4DM0A

Tn5 transposase: 20mer outside end 2 mn complex
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
475
structure length
460
Chain Sequence
TSALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPVESQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Transposase for transposon Tn5
publication title Two-metal active site binding of a TN5 transposase synaptic complex
pubmed rcsb
source organism Escherichia coli
total genus 154
structure length 460
sequence length 475
ec nomenclature ec 3.1.-.-:
pdb deposition date 2012-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 4dm0A01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 4dm0A03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 4dm0A02
4DM0A 1MM8A 3ECPA 1B7EA 1MUHA 1MUSA
chains in the Genus database with same CATH superfamily
4WA6B 2BXLA 4LB9A 4N0UD 4N0FD 3VQIA 2BX8A 3G9KD 4TQ0A 2OZBB 4IW1A 2LXSA 1HA2A 1NT2B 2DYMA 3BPJA 1BKEA 1HK3A 2EFEA 4G03A 4GDXA 4LA0A 5GINA 2Z8JA 5IIUA 2BXCA 1MM8A 3NMUA 5IIXA 4F5SA 5GIOA 2BXNA 4ZC6A 3NVIA 5FUOA 2Z8IA 3V08A 3LU8A 3A73A 3UIVA 1B7EA 1LNSA 3A75A 4EMXA 4OR0A 3FWBC 2BXGA 2E0XA 2YDFA 2XVQA 2AJEA 4FJCB 4ZUXV 1MUHA 2BXDA 3ECPA 2EFHA 3NVKA 2BXEA 4HGKA 2BXMA 2DBWA 1BJ5A 1HK1A 4GDKB 4L9QA 3SIUB 4HGMB 1UORA 2XVUA 3H3AA 3GQXA 4FK5B 3KIKA 2LXTA 2EFCA 4Z9OA 3V09A 2NNWA 4GG2A 5BPKA 4BKEA 3JRYA 1GNIA 2BXPA 3GQUA 1HK2A 1MUSA 4L9KA 3MHHB 1E7IA 2KBZA 1H9ZA 1TXUA 1VZSA 2BXKA 2XW0A 3MHSB 1KXPD 4D7XA 2QHBA 3FWCC 1E7CA 4LUFA 1J7EA 4IW2A 4W4UB 2KWFA 1GNJA 4GDLB 1TF0A 4BY9C 2QMCA 4K71A 2BXQA 4TQ1A 1AO6A 1JNBA 2LOQA 1E7AA 4JK4A 3B9LA 3LU7A 1E7HA 5B5TA 4S1YA 2LQHA 2VUFA 1FOUA 4K2CA 4F5TA 1MIVA 3ICXA 2ROHA 4PO0A 5GIPA 2I30A 1KW2A 2BXIA 2CKXA 2OT3A 5DQFA 2XVVA 2BXOA 2V36A 3GA9L 4MBEC 3V03A 4E99A 4F5UA 2XSIA 5ID7A 2DBXA 4G01A 3CX9A 2BXBA 3W1SA 4NAWB 2K0NA 3WHQA 1E78A 1E7GA 3SQJA 1VFIA 2DG5A 2NQOA 4C31B 5GHKA 2VDBA 3FNMA 2XMOA 3LU6A 2EFDA 4I9OA 4J2VA 4F5VA 4DM0A 4L8UA 4G04A 4ZCGA 1HK5A 2JUHA 2XW1A 3KJLA 1IJGA 3M99C 4OT2A 5DBYA 2E0YA 2DYOA 1MIWA 2I2ZA 2Z8KA 4M70B 2BXHA 3WHSA 1H5WA 5IIHA 3H37A 4N3ZA 5D7GA 5IJFA 2DBUA 5ID9A 2XVWA 5IJ5A 1E7FA 1E7BA 5IFOA 1MIYA 4FIPB 3TDLA 1E7EA 5IJEA 2LQIA 1N5UA 3NVMA 3B9MA 1HK4A 1J78A 2BXFA 4ZBRA 1SB0A 2BXAA 3PLAA 2AGHB 1BM0A 4ZBQA 4LUHA 2VUEA 1MA9A 2QM6A 4Z69A 3WHRA 1KDXA 4ZBKA 3JQZA 3SIVB 2GUTA 4LB2A 1LOTA 4OTTA 4OTUA 5HOZA 1O9XA 4DHXB
chains in the Genus database with same CATH topology
4DM0A 1MM8A 3ECPA 1B7EA 1MUHA 1MUSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DM0 A;  1MM8 A;  3ECP A;  1B7E A;  1MUH A;  1MUS A; 
#chains in the Genus database with same CATH topology
 4WA6 B;  2BXL A;  4LB9 A;  4N0U D;  4N0F D;  3VQI A;  2BX8 A;  3G9K D;  4TQ0 A;  2OZB B;  4IW1 A;  2LXS A;  1HA2 A;  1NT2 B;  2DYM A;  3BPJ A;  1BKE A;  1HK3 A;  2EFE A;  4G03 A;  4GDX A;  4LA0 A;  5GIN A;  2Z8J A;  5IIU A;  2BXC A;  1MM8 A;  3NMU A;  5IIX A;  4F5S A;  5GIO A;  2BXN A;  4ZC6 A;  3NVI A;  5FUO A;  2Z8I A;  3V08 A;  3LU8 A;  3A73 A;  3UIV A;  1B7E A;  1LNS A;  3A75 A;  4EMX A;  4OR0 A;  3FWB C;  2BXG A;  2E0X A;  2YDF A;  2XVQ A;  2AJE A;  4FJC B;  4ZUX V;  1MUH A;  2BXD A;  3ECP A;  2EFH A;  3NVK A;  2BXE A;  4HGK A;  2BXM A;  2DBW A;  1BJ5 A;  1HK1 A;  4GDK B;  4L9Q A;  3SIU B;  4HGM B;  1UOR A;  2XVU A;  3H3A A;  3GQX A;  4FK5 B;  3KIK A;  2LXT A;  2EFC A;  4Z9O A;  3V09 A;  2NNW A;  4GG2 A;  5BPK A;  4BKE A;  3JRY A;  1GNI A;  2BXP A;  3GQU A;  1HK2 A;  1MUS A;  4L9K A;  3MHH B;  1E7I A;  2KBZ A;  1H9Z A;  1TXU A;  1VZS A;  2BXK A;  2XW0 A;  3MHS B;  1KXP D;  4D7X A;  2QHB A;  3FWC C;  1E7C A;  4LUF A;  1J7E A;  4IW2 A;  4W4U B;  2KWF A;  1GNJ A;  4GDL B;  1TF0 A;  4BY9 C;  2QMC A;  4K71 A;  2BXQ A;  4TQ1 A;  1AO6 A;  1JNB A;  2LOQ A;  1E7A A;  4JK4 A;  3B9L A;  3LU7 A;  1E7H A;  5B5T A;  4S1Y A;  2LQH A;  2VUF A;  1FOU A;  4K2C A;  4F5T A;  1MIV A;  3ICX A;  2ROH A;  4PO0 A;  5GIP A;  2I30 A;  1KW2 A;  2BXI A;  2CKX A;  2OT3 A;  5DQF A;  2XVV A;  2BXO A;  2V36 A;  3GA9 L;  4MBE C;  3V03 A;  4E99 A;  4F5U A;  2XSI A;  5ID7 A;  2DBX A;  4G01 A;  3CX9 A;  2BXB A;  3W1S A;  4NAW B;  2K0N A;  3WHQ A;  1E78 A;  1E7G A;  3SQJ A;  1VFI A;  2DG5 A;  2NQO A;  4C31 B;  5GHK A;  2VDB A;  3FNM A;  2XMO A;  3LU6 A;  2EFD A;  4I9O A;  4J2V A;  4F5V A;  4DM0 A;  4L8U A;  4G04 A;  4ZCG A;  1HK5 A;  2JUH A;  2XW1 A;  3KJL A;  1IJG A;  3M99 C;  4OT2 A;  5DBY A;  2E0Y A;  2DYO A;  1MIW A;  2I2Z A;  2Z8K A;  4M70 B;  2BXH A;  3WHS A;  1H5W A;  5IIH A;  3H37 A;  4N3Z A;  5D7G A;  5IJF A;  2DBU A;  5ID9 A;  2XVW A;  5IJ5 A;  1E7F A;  1E7B A;  5IFO A;  1MIY A;  4FIP B;  3TDL A;  1E7E A;  5IJE A;  2LQI A;  1N5U A;  3NVM A;  3B9M A;  1HK4 A;  1J78 A;  2BXF A;  4ZBR A;  1SB0 A;  2BXA A;  3PLA A;  2AGH B;  1BM0 A;  4ZBQ A;  4LUH A;  2VUE A;  1MA9 A;  2QM6 A;  4Z69 A;  3WHR A;  1KDX A;  4ZBK A;  3JQZ A;  3SIV B;  2GUT A;  4LB2 A;  1LOT A;  4OTT A;  4OTU A;  5HOZ A;  1O9X A;  4DHX B; 
#chains in the Genus database with same CATH homology
 4DM0 A;  1MM8 A;  3ECP A;  1B7E A;  1MUH A;  1MUS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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