4DKSA

A spindle-shaped virus protein (chymotrypsin treated)
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
161
structure length
145
Chain Sequence
ADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSGVFYVFHITPLKRVEVTKWAIADFERRHAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPVSLFGIAKEQYKKYAEWLKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural and functional characterization of the C-terminal catalytic domain of SSV1 integrase
doi rcsb
molecule tags Recombination
source organism Sulfolobus virus 1
molecule keywords Probable integrase
total genus 46
structure length 145
sequence length 161
ec nomenclature
pdb deposition date 2012-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16795 Phage_integr_3 Archaeal phage integrase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 4dksA00
1DRGA 1M6XA 1Q3UA 1Z1BA 5DORA 3C28A 2A3VA 1XO0A 1KBUA 5CRXA 1AIHA 1PVPA 2HOIA 1FLOA 1NZBA 1Q3VA 1P7DA 3MGVA 1AE9A 1A0PA 1F44A 4A8EA 1Z19A 5C6KA 2CRXA 3UXUA 3NKHA 1CRXA 4CRXA 3C29A 1XNSA 1P4EC 1P4EA 3CRXA 1PVQA 4DKSA 1OUQA 3VCFA 1MA7A 2HOFA 5DCFA 1PVRA 1M6XC
chains in the Genus database with same CATH superfamily
4E0PA 1DRGA 4E0ZA 3T79A 1Q3UA 1M6XA 3SQIA 1Z1BA 5DORA 3C28A 4E10A 2A3VA 1XO0A 4F43A 1KBUA 5CRXA 1AIHA 1PVPA 2HOIA 1FLOA 1NZBA 4ACOA 1Q3VA 1P7DA 3MGVA 4E0GA 1AE9A 1A0PA 1F44A 4A8EA 1Z19A 5C6KA 2CRXA 3UXUA 3NKHA 1CRXA 4CRXA 3C29A 2V6EA 1XNSA 1P4EC 1P4EA 4DWPA 4E0JA 3CRXA 1PVQA 4DKSA 1OUQA 3VCFA 4F41A 4E0YA 1MA7A 2HOFA 5DCFA 1PVRA 1M6XC
chains in the Genus database with same CATH topology
1DRGA 1M6XA 1Q3UA 1Z1BA 5DORA 3C28A 2A3VA 1XO0A 1KBUA 5CRXA 1AIHA 1PVPA 2HOIA 1FLOA 1NZBA 1Q3VA 1P7DA 3MGVA 1AE9A 1A0PA 1F44A 4A8EA 1Z19A 5C6KA 2CRXA 3UXUA 3NKHA 1CRXA 4CRXA 3C29A 1XNSA 1P4EC 1P4EA 3CRXA 1PVQA 4DKSA 1OUQA 3VCFA 1MA7A 2HOFA 5DCFA 1PVRA 1M6XC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DRG A;  1M6X A;  1Q3U A;  1Z1B A;  5DOR A;  3C28 A;  2A3V A;  1XO0 A;  1KBU A;  5CRX A;  1AIH A;  1PVP A;  2HOI A;  1FLO A;  1NZB A;  1Q3V A;  1P7D A;  3MGV A;  1AE9 A;  1A0P A;  1F44 A;  4A8E A;  1Z19 A;  5C6K A;  2CRX A;  3UXU A;  3NKH A;  1CRX A;  4CRX A;  3C29 A;  1XNS A;  1P4E C;  1P4E A;  3CRX A;  1PVQ A;  4DKS A;  1OUQ A;  3VCF A;  1MA7 A;  2HOF A;  5DCF A;  1PVR A;  1M6X C; 
#chains in the Genus database with same CATH topology
 4E0P A;  1DRG A;  4E0Z A;  3T79 A;  1Q3U A;  1M6X A;  3SQI A;  1Z1B A;  5DOR A;  3C28 A;  4E10 A;  2A3V A;  1XO0 A;  4F43 A;  1KBU A;  5CRX A;  1AIH A;  1PVP A;  2HOI A;  1FLO A;  1NZB A;  4ACO A;  1Q3V A;  1P7D A;  3MGV A;  4E0G A;  1AE9 A;  1A0P A;  1F44 A;  4A8E A;  1Z19 A;  5C6K A;  2CRX A;  3UXU A;  3NKH A;  1CRX A;  4CRX A;  3C29 A;  2V6E A;  1XNS A;  1P4E C;  1P4E A;  4DWP A;  4E0J A;  3CRX A;  1PVQ A;  4DKS A;  1OUQ A;  3VCF A;  4F41 A;  4E0Y A;  1MA7 A;  2HOF A;  5DCF A;  1PVR A;  1M6X C; 
#chains in the Genus database with same CATH homology
 1DRG A;  1M6X A;  1Q3U A;  1Z1B A;  5DOR A;  3C28 A;  2A3V A;  1XO0 A;  1KBU A;  5CRX A;  1AIH A;  1PVP A;  2HOI A;  1FLO A;  1NZB A;  1Q3V A;  1P7D A;  3MGV A;  1AE9 A;  1A0P A;  1F44 A;  4A8E A;  1Z19 A;  5C6K A;  2CRX A;  3UXU A;  3NKH A;  1CRX A;  4CRX A;  3C29 A;  1XNS A;  1P4E C;  1P4E A;  3CRX A;  1PVQ A;  4DKS A;  1OUQ A;  3VCF A;  1MA7 A;  2HOF A;  5DCF A;  1PVR A;  1M6X C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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