The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
44
|
sequence length |
316
|
structure length |
276
|
Chain Sequence |
TEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAVQEIGVQNDFQTEVKSGLTEGEKVVIS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Assembly and channel opening of outer membrane protein in tripartite drug efflux pumps of Gram-negative bacteria.
pubmed doi rcsb |
molecule keywords |
Putative MacA, Multidrug resistance protein mexA
|
molecule tags |
Membrane protein
|
source organism |
Aggregatibacter actinomycetemcomitans
|
total genus |
44
|
structure length |
276
|
sequence length |
316
|
chains with identical sequence |
B, C, D
|
ec nomenclature | |
pdb deposition date | 2012-02-03 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF16576 | HlyD_D23 | Barrel-sandwich domain of CusB or HlyD membrane-fusion |
A | PF16576 | HlyD_D23 | Barrel-sandwich domain of CusB or HlyD membrane-fusion |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | ||
Mainly Beta | Single Sheet | N-terminal domain of TfIIb | N-terminal domain of TfIIb | ||
Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | Elongation Factor Tu (Ef-tu); domain 3 | ||
Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | OB fold (Dihydrolipoamide Acetyltransferase, E2P) |