4DDPA

Crystal structure of beclin 1 evolutionarily conserved domain(ecd)
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
200
structure length
195
Chain Sequence
KSVENQMRYAQTQLDKLVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGTRFCLPYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords Beclin-1
publication title Crystal structure and biochemical analyses reveal Beclin 1 as a novel membrane binding protein
pubmed doi rcsb
source organism Homo sapiens
total genus 61
structure length 195
sequence length 200
ec nomenclature
pdb deposition date 2012-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04111 APG6 Apg6 BARA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.40 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 4ddpA00
3VP7A 4DDPA
chains in the Genus database with same CATH superfamily
2HL9A 2R0OA 2VZCA 3KY9A 2DK9A 3JARM 2EQOA 2K2RA 1WYOA 4B7LA 3KMWB 2D88A 1WYLA 1P5SA 1DXXA 3I6XA 3F7PA 1UEGA 2YRNA 4EDLA 2WE6A 1WYPA 2QJXA 1TJTA 3CO1A 2E9KA 1WYNA 1EUVA 5A36A 2HL8A 5FMTA 3HOCA 1SH6A 1AOAA 3EAYA 2D85A 4Q59A 3HOPA 2JV9A 1BKRA 2EYNA 1WKUA 2VE7A 2WFNA 3JAKM 1SH5A 1VKAA 3VP7A 2VZGB 2IGPA 3JALM 2WDTA 3HORA 1WJOA 3KMUB 1AA2A 5L0OA 1QAGA 5FMUA 5A38A 4TXIA 1V5KA 5BVRA 2QJZA 1UJOA 1MB8A 1RT8A 1WYQA 4EDMA 3FERA 4DDPA 5J8EA 2VZDA 2HKPA 2L3GA 4LVPA 1WIXA 1WYRA 2D86A 2WA6A 4LVRA 1P2XA 2VE7C 2D89A 2EYIA 4EDNA 3REPB 2VZIB 4Q58A 1PXYA 2EE7A 2WA7A 4TXKA 2WA5A 5A4BA 2K3SA 4Q57B 2R8UA 5A37A 1H67A 2D87A 1WYMA 1PA7A 1BHDA 2RR8A
chains in the Genus database with same CATH topology
2EQOA 5FMTA 2WDTA 3EAYA 4LVPA 2HL9A 2VE7A 4LVRA 1EUVA 2VE7C 3VP7A 2IGPA 5FMUA 2WE6A 2HL8A 2HKPA 4DDPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VP7 A;  4DDP A; 
#chains in the Genus database with same CATH topology
 2HL9 A;  2R0O A;  2VZC A;  3KY9 A;  2DK9 A;  3JAR M;  2EQO A;  2K2R A;  1WYO A;  4B7L A;  3KMW B;  2D88 A;  1WYL A;  1P5S A;  1DXX A;  3I6X A;  3F7P A;  1UEG A;  2YRN A;  4EDL A;  2WE6 A;  1WYP A;  2QJX A;  1TJT A;  3CO1 A;  2E9K A;  1WYN A;  1EUV A;  5A36 A;  2HL8 A;  5FMT A;  3HOC A;  1SH6 A;  1AOA A;  3EAY A;  2D85 A;  4Q59 A;  3HOP A;  2JV9 A;  1BKR A;  2EYN A;  1WKU A;  2VE7 A;  2WFN A;  3JAK M;  1SH5 A;  1VKA A;  3VP7 A;  2VZG B;  2IGP A;  3JAL M;  2WDT A;  3HOR A;  1WJO A;  3KMU B;  1AA2 A;  5L0O A;  1QAG A;  5FMU A;  5A38 A;  4TXI A;  1V5K A;  5BVR A;  2QJZ A;  1UJO A;  1MB8 A;  1RT8 A;  1WYQ A;  4EDM A;  3FER A;  4DDP A;  5J8E A;  2VZD A;  2HKP A;  2L3G A;  4LVP A;  1WIX A;  1WYR A;  2D86 A;  2WA6 A;  4LVR A;  1P2X A;  2VE7 C;  2D89 A;  2EYI A;  4EDN A;  3REP B;  2VZI B;  4Q58 A;  1PXY A;  2EE7 A;  2WA7 A;  4TXK A;  2WA5 A;  5A4B A;  2K3S A;  4Q57 B;  2R8U A;  5A37 A;  1H67 A;  2D87 A;  1WYM A;  1PA7 A;  1BHD A;  2RR8 A; 
#chains in the Genus database with same CATH homology
 2EQO A;  5FMT A;  2WDT A;  3EAY A;  4LVP A;  2HL9 A;  2VE7 A;  4LVR A;  1EUV A;  2VE7 C;  3VP7 A;  2IGP A;  5FMU A;  2WE6 A;  2HL8 A;  2HKP A;  4DDP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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