4DKSA

A spindle-shaped virus protein (chymotrypsin treated)
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
161
structure length
145
Chain Sequence
ADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSGVFYVFHITPLKRVEVTKWAIADFERRHAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPVSLFGIAKEQYKKYAEWLKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Recombination
molecule keywords Probable integrase
publication title Structural and functional characterization of the C-terminal catalytic domain of SSV1 integrase
doi rcsb
source organism Sulfolobus virus 1
total genus 46
structure length 145
sequence length 161
ec nomenclature
pdb deposition date 2012-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16795 Phage_integr_3 Archaeal phage integrase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 4dksA00
3VCFA 3UXUA 1Z19A 1F44A 1Q3VA 1MA7A 1Q3UA 1NZBA 1XNSA 1P4EA 3MGVA 4A8EA 1XO0A 1M6XC 3C29A 2CRXA 3C28A 3CRXA 5C6KA 1P7DA 1PVQA 1KBUA 1FLOA 1DRGA 2HOIA 1OUQA 1CRXA 2A3VA 1PVRA 1P4EC 5DORA 2HOFA 5DCFA 1AIHA 1M6XA 4DKSA 5CRXA 1A0PA 3NKHA 1Z1BA 1AE9A 1PVPA 4CRXA
chains in the Genus database with same CATH superfamily
3VCFA 3UXUA 1Z19A 1F44A 1Q3VA 4E0PA 4ACOA 1MA7A 1Q3UA 4DWPA 2V6EA 1NZBA 4E0JA 1XNSA 1P4EA 4F41A 3MGVA 4A8EA 1XO0A 1M6XC 3C29A 2CRXA 3C28A 3CRXA 5C6KA 1P7DA 1PVQA 4F43A 1KBUA 1FLOA 1DRGA 4E10A 4E0YA 2HOIA 1OUQA 1CRXA 4E0GA 2A3VA 1PVRA 1P4EC 5DORA 2HOFA 5DCFA 4E0ZA 1AIHA 1M6XA 4DKSA 5CRXA 1A0PA 3NKHA 3SQIA 1Z1BA 3T79A 1AE9A 1PVPA 4CRXA
chains in the Genus database with same CATH topology
3VCFA 3UXUA 1Z19A 1F44A 1Q3VA 1MA7A 1Q3UA 1NZBA 1XNSA 1P4EA 3MGVA 4A8EA 1XO0A 1M6XC 3C29A 2CRXA 3C28A 3CRXA 5C6KA 1P7DA 1PVQA 1KBUA 1FLOA 1DRGA 2HOIA 1OUQA 1CRXA 2A3VA 1PVRA 1P4EC 5DORA 2HOFA 5DCFA 1AIHA 1M6XA 4DKSA 5CRXA 1A0PA 3NKHA 1Z1BA 1AE9A 1PVPA 4CRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VCF A;  3UXU A;  1Z19 A;  1F44 A;  1Q3V A;  1MA7 A;  1Q3U A;  1NZB A;  1XNS A;  1P4E A;  3MGV A;  4A8E A;  1XO0 A;  1M6X C;  3C29 A;  2CRX A;  3C28 A;  3CRX A;  5C6K A;  1P7D A;  1PVQ A;  1KBU A;  1FLO A;  1DRG A;  2HOI A;  1OUQ A;  1CRX A;  2A3V A;  1PVR A;  1P4E C;  5DOR A;  2HOF A;  5DCF A;  1AIH A;  1M6X A;  4DKS A;  5CRX A;  1A0P A;  3NKH A;  1Z1B A;  1AE9 A;  1PVP A;  4CRX A; 
#chains in the Genus database with same CATH topology
 3VCF A;  3UXU A;  1Z19 A;  1F44 A;  1Q3V A;  4E0P A;  4ACO A;  1MA7 A;  1Q3U A;  4DWP A;  2V6E A;  1NZB A;  4E0J A;  1XNS A;  1P4E A;  4F41 A;  3MGV A;  4A8E A;  1XO0 A;  1M6X C;  3C29 A;  2CRX A;  3C28 A;  3CRX A;  5C6K A;  1P7D A;  1PVQ A;  4F43 A;  1KBU A;  1FLO A;  1DRG A;  4E10 A;  4E0Y A;  2HOI A;  1OUQ A;  1CRX A;  4E0G A;  2A3V A;  1PVR A;  1P4E C;  5DOR A;  2HOF A;  5DCF A;  4E0Z A;  1AIH A;  1M6X A;  4DKS A;  5CRX A;  1A0P A;  3NKH A;  3SQI A;  1Z1B A;  3T79 A;  1AE9 A;  1PVP A;  4CRX A; 
#chains in the Genus database with same CATH homology
 3VCF A;  3UXU A;  1Z19 A;  1F44 A;  1Q3V A;  1MA7 A;  1Q3U A;  1NZB A;  1XNS A;  1P4E A;  3MGV A;  4A8E A;  1XO0 A;  1M6X C;  3C29 A;  2CRX A;  3C28 A;  3CRX A;  5C6K A;  1P7D A;  1PVQ A;  1KBU A;  1FLO A;  1DRG A;  2HOI A;  1OUQ A;  1CRX A;  2A3V A;  1PVR A;  1P4E C;  5DOR A;  2HOF A;  5DCF A;  1AIH A;  1M6X A;  4DKS A;  5CRX A;  1A0P A;  3NKH A;  1Z1B A;  1AE9 A;  1PVP A;  4CRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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