4DFCB

Core uvra/trcf complex
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
123
structure length
121
Chain Sequence
MASTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna binding protein
molecule keywords Transcription-repair-coupling factor
publication title Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.
pubmed doi rcsb
source organism Escherichia coli
total genus 26
structure length 121
sequence length 123
chains with identical sequence D
ec nomenclature ec 3.6.1.3: Adenosinetriphosphatase.
pdb deposition date 2012-01-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.20 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase 4dfcB00
4QGBA 1I2AA 4F9TA 4LQ4A 1CJSA 5DM60 3U4MA 1MZPA 5DM70 1DWUA 3ZQJA 1U63A 4QVIA 3U56A 2HW8A 3TG8A 1ZHOA 4REOA 3UMYA 3QOYA 4QG3A 3FPNA 1AD2A 4DFCB
chains in the Genus database with same CATH superfamily
2V67I 1AUSS 1WDDS 2DFXI 2V68I 4QGBA 4RUBS 1I2AA 1RBOC 2VDHI 1IR21 3AXKS 3RUBS 4F9TA 2V69I 1RBLI 4LQ4A 1AA1C 1UW9C 2V6AI 2V63I 1BWVS 1CJSA 5DM60 8RUCI 1RLDS 1RXOC 3ZXWB 1RCOC 3U4MA 5DM70 1MZPA 1IR1S 4F0MB 1IWAB 1DWUA 3ZQJA 1UPPI 2YBVB 1U63A 4F0KB 4QVIA 3U56A 2HW8A 2FHZA 1RLCS 3TG8A 2VDII 1ZHOA 1UZDC 1RCXC 1UZHC 4REOA 3UMYA 1SVDM 4HHHS 4DFCB 4F0HB 1UPMC 1UWAC 3QOYA 4MKVS 1EJ7S 3AXMS 1BXNI 4QG3A 3FPNA 1AD2A 1GK8I 1RSCI
chains in the Genus database with same CATH topology
4QGBA 2DFXI 1I2AA 4F9TA 4LQ4A 1CJSA 5DM60 3U4MA 1MZPA 5DM70 1DWUA 3ZQJA 1U63A 4QVIA 3U56A 2HW8A 2FHZA 3TG8A 1ZHOA 4REOA 3UMYA 3QOYA 4QG3A 3FPNA 1AD2A 4DFCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QGB A;  1I2A A;  4F9T A;  4LQ4 A;  1CJS A;  5DM6 0;  3U4M A;  1MZP A;  5DM7 0;  1DWU A;  3ZQJ A;  1U63 A;  4QVI A;  3U56 A;  2HW8 A;  3TG8 A;  1ZHO A;  4REO A;  3UMY A;  3QOY A;  4QG3 A;  3FPN A;  1AD2 A;  4DFC B; 
#chains in the Genus database with same CATH topology
 2V67 I;  1AUS S;  1WDD S;  2DFX I;  2V68 I;  4QGB A;  4RUB S;  1I2A A;  1RBO C;  2VDH I;  1IR2 1;  3AXK S;  3RUB S;  4F9T A;  2V69 I;  1RBL I;  4LQ4 A;  1AA1 C;  1UW9 C;  2V6A I;  2V63 I;  1BWV S;  1CJS A;  5DM6 0;  8RUC I;  1RLD S;  1RXO C;  3ZXW B;  1RCO C;  3U4M A;  5DM7 0;  1MZP A;  1IR1 S;  4F0M B;  1IWA B;  1DWU A;  3ZQJ A;  1UPP I;  2YBV B;  1U63 A;  4F0K B;  4QVI A;  3U56 A;  2HW8 A;  2FHZ A;  1RLC S;  3TG8 A;  2VDI I;  1ZHO A;  1UZD C;  1RCX C;  1UZH C;  4REO A;  3UMY A;  1SVD M;  4HHH S;  4DFC B;  4F0H B;  1UPM C;  1UWA C;  3QOY A;  4MKV S;  1EJ7 S;  3AXM S;  1BXN I;  4QG3 A;  3FPN A;  1AD2 A;  1GK8 I;  1RSC I; 
#chains in the Genus database with same CATH homology
 4QGB A;  2DFX I;  1I2A A;  4F9T A;  4LQ4 A;  1CJS A;  5DM6 0;  3U4M A;  1MZP A;  5DM7 0;  1DWU A;  3ZQJ A;  1U63 A;  4QVI A;  3U56 A;  2HW8 A;  2FHZ A;  3TG8 A;  1ZHO A;  4REO A;  3UMY A;  3QOY A;  4QG3 A;  3FPN A;  1AD2 A;  4DFC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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