4DCZA

Crystal structure of a domain from a mycoplasma genitalium terminal organelle protein
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
55
structure length
55
Chain Sequence
QNKDPDELRSKVPGEVTASDWEALVGDTRYGYFDETGDWSWKGYFDEQGKWVWNE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Unknown function
molecule keywords DnaJ-like protein MG200
publication title The EAGR box structure: a motif involved in mycoplasma motility.
pubmed doi rcsb
source organism Mycoplasma genitalium
total genus 9
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16713 EAGR_box Enriched in aromatic and glycine Residues box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.50 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 4dczA00
4DCZA
chains in the Genus database with same CATH superfamily
3EZFA 5D90A 1Q0AA 3QAOA 5D8CA 3HH0A 4R4EA 3D70A 4LHFA 1EXJA 2ZHGA 4DCZA 1Q06A 4WLSA 3Q5PA 3Q5RA 2JMLA 1Y6UA 3D71A 1EXIA 3Q1MA 1R8DA 1Q05A 1Q09A 2VZ4A 1Q07A 3EZ7A 5I41B 4J2NA 5E01A 1RH6A 3IAOA 3D6YA 3GP4A 5I44A 3D6ZA 2OG0A 2ZHHA 3EZ2A 3GPVA 1LX8A 2KVVA 3Q3DA 1JBGA 3Q5SA 3Q2YA 1R8EA 4R22B 2IEFA 2DG6A 4WLWA 4R24B 3EZ6A 3EZ9A 1Q08A 3UCSA 1PM6A
chains in the Genus database with same CATH topology
3EZFA 5D90A 1Q0AA 3QAOA 5D8CA 3HH0A 4R4EA 3D70A 4LHFA 1EXJA 2ZHGA 4DCZA 1Q06A 4WLSA 3Q5PA 3Q5RA 2JMLA 1Y6UA 3D71A 1EXIA 3Q1MA 1R8DA 1Q05A 1Q09A 2VZ4A 1Q07A 3EZ7A 5I41B 4J2NA 5E01A 1RH6A 3IAOA 3D6YA 3GP4A 5I44A 3D6ZA 2OG0A 2ZHHA 3EZ2A 3GPVA 1LX8A 2KVVA 3Q3DA 1JBGA 3Q5SA 3Q2YA 1R8EA 4R22B 2IEFA 2DG6A 4WLWA 4R24B 3EZ6A 3EZ9A 1Q08A 3UCSA 1PM6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DCZ A; 
#chains in the Genus database with same CATH topology
 3EZF A;  5D90 A;  1Q0A A;  3QAO A;  5D8C A;  3HH0 A;  4R4E A;  3D70 A;  4LHF A;  1EXJ A;  2ZHG A;  4DCZ A;  1Q06 A;  4WLS A;  3Q5P A;  3Q5R A;  2JML A;  1Y6U A;  3D71 A;  1EXI A;  3Q1M A;  1R8D A;  1Q05 A;  1Q09 A;  2VZ4 A;  1Q07 A;  3EZ7 A;  5I41 B;  4J2N A;  5E01 A;  1RH6 A;  3IAO A;  3D6Y A;  3GP4 A;  5I44 A;  3D6Z A;  2OG0 A;  2ZHH A;  3EZ2 A;  3GPV A;  1LX8 A;  2KVV A;  3Q3D A;  1JBG A;  3Q5S A;  3Q2Y A;  1R8E A;  4R22 B;  2IEF A;  2DG6 A;  4WLW A;  4R24 B;  3EZ6 A;  3EZ9 A;  1Q08 A;  3UCS A;  1PM6 A; 
#chains in the Genus database with same CATH homology
 3EZF A;  5D90 A;  1Q0A A;  3QAO A;  5D8C A;  3HH0 A;  4R4E A;  3D70 A;  4LHF A;  1EXJ A;  2ZHG A;  4DCZ A;  1Q06 A;  4WLS A;  3Q5P A;  3Q5R A;  2JML A;  1Y6U A;  3D71 A;  1EXI A;  3Q1M A;  1R8D A;  1Q05 A;  1Q09 A;  2VZ4 A;  1Q07 A;  3EZ7 A;  5I41 B;  4J2N A;  5E01 A;  1RH6 A;  3IAO A;  3D6Y A;  3GP4 A;  5I44 A;  3D6Z A;  2OG0 A;  2ZHH A;  3EZ2 A;  3GPV A;  1LX8 A;  2KVV A;  3Q3D A;  1JBG A;  3Q5S A;  3Q2Y A;  1R8E A;  4R22 B;  2IEF A;  2DG6 A;  4WLW A;  4R24 B;  3EZ6 A;  3EZ9 A;  1Q08 A;  3UCS A;  1PM6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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