4DKDA

Crystal structure of human interleukin-34 bound to human csf-1r
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
161
structure length
161
Chain Sequence
NEECTVTGFLRDKLQYRSRLQYMKHYFPINYKISVPYEGVFRIANVTRLQRAQVSERELRYLWVLVSLSATESVQDVLLEGHPSWKYLQEVETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNCFRVMELLYCSCCKQSSVLNWQDCE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytokine/transferase
molecule keywords Interleukin-34
publication title Structural Basis for the Dual Recognition of Helical Cytokines IL-34 and CSF-1 by CSF-1R.
pubmed doi rcsb
source organism Homo sapiens
total genus 55
structure length 161
sequence length 161
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15036 IL34 Interleukin 34
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.80 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 4dkdA00
4EXNA 4EXPA 4DKEA 4DKCA 4DKFA 4DKDA
chains in the Genus database with same CATH superfamily
5LQBA 4XNIA 4RS1A 4IKYA 1A7MA 5FUCA 3I4ND 1AXIA 4NEMA 3NCFA 1IARA 1M4AA 4BY1D 4IKXA 1Y1WD 1I1RB 3L5XA 2O27A 3DI3A 2ILKA 3HOYD 3WDOA 1EERA 1WCMD 4LDSA 5GXBA 4NKQC 2LMSA 3VA2A 1RCBA 4J4LC 2ERJD 5C3ED 1V7NV 4GBYA 2R92D 4OH3A 2Z3QA 4DKCA 1CN4C 3WCYI 4FA8E 3HOWD 4EXPA 1PY2A 2C35A 4XNJA 1Y14A 3G9VB 4JA3A 3DI2A 3D87A 1KF9A 4YQXA 4CNIC 2VUMD 4GBZA 4PYPA 4ZWBA 4OAAA 4TPHA 5FHXA 4A3ID 3BESL 1ITMA 3HOVD 4D2BA 1BP3A 3INKC 1Z7CA 3EJJA 4NN5A 4YBQA 1CYLA 4D2DA 2B90A 1J7VL 3G6DA 1JLIA 2O26A 5EQIA 3HOZD 4JR9A 2INTA 1M47A 3HMXB 1BUYA 4ZF7A 3NCCA 3QT2C 4BXXD 1EVSA 4BY7D 3AYHA 5IP9D 1HWHA 3H3VE 3QB7A 1IK0A 3MZGA 3QB1A 3OG6A 1EXZA 1EMRA 1HUWA 4A3GD 4IU8A 4W6VA 1PW4A 1RFBA 1M4RA 2IL6A 4GC0A 1RW5A 1B5LA 3QWRB 4O6KA 4ZS7A 3H0GD 1HGUA 2B63D 3PIVA 4A3JD 2JA8D 4MHLA 1D9GA 1F6FA 1HWGA 4ZWCA 3D85C 1AX8A 1IL6A 5E4EA 4BBSD 3NPZA 4U4VA 3HOUD 5D22A 1CSGA 1ITFA 3NCEA 1YKBA 1PGRA 4NEJA 1Y6KL 3OG4A 3HOXD 1M4BA 1GNCA 4IKVA 5D28B 4DOHA 1SCFA 1INRA 3TGXB 5C65A 3O7QA 1Y6NL 1Y6ML 2CYKA 1GA3A 1PV6A 4IKZA 2B8XA 4APSA 4PS4A 1QVNA 1AU1A 2Q14A 4D2CA 4NI7A 4NI9A 2JA7D 3O7PA 5IYDD 3DGCL 1ITLA 1N1FA 2Q7NB 1BGDA 1WU3I 3HHCA 3IRHA 5D70A 5L6YC 5KNHI 4A93D 1LQSL 4UVMA 4ZYRA 1CNT1 1LK3A 4GRWA 1M4CA 4YUEC 3PIWA 3I4MD 5D72A 1BBNA 4YB9D 5IP7D 4ZW9A 3SE3B 5C44D 4O9HA 1PW6A 2PSMA 1HIJA 1ITIA 1IRLA 1ALUA 5D71A 2LAGA 1FG9A 4A3CD 3N06A 4LRLA 1ETEA 3N0PA 1F45B 4YPGC 1A22A 1EKUA 2B8YA 4A3DD 1BCNA 4IKWA 1PVHB 4A3FD 3BPNA 3LB6A 1V7MV 4NN7A 4TPJA 1NBPA 3UF5A 3BPLA 4YDYI 4A3LD 1HIKA 4DKEA 4A3BD 1HULA 5IYCD 3LB6B 3UEZE 3EW3A 2V8NA 3DLQI 4NN6A 3PO2D 4Q65A 3QAZA 1CD9A 5EQHA 2Z3RA 5FLMD 1BGEA 2XQBA 3B5KA 3BPOA 1Z92A 4QIQA 2B8ZA 4JREA 4DKFA 1RHGA 1HZIA 2GMFA 3DUHC 4I77Z 4LEPA 2JA6D 4A3ED 3HHRA 2D48A 1FYHA 4J05A 2Y5YA 4IU9A 1IJZA 4BBRD 2Q98A 4WRLB 5D59A 5EQGA 1M48A 2KZ1A 2JA5D 2XUTA 1LKIA 3SE4B 4A3MD 2B5IA 3D48P 3S9DA 5D58A 5TS9A 4U4TA 2CFQA 2L3YA 4TPGA 1P9MB 3NCBA 5C7XA 2D9QA 3Q1SI 5D6KA 3UX9A 2B8UA 2E9WC 2OQPA 4DKDA 3PO3D 5C4XD 2L3OA 1Y1VD 4U4WA 1M49A 1VLKA 2O6IA 2CFPA 2H24A 1D9CA 1PV7A 4GS7A 4X51A 5A2OA 2R7ZD 3UF2A 3FKID 2HYMB 3L5WI 1ILKA 4A3KD 4EXNA 5IYBD 3OQ3A 2R93D 1BGCA 4Z5RD 5A2NA 2B91A
chains in the Genus database with same CATH topology
1ITLA 1M47A 3HMXB 5LQBA 5FLMD 1BGEA 1N1FA 1BUYA 4ZF7A 2XQBA 3NCCA 3QT2C 2Q7NB 4BXXD 4RS1A 3B5KA 1BGDA 3BPOA 1WU3I 3HHCA 3IRHA 1EVSA 1A7MA 5D70A 4BY7D 1Z92A 2B8ZA 5L6YC 5KNHI 4DKFA 3AYHA 1RHGA 5FUCA 3I4ND 4A93D 1HZIA 1GA3A 1AXIA 2GMFA 1LQSL 4NEMA 3NCFA 5IP9D 1HWHA 1IARA 3H3VE 1CNT1 1LK3A 1M4AA 3DUHC 3QB7A 4GRWA 4I77Z 4BY1D 2JA6D 1Y1WD 1M4CA 4YUEC 4A3ED 1IK0A 3PIWA 3I4MD 3MZGA 5D72A 1BBNA 1I1RB 3HHRA 3QB1A 3L5XA 3OG6A 2O27A 3DI3A 1EXZA 5IP7D 2ILKA 2D48A 3HOYD 1EMRA 1FYHA 1EERA 1WCMD 1HUWA 4A3GD 3SE3B 5C44D 4NKQC 4O9HA 1IJZA 1PW6A 2LMSA 2Q98A 4BBRD 2PSMA 3VA2A 1HIJA 1RFBA 1RCBA 1ITIA 1M4RA 4WRLB 1IRLA 1ALUA 5D71A 2IL6A 4J4LC 2ERJD 2LAGA 5C3ED 1FG9A 1M48A 1RW5A 2KZ1A 3DGCL 1V7NV 2JA5D 4BBSD 1B5LA 4A3CD 3N06A 2R92D 1LKIA 4LRLA 3SE4B 2Z3QA 4A3MD 2B5IA 3QWRB 4DKCA 3D48P 1ETEA 3S9DA 1CN4C 3N0PA 4O6KA 3H0GD 3WCYI 4FA8E 4ZS7A 1HGUA 1F45B 3HOWD 4EXPA 2B63D 4YPGC 5TS9A 1A22A 1EKUA 2B8YA 3PIVA 4A3JD 2JA8D 2L3YA 4A3DD 1PY2A 1BCNA 4MHLA 1D9GA 1F6FA 1HWGA 1P9MB 3NCBA 5C7XA 2C35A 2D9QA 1Y14A 3D85C 3G9VB 1AX8A 3DI2A 3Q1SI 1IL6A 1PVHB 4A3FD 3D87A 5E4EA 3BPNA 3LB6A 1KF9A 4YQXA 1V7MV 3UX9A 4CNIC 2B8UA 2E9WC 2OQPA 3NPZA 4DKDA 3PO3D 3HOUD 5C4XD 5D22A 2VUMD 4NN7A 1CSGA 1ITFA 2L3OA 1YKBA 3NCEA 1Y1VD 1NBPA 1PGRA 3UF5A 5FHXA 1M49A 3BPLA 4A3ID 4NEJA 3BESL 4YDYI 1ITMA 1Y6KL 3OG4A 3HOXD 3HOVD 1VLKA 1M4BA 3HOZD 1HIKA 2O6IA 4A3LD 4DKEA 2H24A 4A3BD 1D9CA 1GNCA 1HULA 4GS7A 4X51A 5IYCD 5D28B 2R7ZD 3LB6B 3UEZE 3EW3A 1SCFA 1INRA 3FKID 3TGXB 3UF2A 2HYMB 4DOHA 3L5WI 3DLQI 1BP3A 4NN6A 3INKC 1ILKA 4A3KD 1Z7CA 3EJJA 1Y6NL 1Y6ML 2CYKA 4NN5A 3PO2D 4EXNA 1CYLA 3QAZA 5IYBD 3OQ3A 2B8XA 2R93D 4PS4A 1QVNA 1BGCA 1AU1A 2B90A 2Q14A 4NI7A 1J7VL 4NI9A 2JA7D 3G6DA 1JLIA 4Z5RD 1CD9A 2B91A 2O26A 5IYDD 2Z3RA 2INTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EXN A;  4EXP A;  4DKE A;  4DKC A;  4DKF A;  4DKD A; 
#chains in the Genus database with same CATH topology
 5LQB A;  4XNI A;  4RS1 A;  4IKY A;  1A7M A;  5FUC A;  3I4N D;  1AXI A;  4NEM A;  3NCF A;  1IAR A;  1M4A A;  4BY1 D;  4IKX A;  1Y1W D;  1I1R B;  3L5X A;  2O27 A;  3DI3 A;  2ILK A;  3HOY D;  3WDO A;  1EER A;  1WCM D;  4LDS A;  5GXB A;  4NKQ C;  2LMS A;  3VA2 A;  1RCB A;  4J4L C;  2ERJ D;  5C3E D;  1V7N V;  4GBY A;  2R92 D;  4OH3 A;  2Z3Q A;  4DKC A;  1CN4 C;  3WCY I;  4FA8 E;  3HOW D;  4EXP A;  1PY2 A;  2C35 A;  4XNJ A;  1Y14 A;  3G9V B;  4JA3 A;  3DI2 A;  3D87 A;  1KF9 A;  4YQX A;  4CNI C;  2VUM D;  4GBZ A;  4PYP A;  4ZWB A;  4OAA A;  4TPH A;  5FHX A;  4A3I D;  3BES L;  1ITM A;  3HOV D;  4D2B A;  1BP3 A;  3INK C;  1Z7C A;  3EJJ A;  4NN5 A;  4YBQ A;  1CYL A;  4D2D A;  2B90 A;  1J7V L;  3G6D A;  1JLI A;  2O26 A;  5EQI A;  3HOZ D;  4JR9 A;  2INT A;  1M47 A;  3HMX B;  1BUY A;  4ZF7 A;  3NCC A;  3QT2 C;  4BXX D;  1EVS A;  4BY7 D;  3AYH A;  5IP9 D;  1HWH A;  3H3V E;  3QB7 A;  1IK0 A;  3MZG A;  3QB1 A;  3OG6 A;  1EXZ A;  1EMR A;  1HUW A;  4A3G D;  4IU8 A;  4W6V A;  1PW4 A;  1RFB A;  1M4R A;  2IL6 A;  4GC0 A;  1RW5 A;  1B5L A;  3QWR B;  4O6K A;  4ZS7 A;  3H0G D;  1HGU A;  2B63 D;  3PIV A;  4A3J D;  2JA8 D;  4MHL A;  1D9G A;  1F6F A;  1HWG A;  4ZWC A;  3D85 C;  1AX8 A;  1IL6 A;  5E4E A;  4BBS D;  3NPZ A;  4U4V A;  3HOU D;  5D22 A;  1CSG A;  1ITF A;  3NCE A;  1YKB A;  1PGR A;  4NEJ A;  1Y6K L;  3OG4 A;  3HOX D;  1M4B A;  1GNC A;  4IKV A;  5D28 B;  4DOH A;  1SCF A;  1INR A;  3TGX B;  5C65 A;  3O7Q A;  1Y6N L;  1Y6M L;  2CYK A;  1GA3 A;  1PV6 A;  4IKZ A;  2B8X A;  4APS A;  4PS4 A;  1QVN A;  1AU1 A;  2Q14 A;  4D2C A;  4NI7 A;  4NI9 A;  2JA7 D;  3O7P A;  5IYD D;  3DGC L;  1ITL A;  1N1F A;  2Q7N B;  1BGD A;  1WU3 I;  3HHC A;  3IRH A;  5D70 A;  5L6Y C;  5KNH I;  4A93 D;  1LQS L;  4UVM A;  4ZYR A;  1CNT 1;  1LK3 A;  4GRW A;  1M4C A;  4YUE C;  3PIW A;  3I4M D;  5D72 A;  1BBN A;  4YB9 D;  5IP7 D;  4ZW9 A;  3SE3 B;  5C44 D;  4O9H A;  1PW6 A;  2PSM A;  1HIJ A;  1ITI A;  1IRL A;  1ALU A;  5D71 A;  2LAG A;  1FG9 A;  4A3C D;  3N06 A;  4LRL A;  1ETE A;  3N0P A;  1F45 B;  4YPG C;  1A22 A;  1EKU A;  2B8Y A;  4A3D D;  1BCN A;  4IKW A;  1PVH B;  4A3F D;  3BPN A;  3LB6 A;  1V7M V;  4NN7 A;  4TPJ A;  1NBP A;  3UF5 A;  3BPL A;  4YDY I;  4A3L D;  1HIK A;  4DKE A;  4A3B D;  1HUL A;  5IYC D;  3LB6 B;  3UEZ E;  3EW3 A;  2V8N A;  3DLQ I;  4NN6 A;  3PO2 D;  4Q65 A;  3QAZ A;  1CD9 A;  5EQH A;  2Z3R A;  5FLM D;  1BGE A;  2XQB A;  3B5K A;  3BPO A;  1Z92 A;  4QIQ A;  2B8Z A;  4JRE A;  4DKF A;  1RHG A;  1HZI A;  2GMF A;  3DUH C;  4I77 Z;  4LEP A;  2JA6 D;  4A3E D;  3HHR A;  2D48 A;  1FYH A;  4J05 A;  2Y5Y A;  4IU9 A;  1IJZ A;  4BBR D;  2Q98 A;  4WRL B;  5D59 A;  5EQG A;  1M48 A;  2KZ1 A;  2JA5 D;  2XUT A;  1LKI A;  3SE4 B;  4A3M D;  2B5I A;  3D48 P;  3S9D A;  5D58 A;  5TS9 A;  4U4T A;  2CFQ A;  2L3Y A;  4TPG A;  1P9M B;  3NCB A;  5C7X A;  2D9Q A;  3Q1S I;  5D6K A;  3UX9 A;  2B8U A;  2E9W C;  2OQP A;  4DKD A;  3PO3 D;  5C4X D;  2L3O A;  1Y1V D;  4U4W A;  1M49 A;  1VLK A;  2O6I A;  2CFP A;  2H24 A;  1D9C A;  1PV7 A;  4GS7 A;  4X51 A;  5A2O A;  2R7Z D;  3UF2 A;  3FKI D;  2HYM B;  3L5W I;  1ILK A;  4A3K D;  4EXN A;  5IYB D;  3OQ3 A;  2R93 D;  1BGC A;  4Z5R D;  5A2N A;  2B91 A; 
#chains in the Genus database with same CATH homology
 1ITL A;  1M47 A;  3HMX B;  5LQB A;  5FLM D;  1BGE A;  1N1F A;  1BUY A;  4ZF7 A;  2XQB A;  3NCC A;  3QT2 C;  2Q7N B;  4BXX D;  4RS1 A;  3B5K A;  1BGD A;  3BPO A;  1WU3 I;  3HHC A;  3IRH A;  1EVS A;  1A7M A;  5D70 A;  4BY7 D;  1Z92 A;  2B8Z A;  5L6Y C;  5KNH I;  4DKF A;  3AYH A;  1RHG A;  5FUC A;  3I4N D;  4A93 D;  1HZI A;  1GA3 A;  1AXI A;  2GMF A;  1LQS L;  4NEM A;  3NCF A;  5IP9 D;  1HWH A;  1IAR A;  3H3V E;  1CNT 1;  1LK3 A;  1M4A A;  3DUH C;  3QB7 A;  4GRW A;  4I77 Z;  4BY1 D;  2JA6 D;  1Y1W D;  1M4C A;  4YUE C;  4A3E D;  1IK0 A;  3PIW A;  3I4M D;  3MZG A;  5D72 A;  1BBN A;  1I1R B;  3HHR A;  3QB1 A;  3L5X A;  3OG6 A;  2O27 A;  3DI3 A;  1EXZ A;  5IP7 D;  2ILK A;  2D48 A;  3HOY D;  1EMR A;  1FYH A;  1EER A;  1WCM D;  1HUW A;  4A3G D;  3SE3 B;  5C44 D;  4NKQ C;  4O9H A;  1IJZ A;  1PW6 A;  2LMS A;  2Q98 A;  4BBR D;  2PSM A;  3VA2 A;  1HIJ A;  1RFB A;  1RCB A;  1ITI A;  1M4R A;  4WRL B;  1IRL A;  1ALU A;  5D71 A;  2IL6 A;  4J4L C;  2ERJ D;  2LAG A;  5C3E D;  1FG9 A;  1M48 A;  1RW5 A;  2KZ1 A;  3DGC L;  1V7N V;  2JA5 D;  4BBS D;  1B5L A;  4A3C D;  3N06 A;  2R92 D;  1LKI A;  4LRL A;  3SE4 B;  2Z3Q A;  4A3M D;  2B5I A;  3QWR B;  4DKC A;  3D48 P;  1ETE A;  3S9D A;  1CN4 C;  3N0P A;  4O6K A;  3H0G D;  3WCY I;  4FA8 E;  4ZS7 A;  1HGU A;  1F45 B;  3HOW D;  4EXP A;  2B63 D;  4YPG C;  5TS9 A;  1A22 A;  1EKU A;  2B8Y A;  3PIV A;  4A3J D;  2JA8 D;  2L3Y A;  4A3D D;  1PY2 A;  1BCN A;  4MHL A;  1D9G A;  1F6F A;  1HWG A;  1P9M B;  3NCB A;  5C7X A;  2C35 A;  2D9Q A;  1Y14 A;  3D85 C;  3G9V B;  1AX8 A;  3DI2 A;  3Q1S I;  1IL6 A;  1PVH B;  4A3F D;  3D87 A;  5E4E A;  3BPN A;  3LB6 A;  1KF9 A;  4YQX A;  1V7M V;  3UX9 A;  4CNI C;  2B8U A;  2E9W C;  2OQP A;  3NPZ A;  4DKD A;  3PO3 D;  3HOU D;  5C4X D;  5D22 A;  2VUM D;  4NN7 A;  1CSG A;  1ITF A;  2L3O A;  1YKB A;  3NCE A;  1Y1V D;  1NBP A;  1PGR A;  3UF5 A;  5FHX A;  1M49 A;  3BPL A;  4A3I D;  4NEJ A;  3BES L;  4YDY I;  1ITM A;  1Y6K L;  3OG4 A;  3HOX D;  3HOV D;  1VLK A;  1M4B A;  3HOZ D;  1HIK A;  2O6I A;  4A3L D;  4DKE A;  2H24 A;  4A3B D;  1D9C A;  1GNC A;  1HUL A;  4GS7 A;  4X51 A;  5IYC D;  5D28 B;  2R7Z D;  3LB6 B;  3UEZ E;  3EW3 A;  1SCF A;  1INR A;  3FKI D;  3TGX B;  3UF2 A;  2HYM B;  4DOH A;  3L5W I;  3DLQ I;  1BP3 A;  4NN6 A;  3INK C;  1ILK A;  4A3K D;  1Z7C A;  3EJJ A;  1Y6N L;  1Y6M L;  2CYK A;  4NN5 A;  3PO2 D;  4EXN A;  1CYL A;  3QAZ A;  5IYB D;  3OQ3 A;  2B8X A;  2R93 D;  4PS4 A;  1QVN A;  1BGC A;  1AU1 A;  2B90 A;  2Q14 A;  4NI7 A;  1J7V L;  4NI9 A;  2JA7 D;  3G6D A;  1JLI A;  4Z5R D;  1CD9 A;  2B91 A;  2O26 A;  5IYD D;  2Z3R A;  2INT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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