4DCNC 1X04A 2Q13A 2RAKA 3HAHA 4AVMA 2D4CA 3G9GA 3Q84A 4BNEA 1I4LA 3PLTA 1I4TA 2C08A 2D1LA 3HAIA 3Q0KA 4NQIA 1Y2OA 4H8SA 4ATMA 3QNIA 2EFKA 4WPEA 1URUA 2ELBA 1X03A 1I49A 3M3WA 5C5BB 5C5BA 2V0OA 2YKTA 3SYVA 4FZSA 1WDZA
chains in the Genus database with same CATH superfamily
1R33A 4EZPA 1O7DC 3DYTA 4AZ5A 2QKWA 2FICA 2X3VA 3LVTA 3VEBA 1MJGA 2OBLA 2PY6A 1SU6A 4EZTA 2WYHA 2ELBA 1QWNA 1X03A 1TQWA 4R5LA 2RAJA 4G6QA 4EZWA 4AZ7A 2ND0A 4AZIA 5FIGA 3QNJA 4EZNA 3RV0A 4AVMA 1ZYLA 4BNEA 4AZGA 1E1DA 3I39X 2EFKA 3DX3A 3EJTA 4NPHA 1HXKA 3EJUA 1HTYA 3OWGA 2F7RA 4IWPA 1SU7A 1O7DB 3FD9A 3T4AG 1GNLA 4D8JA 3B51X 1QWUA 4EZYA 2V0OA 2ALWA 4FM3A 2EWFA 2Z0NA 2QFFA 4EZUA 4AKVA 1I4DA 3OHXM 2YLAA 4AZHA 3Q84A 3DPQA 1GNTA 3EJQA 3CZSA 2YIVX 2ZXQA 2YKTA 2N3KA 4R5IA 3T46A 1TQVA 4NSWA 3KDRA 4R5KA 1QX1A 2F7OA 4H6IA 3OK8A 3ER8C 2EFLA 4FZOA 4WPCA 1W9MA 3HAHA 3O3NB 1I4LA 4EZSA 2F7PA 3CV5A 1OA0A 3BUQA 4JNEA 3ERCC 3DDFA 2GF4A 3CAZA 4R5GA 3I2WA 4HYBA 2X3WA 3BVXA 3BUIA 3D2FA 2OW7A 4EZOA 2YIBA 3EJRA 1UPXA 5FLEX 1DKYA 1E2UA 3I01A 4R5JA 4IWOA 3O3OB 2Q12A 2GAFD 3ER9B 2YL9A 2F18A 2YLLA 3ACOA 5KBPA 2YL8A 4AZBA 3LMFA 3T48A 2RT6A 2X3XA 2Z0VA 3DX0A 2OO2A 3DX2A 2YL6A 3D4YA 3ZEDA 3BVWA 4UDXX 1OA1A 4EZQA 3D52A 4JWEA 3BUPA 4JL9A 4JN4A 3DX4A 3CKDA 3GI7A 1LQ7A 2LXYA 4F00A 4HY9A 1ZWWA 2YI9A 2QXLA 2GA9D 3M3WA 4FZSA 4IM3A 3QE6A 1U00A 3QWEA 2JNKA 2F1BA 4JWIA 1DKXA 3HAJA 1JQKA 2FYVA 4E3CA 4H6HA 2Q13A 4KIKA 3G9GA 2D1LA 4JNFA 4NQIA 1Y2OA 3BVUA 2F1AA 4H8SA 1I49A 3SYVA 4HR1A 3L3PA 1DKZA 4M0MA 3C7NA 2OBMA 3L3OM 5E84A 2OW6A 3RV1A 3EJPA 3LLLA 2WINM 3DDGA 4AZCA 5C5BA 2ND1A 1WDZA 4UDYX 4IM2A 2Z0OA 3ABHA 2YL5A 2NCZA 4EZRA 1YWMA 2MI7A 4KIKB 1I4TA 3T47A 3DX1A 3A98A 2EX3B 4E81A 3BVTA 1E9VA 4HR1B 4FZPA 1R5EA 1SU8A 3BVVA 3T49A 3BLBA 2RAIA 3O3MB 4IM0A 3RPMA 3CZNA 2OZNB 4DYLA 4DCNC 3PLTA 3Q0KA 2O0I1 3I04A 4ATMA 4AZCB 4EZZA 2KHOA 2YI8A 5C5BB 1GN9A 3F7WA 5TKYA 4JLCA 2JNSA 3KAVA 2LM0A 3CVRA 1TQUA 1X04A 2RAKA 4PO2A 2D4CA 3UITA 3EJSA 4AZ6A 3VKHA 4JWCA 1TQSA 2X5CA 2PMRA 3DPPA 3SOGA 4IW0A 4JWDA 4I1QA 4IWQA 3D50A 2YIAA 1HWWA 3D51A 3BUDA 4EZXA 1TQTA 3QA8A 1PS3A 2C08A 3QNIA 4WPEA 3VEAA 3D4ZA 1SUFA 3D2EA 4F01A 2WYIA 3B53X 4B9QA 3BUBA 3B52X 1R34A 2Z8YA 4EZVA 3HAIA 3KAWA 1URUA 2F7QA 3DPOA 1OAOA
chains in the Genus database with same CATH topology
3QE6A 2X3XA 2Z0VA 4NSWA 2RAJA 2Q12A 3QWEA 3CAZA 3SOGA 3I2WA 2RAIA 2Z0OA 2X3WA 3DYTA 3HAJA 2Z0NA 3ABHA 3OK8A 4I1QA 2EFLA 1ZWWA 2FICA 2X3VA 4WPCA 4DYLA 3LLLA 4AKVA 1I4DA 3ACOA 4DCNC 1X04A 2Q13A 2RAKA 3HAHA 4AVMA 2D4CA 3G9GA 3Q84A 4BNEA 1I4LA 3PLTA 1I4TA 2C08A 2D1LA 3HAIA 3Q0KA 4NQIA 1Y2OA 4H8SA 4ATMA 3QNIA 2EFKA 4WPEA 1URUA 2ELBA 1X03A 1I49A 3M3WA 5C5BB 5C5BA 2V0OA 2YKTA 3SYVA 4FZSA 1WDZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QE6 A;  2X3X A;  2Z0V A;  4NSW A;  2RAJ A;  2Q12 A;  3QWE A;  3CAZ A;  3SOG A;  3I2W A;  2RAI A;  2Z0O A;  2X3W A;  3DYT A;  3HAJ A;  2Z0N A;  3ABH A;  3OK8 A;  4I1Q A;  2EFL A;  1ZWW A;  2FIC A;  2X3V A;  4WPC A;  4DYL A;  3LLL A;  4AKV A;  1I4D A;  3ACO A;  4DCN C;  1X04 A;  2Q13 A;  2RAK A;  3HAH A;  4AVM A;  2D4C A;  3G9G A;  3Q84 A;  4BNE A;  1I4L A;  3PLT A;  1I4T A;  2C08 A;  2D1L A;  3HAI A;  3Q0K A;  4NQI A;  1Y2O A;  4H8S A;  4ATM A;  3QNI A;  2EFK A;  4WPE A;  1URU A;  2ELB A;  1X03 A;  1I49 A;  3M3W A;  5C5B B;  5C5B A;  2V0O A;  2YKT A;  3SYV A;  4FZS A;  1WDZ A; 
#chains in the Genus database with same CATH topology
 1R33 A;  4EZP A;  1O7D C;  3DYT A;  4AZ5 A;  2QKW A;  2FIC A;  2X3V A;  3LVT A;  3VEB A;  1MJG A;  2OBL A;  2PY6 A;  1SU6 A;  4EZT A;  2WYH A;  2ELB A;  1QWN A;  1X03 A;  1TQW A;  4R5L A;  2RAJ A;  4G6Q A;  4EZW A;  4AZ7 A;  2ND0 A;  4AZI A;  5FIG A;  3QNJ A;  4EZN A;  3RV0 A;  4AVM A;  1ZYL A;  4BNE A;  4AZG A;  1E1D A;  3I39 X;  2EFK A;  3DX3 A;  3EJT A;  4NPH A;  1HXK A;  3EJU A;  1HTY A;  3OWG A;  2F7R A;  4IWP A;  1SU7 A;  1O7D B;  3FD9 A;  3T4A G;  1GNL A;  4D8J A;  3B51 X;  1QWU A;  4EZY A;  2V0O A;  2ALW A;  4FM3 A;  2EWF A;  2Z0N A;  2QFF A;  4EZU A;  4AKV A;  1I4D A;  3OHX M;  2YLA A;  4AZH A;  3Q84 A;  3DPQ A;  1GNT A;  3EJQ A;  3CZS A;  2YIV X;  2ZXQ A;  2YKT A;  2N3K A;  4R5I A;  3T46 A;  1TQV A;  4NSW A;  3KDR A;  4R5K A;  1QX1 A;  2F7O A;  4H6I A;  3OK8 A;  3ER8 C;  2EFL A;  4FZO A;  4WPC A;  1W9M A;  3HAH A;  3O3N B;  1I4L A;  4EZS A;  2F7P A;  3CV5 A;  1OA0 A;  3BUQ A;  4JNE A;  3ERC C;  3DDF A;  2GF4 A;  3CAZ A;  4R5G A;  3I2W A;  4HYB A;  2X3W A;  3BVX A;  3BUI A;  3D2F A;  2OW7 A;  4EZO A;  2YIB A;  3EJR A;  1UPX A;  5FLE X;  1DKY A;  1E2U A;  3I01 A;  4R5J A;  4IWO A;  3O3O B;  2Q12 A;  2GAF D;  3ER9 B;  2YL9 A;  2F18 A;  2YLL A;  3ACO A;  5KBP A;  2YL8 A;  4AZB A;  3LMF A;  3T48 A;  2RT6 A;  2X3X A;  2Z0V A;  3DX0 A;  2OO2 A;  3DX2 A;  2YL6 A;  3D4Y A;  3ZED A;  3BVW A;  4UDX X;  1OA1 A;  4EZQ A;  3D52 A;  4JWE A;  3BUP A;  4JL9 A;  4JN4 A;  3DX4 A;  3CKD A;  3GI7 A;  1LQ7 A;  2LXY A;  4F00 A;  4HY9 A;  1ZWW A;  2YI9 A;  2QXL A;  2GA9 D;  3M3W A;  4FZS A;  4IM3 A;  3QE6 A;  1U00 A;  3QWE A;  2JNK A;  2F1B A;  4JWI A;  1DKX A;  3HAJ A;  1JQK A;  2FYV A;  4E3C A;  4H6H A;  2Q13 A;  4KIK A;  3G9G A;  2D1L A;  4JNF A;  4NQI A;  1Y2O A;  3BVU A;  2F1A A;  4H8S A;  1I49 A;  3SYV A;  4HR1 A;  3L3P A;  1DKZ A;  4M0M A;  3C7N A;  2OBM A;  3L3O M;  5E84 A;  2OW6 A;  3RV1 A;  3EJP A;  3LLL A;  2WIN M;  3DDG A;  4AZC A;  5C5B A;  2ND1 A;  1WDZ A;  4UDY X;  4IM2 A;  2Z0O A;  3ABH A;  2YL5 A;  2NCZ A;  4EZR A;  1YWM A;  2MI7 A;  4KIK B;  1I4T A;  3T47 A;  3DX1 A;  3A98 A;  2EX3 B;  4E81 A;  3BVT A;  1E9V A;  4HR1 B;  4FZP A;  1R5E A;  1SU8 A;  3BVV A;  3T49 A;  3BLB A;  2RAI A;  3O3M B;  4IM0 A;  3RPM A;  3CZN A;  2OZN B;  4DYL A;  4DCN C;  3PLT A;  3Q0K A;  2O0I 1;  3I04 A;  4ATM A;  4AZC B;  4EZZ A;  2KHO A;  2YI8 A;  5C5B B;  1GN9 A;  3F7W A;  5TKY A;  4JLC A;  2JNS A;  3KAV A;  2LM0 A;  3CVR A;  1TQU A;  1X04 A;  2RAK A;  4PO2 A;  2D4C A;  3UIT A;  3EJS A;  4AZ6 A;  3VKH A;  4JWC A;  1TQS A;  2X5C A;  2PMR A;  3DPP A;  3SOG A;  4IW0 A;  4JWD A;  4I1Q A;  4IWQ A;  3D50 A;  2YIA A;  1HWW A;  3D51 A;  3BUD A;  4EZX A;  1TQT A;  3QA8 A;  1PS3 A;  2C08 A;  3QNI A;  4WPE A;  3VEA A;  3D4Z A;  1SUF A;  3D2E A;  4F01 A;  2WYI A;  3B53 X;  4B9Q A;  3BUB A;  3B52 X;  1R34 A;  2Z8Y A;  4EZV A;  3HAI A;  3KAW A;  1URU A;  2F7Q A;  3DPO A;  1OAO A; 
#chains in the Genus database with same CATH homology
 3QE6 A;  2X3X A;  2Z0V A;  4NSW A;  2RAJ A;  2Q12 A;  3QWE A;  3CAZ A;  3SOG A;  3I2W A;  2RAI A;  2Z0O A;  2X3W A;  3DYT A;  3HAJ A;  2Z0N A;  3ABH A;  3OK8 A;  4I1Q A;  2EFL A;  1ZWW A;  2FIC A;  2X3V A;  4WPC A;  4DYL A;  3LLL A;  4AKV A;  1I4D A;  3ACO A;  4DCN C;  1X04 A;  2Q13 A;  2RAK A;  3HAH A;  4AVM A;  2D4C A;  3G9G A;  3Q84 A;  4BNE A;  1I4L A;  3PLT A;  1I4T A;  2C08 A;  2D1L A;  3HAI A;  3Q0K A;  4NQI A;  1Y2O A;  4H8S A;  4ATM A;  3QNI A;  2EFK A;  4WPE A;  1URU A;  2ELB A;  1X03 A;  1I49 A;  3M3W A;  5C5B B;  5C5B A;  2V0O A;  2YKT A;  3SYV A;  4FZS A;  1WDZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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