4DNSA

Crystal structure of bermuda grass isoallergen bg60 provides insight into the various cross-allergenicity of the pollen group 4 allergens
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
486
structure length
486
Chain Sequence
DFLTCLTKDIPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDLVTKWQTVAPALPDDLMIRIMAMGQGAMFEALYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESVPYIPMGPKGTVRDLLNRTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKGKIDPEDYFRNEQSIPPLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD-linked oxidoreductase BG60
publication title Various cross-reactivity of the grass pollen group 4 allergens: crystallographic study of the Bermuda grass isoallergen Cyn d 4.
pubmed doi rcsb
total genus 154
structure length 486
sequence length 486
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4dnsA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4dnsA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4dnsA03
1JROA 3TSJA 2GQTA 2Y08A 1I19A 2BVGA 1QLUA 3S1CA 1W1RA 3D2JA 1E8HA 1W1LA 3AN1A 3FW7A 3EUB3 3KJMA 3HSUA 3S1FA 4PWBA 3AMZA 1ZR6A 2W54A 3D2HA 2VFRA 5I1VA 2VFVA 4BBYA 1E8FA 3NS1B 3TSHA 2Y3SA 2Y4GA 2W55A 2MBRA 3FWAA 2I0KA 4BC7A 2Y3RA 3NRZB 2Q4WA 4JAYA 4XLOA 1W1JA 1UXYA 1WYGA 2EXRA 5HHZA 1AHVA 5AE2A 3AM9A 1FIQB 3RJAA 5AWVA 2VFSA 3W8XA 2WDWA 1N5WC 5I1WA 5L6GA 5ADZA 3TX1A 3FW8A 3DQ0A 4PVHA 3W8ZA 4BCAA 1AHUA 1VAOA 3ETRB 4ML8A 1N5XA 3C0PA 1AHZA 2QPMA 4O95A 2BVFA 4ZOHB 1W1QA 1VDVA 1N60C 5AE1A 1E0YA 1F0XA 1FFVC 1QLTA 3POPA 5HQXA 1ZXIC 4OALA 3PM9A 1N63C 4PVJA 5L6FA 1N62C 1MBTA 3D2DA 4PVKA 1FFUC 1MBBA 1WVFA 1T3QC 5D79A 4UD8A 3FW9A 5K8EA 3PQBA 5FXEA 3JS8A 2VFTA 1N61C 4JB1A 2VFUA 5FXFA 5HMRA 3GSYA 1FO4A 1W1OA 3B9JB 3S1DA 5FXPA 5FXDA 1DZNA 3NVZB 4DNSA 1DIIA 3BW7A 3I99A 4PVEA 4MLAA 2VAOA 2E3TA 3W8WA 1W1MA 4EC3A 1E8GA 1DIQA 1W1SA 4PYTA 4PWCA 3S1EA 3VTEA 2Q85A 2GQUA 4PZFA 2W3RA 1W1KA 2QKNA 3SR6B 2W3SA 1HSKA 4BC9A 5AE3A 2AXRA 1V97A 1WVEA 3RJ8A 2IPIA 2BVHA
chains in the Genus database with same CATH superfamily
1JROA 3TSJA 2GQTA 2Y08A 1I19A 2BVGA 1QLUA 3S1CA 2RK5A 5G5GB 1W1RA 3D2JA 1E8HA 1W1LA 3AN1A 3HRDC 3FW7A 3EUB3 3KJMA 3HSUA 3S1FA 4PWBA 3AMZA 1ZR6A 2W54A 3D2HA 2OAIA 3DEDA 2VFRA 5I1VA 2VFVA 4BBYA 1E8FA 3NS1B 3TSHA 3LAEA 2Y3SA 2R8DA 2Y4GA 2W55A 2MBRA 3FWAA 2I0KA 1RM6B 4BC7A 2Y3RA 3NRZB 1JRPA 2Q4WA 4JAYA 4XLOA 1W1JA 1UXYA 1WYGA 2EXRA 5HHZA 1AHVA 5AE2A 3AM9A 1FIQB 2P3HA 3RJAA 5AWVA 2VFSA 2PLIA 3W8XA 2UUVA 2WDWA 1N5WC 2O3GA 5I1WA 5L6GA 5ADZA 3TX1A 3NVWB 3FW8A 3DQ0A 4PVHA 3W8ZA 4BCAA 1AHUA 1VAOA 3EJEB 3ETRB 4HG0A 4ML8A 1N5XA 3C0PA 1AHZA 2QPMA 4O95A 2BVFA 4ZOHB 1W1QA 1VDVA 1N60C 5AE1A 1E0YA 1F0XA 1FFVC 1QLTA 3LLBA 3POPA 5HQXA 1ZXIC 4OALA 3PM9A 1N63C 4PVJA 2R2ZA 5L6FA 1N62C 1MBTA 3NVYB 2PLSA 3D2DA 4PVKA 2UUUA 1FFUC 1MBBA 1WVFA 3EJDB 1T3QC 5D79A 4UD8A 3FW9A 5K8EA 3PQBA 5FXEA 3JS8A 3NVVB 2VFTA 1N61C 4JB1A 2VFUA 5FXFA 5HMRA 3GSYA 1FO4A 1W1OA 3B9JB 3S1DA 5G5HB 5FXPA 2P4PA 2YVSA 5FXDA 1SB3B 1DZNA 3EJBB 3NVZB 4DNSA 1DIIA 3BW7A 3I99A 4PVEA 4MLAA 2VAOA 2E3TA 3W8WA 1W1MA 4EC3A 1E8GA 1DIQA 1W1SA 4PYTA 4PWCA 3S1EA 3VTEA 2Q85A 2P13A 2GQUA 4PZFA 2W3RA 1W1KA 2QKNA 3SR6B 2W3SA 1HSKA 4BC9A 5AE3A 2NQWA 2AXRA 1V97A 1WVEA 3RJ8A 2IPIA 2BVHA
chains in the Genus database with same CATH topology
1JROA 3TSJA 2GQTA 2Y08A 1I19A 2BVGA 1QLUA 3S1CA 2RK5A 5G5GB 1W1RA 3D2JA 1E8HA 1W1LA 3AN1A 3HRDC 3FW7A 3EUB3 3KJMA 3HSUA 3S1FA 4PWBA 3AMZA 1ZR6A 2W54A 3D2HA 2OAIA 3DEDA 2VFRA 5I1VA 2VFVA 4BBYA 1E8FA 3NS1B 3TSHA 3LAEA 2Y3SA 2R8DA 2Y4GA 2W55A 2MBRA 3FWAA 2I0KA 1RM6B 4BC7A 2Y3RA 3NRZB 1JRPA 2Q4WA 4JAYA 4XLOA 1W1JA 1UXYA 1WYGA 2EXRA 5HHZA 1AHVA 5AE2A 3AM9A 1FIQB 2P3HA 3RJAA 5AWVA 2VFSA 2PLIA 3W8XA 2UUVA 2WDWA 1N5WC 2O3GA 5I1WA 5L6GA 5ADZA 3TX1A 3NVWB 3FW8A 3DQ0A 4PVHA 3W8ZA 4BCAA 1AHUA 1VAOA 3ETRB 4HG0A 4ML8A 1N5XA 3C0PA 1AHZA 2QPMA 4O95A 2BVFA 4ZOHB 1W1QA 1VDVA 1N60C 5AE1A 1E0YA 1F0XA 1FFVC 1QLTA 3LLBA 3POPA 5HQXA 1ZXIC 4OALA 3PM9A 1N63C 4PVJA 2R2ZA 5L6FA 1N62C 1MBTA 3NVYB 2PLSA 3D2DA 4PVKA 2UUUA 1FFUC 1MBBA 1WVFA 1T3QC 5D79A 4UD8A 3FW9A 5K8EA 3PQBA 5FXEA 3JS8A 3NVVB 2VFTA 1N61C 4JB1A 2VFUA 5FXFA 5HMRA 3GSYA 1FO4A 1W1OA 3B9JB 3S1DA 5G5HB 5FXPA 2P4PA 2YVSA 5FXDA 1SB3B 1DZNA 3NVZB 4DNSA 1DIIA 3BW7A 3I99A 4PVEA 4MLAA 2VAOA 2E3TA 3W8WA 1W1MA 4EC3A 1E8GA 1DIQA 1W1SA 4PYTA 4PWCA 3S1EA 3VTEA 2Q85A 2P13A 2GQUA 4PZFA 2W3RA 1W1KA 2QKNA 3SR6B 2W3SA 1HSKA 4BC9A 5AE3A 2NQWA 2AXRA 1V97A 1WVEA 3RJ8A 2IPIA 2BVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JRO A;  3TSJ A;  2GQT A;  2Y08 A;  1I19 A;  2BVG A;  1QLU A;  3S1C A;  1W1R A;  3D2J A;  1E8H A;  1W1L A;  3AN1 A;  3FW7 A;  3EUB 3;  3KJM A;  3HSU A;  3S1F A;  4PWB A;  3AMZ A;  1ZR6 A;  2W54 A;  3D2H A;  2VFR A;  5I1V A;  2VFV A;  4BBY A;  1E8F A;  3NS1 B;  3TSH A;  2Y3S A;  2Y4G A;  2W55 A;  2MBR A;  3FWA A;  2I0K A;  4BC7 A;  2Y3R A;  3NRZ B;  2Q4W A;  4JAY A;  4XLO A;  1W1J A;  1UXY A;  1WYG A;  2EXR A;  5HHZ A;  1AHV A;  5AE2 A;  3AM9 A;  1FIQ B;  3RJA A;  5AWV A;  2VFS A;  3W8X A;  2WDW A;  1N5W C;  5I1W A;  5L6G A;  5ADZ A;  3TX1 A;  3FW8 A;  3DQ0 A;  4PVH A;  3W8Z A;  4BCA A;  1AHU A;  1VAO A;  3ETR B;  4ML8 A;  1N5X A;  3C0P A;  1AHZ A;  2QPM A;  4O95 A;  2BVF A;  4ZOH B;  1W1Q A;  1VDV A;  1N60 C;  5AE1 A;  1E0Y A;  1F0X A;  1FFV C;  1QLT A;  3POP A;  5HQX A;  1ZXI C;  4OAL A;  3PM9 A;  1N63 C;  4PVJ A;  5L6F A;  1N62 C;  1MBT A;  3D2D A;  4PVK A;  1FFU C;  1MBB A;  1WVF A;  1T3Q C;  5D79 A;  4UD8 A;  3FW9 A;  5K8E A;  3PQB A;  5FXE A;  3JS8 A;  2VFT A;  1N61 C;  4JB1 A;  2VFU A;  5FXF A;  5HMR A;  3GSY A;  1FO4 A;  1W1O A;  3B9J B;  3S1D A;  5FXP A;  5FXD A;  1DZN A;  3NVZ B;  4DNS A;  1DII A;  3BW7 A;  3I99 A;  4PVE A;  4MLA A;  2VAO A;  2E3T A;  3W8W A;  1W1M A;  4EC3 A;  1E8G A;  1DIQ A;  1W1S A;  4PYT A;  4PWC A;  3S1E A;  3VTE A;  2Q85 A;  2GQU A;  4PZF A;  2W3R A;  1W1K A;  2QKN A;  3SR6 B;  2W3S A;  1HSK A;  4BC9 A;  5AE3 A;  2AXR A;  1V97 A;  1WVE A;  3RJ8 A;  2IPI A;  2BVH A; 
#chains in the Genus database with same CATH topology
 1JRO A;  3TSJ A;  2GQT A;  2Y08 A;  1I19 A;  2BVG A;  1QLU A;  3S1C A;  2RK5 A;  5G5G B;  1W1R A;  3D2J A;  1E8H A;  1W1L A;  3AN1 A;  3HRD C;  3FW7 A;  3EUB 3;  3KJM A;  3HSU A;  3S1F A;  4PWB A;  3AMZ A;  1ZR6 A;  2W54 A;  3D2H A;  2OAI A;  3DED A;  2VFR A;  5I1V A;  2VFV A;  4BBY A;  1E8F A;  3NS1 B;  3TSH A;  3LAE A;  2Y3S A;  2R8D A;  2Y4G A;  2W55 A;  2MBR A;  3FWA A;  2I0K A;  1RM6 B;  4BC7 A;  2Y3R A;  3NRZ B;  1JRP A;  2Q4W A;  4JAY A;  4XLO A;  1W1J A;  1UXY A;  1WYG A;  2EXR A;  5HHZ A;  1AHV A;  5AE2 A;  3AM9 A;  1FIQ B;  2P3H A;  3RJA A;  5AWV A;  2VFS A;  2PLI A;  3W8X A;  2UUV A;  2WDW A;  1N5W C;  2O3G A;  5I1W A;  5L6G A;  5ADZ A;  3TX1 A;  3NVW B;  3FW8 A;  3DQ0 A;  4PVH A;  3W8Z A;  4BCA A;  1AHU A;  1VAO A;  3EJE B;  3ETR B;  4HG0 A;  4ML8 A;  1N5X A;  3C0P A;  1AHZ A;  2QPM A;  4O95 A;  2BVF A;  4ZOH B;  1W1Q A;  1VDV A;  1N60 C;  5AE1 A;  1E0Y A;  1F0X A;  1FFV C;  1QLT A;  3LLB A;  3POP A;  5HQX A;  1ZXI C;  4OAL A;  3PM9 A;  1N63 C;  4PVJ A;  2R2Z A;  5L6F A;  1N62 C;  1MBT A;  3NVY B;  2PLS A;  3D2D A;  4PVK A;  2UUU A;  1FFU C;  1MBB A;  1WVF A;  3EJD B;  1T3Q C;  5D79 A;  4UD8 A;  3FW9 A;  5K8E A;  3PQB A;  5FXE A;  3JS8 A;  3NVV B;  2VFT A;  1N61 C;  4JB1 A;  2VFU A;  5FXF A;  5HMR A;  3GSY A;  1FO4 A;  1W1O A;  3B9J B;  3S1D A;  5G5H B;  5FXP A;  2P4P A;  2YVS A;  5FXD A;  1SB3 B;  1DZN A;  3EJB B;  3NVZ B;  4DNS A;  1DII A;  3BW7 A;  3I99 A;  4PVE A;  4MLA A;  2VAO A;  2E3T A;  3W8W A;  1W1M A;  4EC3 A;  1E8G A;  1DIQ A;  1W1S A;  4PYT A;  4PWC A;  3S1E A;  3VTE A;  2Q85 A;  2P13 A;  2GQU A;  4PZF A;  2W3R A;  1W1K A;  2QKN A;  3SR6 B;  2W3S A;  1HSK A;  4BC9 A;  5AE3 A;  2NQW A;  2AXR A;  1V97 A;  1WVE A;  3RJ8 A;  2IPI A;  2BVH A; 
#chains in the Genus database with same CATH homology
 1JRO A;  3TSJ A;  2GQT A;  2Y08 A;  1I19 A;  2BVG A;  1QLU A;  3S1C A;  2RK5 A;  5G5G B;  1W1R A;  3D2J A;  1E8H A;  1W1L A;  3AN1 A;  3HRD C;  3FW7 A;  3EUB 3;  3KJM A;  3HSU A;  3S1F A;  4PWB A;  3AMZ A;  1ZR6 A;  2W54 A;  3D2H A;  2OAI A;  3DED A;  2VFR A;  5I1V A;  2VFV A;  4BBY A;  1E8F A;  3NS1 B;  3TSH A;  3LAE A;  2Y3S A;  2R8D A;  2Y4G A;  2W55 A;  2MBR A;  3FWA A;  2I0K A;  1RM6 B;  4BC7 A;  2Y3R A;  3NRZ B;  1JRP A;  2Q4W A;  4JAY A;  4XLO A;  1W1J A;  1UXY A;  1WYG A;  2EXR A;  5HHZ A;  1AHV A;  5AE2 A;  3AM9 A;  1FIQ B;  2P3H A;  3RJA A;  5AWV A;  2VFS A;  2PLI A;  3W8X A;  2UUV A;  2WDW A;  1N5W C;  2O3G A;  5I1W A;  5L6G A;  5ADZ A;  3TX1 A;  3NVW B;  3FW8 A;  3DQ0 A;  4PVH A;  3W8Z A;  4BCA A;  1AHU A;  1VAO A;  3ETR B;  4HG0 A;  4ML8 A;  1N5X A;  3C0P A;  1AHZ A;  2QPM A;  4O95 A;  2BVF A;  4ZOH B;  1W1Q A;  1VDV A;  1N60 C;  5AE1 A;  1E0Y A;  1F0X A;  1FFV C;  1QLT A;  3LLB A;  3POP A;  5HQX A;  1ZXI C;  4OAL A;  3PM9 A;  1N63 C;  4PVJ A;  2R2Z A;  5L6F A;  1N62 C;  1MBT A;  3NVY B;  2PLS A;  3D2D A;  4PVK A;  2UUU A;  1FFU C;  1MBB A;  1WVF A;  1T3Q C;  5D79 A;  4UD8 A;  3FW9 A;  5K8E A;  3PQB A;  5FXE A;  3JS8 A;  3NVV B;  2VFT A;  1N61 C;  4JB1 A;  2VFU A;  5FXF A;  5HMR A;  3GSY A;  1FO4 A;  1W1O A;  3B9J B;  3S1D A;  5G5H B;  5FXP A;  2P4P A;  2YVS A;  5FXD A;  1SB3 B;  1DZN A;  3NVZ B;  4DNS A;  1DII A;  3BW7 A;  3I99 A;  4PVE A;  4MLA A;  2VAO A;  2E3T A;  3W8W A;  1W1M A;  4EC3 A;  1E8G A;  1DIQ A;  1W1S A;  4PYT A;  4PWC A;  3S1E A;  3VTE A;  2Q85 A;  2P13 A;  2GQU A;  4PZF A;  2W3R A;  1W1K A;  2QKN A;  3SR6 B;  2W3S A;  1HSK A;  4BC9 A;  5AE3 A;  2NQW A;  2AXR A;  1V97 A;  1WVE A;  3RJ8 A;  2IPI A;  2BVH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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