4DOYA

Crystal structure of dibenzothiophene desulfurization enzyme c
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
400
structure length
400
Chain Sequence
NDPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Dibenzothiophene desulfurization enzyme C
publication title Crystal structure of DszC from Rhodococcus sp. XP at 1.79 angstrom
pubmed doi rcsb
source organism Rhodococcus
total genus 147
structure length 400
sequence length 400
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 1.14.14.1: Unspecific monooxygenase.
pdb deposition date 2012-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4doyA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4doyA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4doyA02
3EONA 5K3GA 1EGCA 2YYGA 5K3HA 3TTBA 4P13A 3R7KA 3UU9A 2C12A 2DDHA 1QDBA 3GQTA 1W07A 4G5EA 4Q1OA 3P4TA 3BNFA 3OIBA 3D9GA 1FS9A 4IV6A 1GU6A 3AFFA 3X0YA 2C0UA 4DOYA 2E80A 4XVXA 3RKHA 3EOMA 3MXLA 4X28A 2A1TA 1UDYA 3LG1A 3D9DA 4X28C 3D1IA 5K3JA 4KTOA 3GNCA 1RX0A 3MPJA 1WS9A 3AFEA 3D9FA 1R2JA 3MDEA 3L1TA 2JBSA 2JIFA 2VR0A 2OT4A 3UBRA 2YYLA 2WBIA 2R0MA 4Q5BA 2JBRA 3SCEA 4N5FA 4ZXVA 4U83A 2E81A 4L3ZA 4L3XA 2ZAFA 2PG0A 3II9A 1U8VA 4RM7A 1JQIA 3BNJA 4L3YA 3MPIA 1T9GA 2OR0A 3MMOA 3D6BA 4L1FA 1BUCA 2YYMA 5K3IA 3F29A 3MDDA 4W9UA 2CX9A 2R0NA 2Z1QA 4KCFA 2IX5A 3OWMA 4M9AA 4Q0TA 2UXWA 2IX6A 3BNHA 4Q4UA 1UKWA 3MKHA 3FO3A 3SWOA 3B96A 4NXLA 2RDZA 2JBTA 2VIGA 2YYKA 3BNGA 1IVHA 2YYJA 1IS2A 2DVLA 4O5MA 4HR3A 4IRNA 3SXQA 3X0XA 4JEKA 2ZO5A 3GM6A 1FS8A 1EGDA 3OWAA 1FS7A 4OO2A 2EBAA 2J7AA 2REHA 3HWCA 3M9VA 2RF7A 4Q5CA 3SF6A 4Q17A 3S7WA 2RFQA 3TORA 1OAHA 3FCJA 2D29A 2FONA 1SIQA 1SIRA 4WJYA 3PFDA 1EGEA 3NF4A 4ZYJA 3D9EA 4L38A 2YYIA 3LGQA
chains in the Genus database with same CATH superfamily
3EONA 5K3GA 4MPCA 1EGCA 2YYGA 4AKGA 4E01A 5K3HA 3TTBA 4P13A 3R7KA 1K8TA 1PK0A 1R3BA 1XFUA 4MPNA 4AKHA 3UU9A 2C12A 2XQRB 2DDHA 2AO2A 4JIZA 1GKXA 1QDBA 2Q8FA 2CJ4A 4AKIA 3GQTA 1Y0VA 1K90A 1W07A 4G5EA 4Q1OA 3P4TA 3BNFA 3TZ4A 2Q8HA 3OIBA 3D9GA 1FS9A 2CJ7A 2PO4A 4IV6A 1GU6A 3AFFA 3X0YA 2C0UA 4DOYA 1Y8NA 4XVXA 2CJ6A 2CJ8A 1GKZA 2E80A 2CJ5A 3EOMA 2LFWA 3MXLA 4V26A 3RKHA 4X28A 3TZ0A 2R02A 3TZ2A 5M4PA 2A1TA 4HKSA 4H81A 2F6LA 2BU5A 4KSAA 4QICA 4FF3A 1UDYA 3LG1A 3D9DA 4X28C 2FP2A 5K3JA 4KTOA 3D1IA 3X29A 3C3LA 3D2RA 2XS8A 3GNCA 4KSFA 1RX0A 5B6BA 5B5VA 3MPJA 1GJVA 1WS9A 3AFEA 1RJ1A 3D9FA 5BRKA 2Q8IA 1R2JA 3MDEA 3L1TA 2BU7A 2JBSA 2JIFA 2R05A 2VR0A 3CRLA 2YYLA 2WBIA 2XS1A 2R0MA 2OT4A 4Q5BA 4G97A 4MP2A 3UBRA 2JBRA 2OJQA 1Y8OA 2R03A 1LVCA 3Q22A 3SCEA 4N5FA 4ZXVA 4U83A 3VKGA 4F0XA 2E81A 1RJ4A 1PI1A 4L3ZA 4L3XA 2ZAFA 2PG0A 5GJWE 5B5WA 3Q0AA 5EZ3A 3VADA 3II9A 4J1VA 2GBBA 1U8VA 2BTZA 4RM7A 1JQIA 1XFVA 3BNJA 4L3YA 4E02A 3MPIA 1T9GA 2OR0A 3MMOA 3KMLA 4LQQB 2Q8GA 3D6BA 1XFYA 4L1FA 2BU6A 1BUCA 4MPEA 5GJVE 2QR4A 1JM6A 1XFXA 4V25A 4JIOA 2YYMA 5K3IA 3Q23A 3F29A 1K93A 2AZEA 3MDDA 4W9UA 5M4KA 2CX9A 5J6AA 2R0NA 2YGWA 2Z1QA 4KCFA 1RP3A 2IX5A 2BU2A 4M9AA 2VF1A 3CRKA 3OWMA 4FZ4A 4Q0TA 2UXWA 1Y8PA 2OEVA 2ZKJA 2IX6A 4FF2A 1S26A 3BNHA 4HKRA 4Q4UA 1UKWA 4H7QA 3MKHA 2EBHX 3FO3A 3SWOA 3B96A 4MP7A 2HJNA 2ZDXA 4NXLA 4KS9A 2RDZA 5BRMA 1SC5A 2JBTA 2VIGA 2YYKA 3BNGA 3DJLA 1IVHA 2YYJA 1IS2A 2DVLA 4O5MA 4HR3A 4IRNA 3SXQA 2ZDYA 3X0XA 4LQSB 1SK6A 4JEKA 2ZO5A 3GM6A 3U33A 1FS8A 2EBFX 2FP1A 1XFWA 5M4MA 1EGDA 3OWAA 1XFZA 1FS7A 3C2PA 5J71A 4OO2A 2EBAA 2J7AA 1X90A 3VKHA 2REHA 2OEXA 3HWCA 4H85A 4DZYA 5M4NA 2PNRA 3Q24A 3C46A 4FF4A 4AI6A 3M9VA 2RF7A 4Q5CA 3SF6A 3N0RA 4Q17A 3S7WA 4FF1A 3TZ5A 1XG2B 1X91A 2RFQA 3TORA 1OAHA 2E0AA 3FCJA 2D29A 2FONA 1SIQA 2BU8A 1SIRA 4WJYA 3PFDA 4P79A 1EGEA 3CE2A 3NF4A 4ZYJA 2EC5A 3D9EA 4L38A 2YYIA 3LGQA 4E00A 1X8ZA
chains in the Genus database with same CATH topology
3EONA 5K3GA 1EGCA 2YYGA 5K3HA 3TTBA 4P13A 3R7KA 3UU9A 2C12A 2DDHA 1QDBA 3GQTA 1W07A 4G5EA 4Q1OA 3P4TA 3BNFA 3OIBA 3D9GA 1FS9A 4IV6A 1GU6A 3AFFA 3X0YA 2C0UA 4DOYA 2E80A 4XVXA 3RKHA 3EOMA 3MXLA 4X28A 2A1TA 1UDYA 3LG1A 3D9DA 4X28C 3D1IA 5K3JA 4KTOA 3GNCA 1RX0A 3MPJA 1WS9A 3AFEA 3D9FA 1R2JA 3MDEA 3L1TA 2JBSA 2JIFA 2VR0A 2OT4A 3UBRA 2YYLA 2WBIA 2R0MA 4Q5BA 2JBRA 3SCEA 4N5FA 4ZXVA 4U83A 2E81A 4L3ZA 4L3XA 2ZAFA 2PG0A 3II9A 1U8VA 4RM7A 1JQIA 3BNJA 4L3YA 3MPIA 1T9GA 2OR0A 3MMOA 3D6BA 4L1FA 1BUCA 2YYMA 5K3IA 3F29A 3MDDA 4W9UA 2CX9A 2R0NA 2Z1QA 4KCFA 2IX5A 3OWMA 4M9AA 4Q0TA 2UXWA 2IX6A 3BNHA 4Q4UA 1UKWA 3MKHA 3FO3A 3SWOA 3B96A 4NXLA 2RDZA 2JBTA 2VIGA 2YYKA 3BNGA 1IVHA 2YYJA 1IS2A 2DVLA 4O5MA 4HR3A 4IRNA 3SXQA 3X0XA 4JEKA 2ZO5A 3GM6A 1FS8A 1EGDA 3OWAA 1FS7A 4OO2A 2EBAA 2J7AA 2REHA 3HWCA 3M9VA 2RF7A 4Q5CA 3SF6A 4Q17A 3S7WA 2RFQA 3TORA 1OAHA 3FCJA 2D29A 2FONA 1SIQA 1SIRA 4WJYA 3PFDA 1EGEA 3NF4A 4ZYJA 3D9EA 4L38A 2YYIA 3LGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EON A;  5K3G A;  1EGC A;  2YYG A;  5K3H A;  3TTB A;  4P13 A;  3R7K A;  3UU9 A;  2C12 A;  2DDH A;  1QDB A;  3GQT A;  1W07 A;  4G5E A;  4Q1O A;  3P4T A;  3BNF A;  3OIB A;  3D9G A;  1FS9 A;  4IV6 A;  1GU6 A;  3AFF A;  3X0Y A;  2C0U A;  4DOY A;  2E80 A;  4XVX A;  3RKH A;  3EOM A;  3MXL A;  4X28 A;  2A1T A;  1UDY A;  3LG1 A;  3D9D A;  4X28 C;  3D1I A;  5K3J A;  4KTO A;  3GNC A;  1RX0 A;  3MPJ A;  1WS9 A;  3AFE A;  3D9F A;  1R2J A;  3MDE A;  3L1T A;  2JBS A;  2JIF A;  2VR0 A;  2OT4 A;  3UBR A;  2YYL A;  2WBI A;  2R0M A;  4Q5B A;  2JBR A;  3SCE A;  4N5F A;  4ZXV A;  4U83 A;  2E81 A;  4L3Z A;  4L3X A;  2ZAF A;  2PG0 A;  3II9 A;  1U8V A;  4RM7 A;  1JQI A;  3BNJ A;  4L3Y A;  3MPI A;  1T9G A;  2OR0 A;  3MMO A;  3D6B A;  4L1F A;  1BUC A;  2YYM A;  5K3I A;  3F29 A;  3MDD A;  4W9U A;  2CX9 A;  2R0N A;  2Z1Q A;  4KCF A;  2IX5 A;  3OWM A;  4M9A A;  4Q0T A;  2UXW A;  2IX6 A;  3BNH A;  4Q4U A;  1UKW A;  3MKH A;  3FO3 A;  3SWO A;  3B96 A;  4NXL A;  2RDZ A;  2JBT A;  2VIG A;  2YYK A;  3BNG A;  1IVH A;  2YYJ A;  1IS2 A;  2DVL A;  4O5M A;  4HR3 A;  4IRN A;  3SXQ A;  3X0X A;  4JEK A;  2ZO5 A;  3GM6 A;  1FS8 A;  1EGD A;  3OWA A;  1FS7 A;  4OO2 A;  2EBA A;  2J7A A;  2REH A;  3HWC A;  3M9V A;  2RF7 A;  4Q5C A;  3SF6 A;  4Q17 A;  3S7W A;  2RFQ A;  3TOR A;  1OAH A;  3FCJ A;  2D29 A;  2FON A;  1SIQ A;  1SIR A;  4WJY A;  3PFD A;  1EGE A;  3NF4 A;  4ZYJ A;  3D9E A;  4L38 A;  2YYI A;  3LGQ A; 
#chains in the Genus database with same CATH topology
 3EON A;  5K3G A;  4MPC A;  1EGC A;  2YYG A;  4AKG A;  4E01 A;  5K3H A;  3TTB A;  4P13 A;  3R7K A;  1K8T A;  1PK0 A;  1R3B A;  1XFU A;  4MPN A;  4AKH A;  3UU9 A;  2C12 A;  2XQR B;  2DDH A;  2AO2 A;  4JIZ A;  1GKX A;  1QDB A;  2Q8F A;  2CJ4 A;  4AKI A;  3GQT A;  1Y0V A;  1K90 A;  1W07 A;  4G5E A;  4Q1O A;  3P4T A;  3BNF A;  3TZ4 A;  2Q8H A;  3OIB A;  3D9G A;  1FS9 A;  2CJ7 A;  2PO4 A;  4IV6 A;  1GU6 A;  3AFF A;  3X0Y A;  2C0U A;  4DOY A;  1Y8N A;  4XVX A;  2CJ6 A;  2CJ8 A;  1GKZ A;  2E80 A;  2CJ5 A;  3EOM A;  2LFW A;  3MXL A;  4V26 A;  3RKH A;  4X28 A;  3TZ0 A;  2R02 A;  3TZ2 A;  5M4P A;  2A1T A;  4HKS A;  4H81 A;  2F6L A;  2BU5 A;  4KSA A;  4QIC A;  4FF3 A;  1UDY A;  3LG1 A;  3D9D A;  4X28 C;  2FP2 A;  5K3J A;  4KTO A;  3D1I A;  3X29 A;  3C3L A;  3D2R A;  2XS8 A;  3GNC A;  4KSF A;  1RX0 A;  5B6B A;  5B5V A;  3MPJ A;  1GJV A;  1WS9 A;  3AFE A;  1RJ1 A;  3D9F A;  5BRK A;  2Q8I A;  1R2J A;  3MDE A;  3L1T A;  2BU7 A;  2JBS A;  2JIF A;  2R05 A;  2VR0 A;  3CRL A;  2YYL A;  2WBI A;  2XS1 A;  2R0M A;  2OT4 A;  4Q5B A;  4G97 A;  4MP2 A;  3UBR A;  2JBR A;  2OJQ A;  1Y8O A;  2R03 A;  1LVC A;  3Q22 A;  3SCE A;  4N5F A;  4ZXV A;  4U83 A;  3VKG A;  4F0X A;  2E81 A;  1RJ4 A;  1PI1 A;  4L3Z A;  4L3X A;  2ZAF A;  2PG0 A;  5GJW E;  5B5W A;  3Q0A A;  5EZ3 A;  3VAD A;  3II9 A;  4J1V A;  2GBB A;  1U8V A;  2BTZ A;  4RM7 A;  1JQI A;  1XFV A;  3BNJ A;  4L3Y A;  4E02 A;  3MPI A;  1T9G A;  2OR0 A;  3MMO A;  3KML A;  4LQQ B;  2Q8G A;  3D6B A;  1XFY A;  4L1F A;  2BU6 A;  1BUC A;  4MPE A;  5GJV E;  2QR4 A;  1JM6 A;  1XFX A;  4V25 A;  4JIO A;  2YYM A;  5K3I A;  3Q23 A;  3F29 A;  1K93 A;  2AZE A;  3MDD A;  4W9U A;  5M4K A;  2CX9 A;  5J6A A;  2R0N A;  2YGW A;  2Z1Q A;  4KCF A;  1RP3 A;  2IX5 A;  2BU2 A;  4M9A A;  2VF1 A;  3CRK A;  3OWM A;  4FZ4 A;  4Q0T A;  2UXW A;  1Y8P A;  2OEV A;  2ZKJ A;  2IX6 A;  4FF2 A;  1S26 A;  3BNH A;  4HKR A;  4Q4U A;  1UKW A;  4H7Q A;  3MKH A;  2EBH X;  3FO3 A;  3SWO A;  3B96 A;  4MP7 A;  2HJN A;  2ZDX A;  4NXL A;  4KS9 A;  2RDZ A;  5BRM A;  1SC5 A;  2JBT A;  2VIG A;  2YYK A;  3BNG A;  3DJL A;  1IVH A;  2YYJ A;  1IS2 A;  2DVL A;  4O5M A;  4HR3 A;  4IRN A;  3SXQ A;  2ZDY A;  3X0X A;  4LQS B;  1SK6 A;  4JEK A;  2ZO5 A;  3GM6 A;  3U33 A;  1FS8 A;  2EBF X;  2FP1 A;  1XFW A;  5M4M A;  1EGD A;  3OWA A;  1XFZ A;  1FS7 A;  3C2P A;  5J71 A;  4OO2 A;  2EBA A;  2J7A A;  1X90 A;  3VKH A;  2REH A;  2OEX A;  3HWC A;  4H85 A;  4DZY A;  5M4N A;  2PNR A;  3Q24 A;  3C46 A;  4FF4 A;  4AI6 A;  3M9V A;  2RF7 A;  4Q5C A;  3SF6 A;  3N0R A;  4Q17 A;  3S7W A;  4FF1 A;  3TZ5 A;  1XG2 B;  1X91 A;  2RFQ A;  3TOR A;  1OAH A;  2E0A A;  3FCJ A;  2D29 A;  2FON A;  1SIQ A;  2BU8 A;  1SIR A;  4WJY A;  3PFD A;  4P79 A;  1EGE A;  3CE2 A;  3NF4 A;  4ZYJ A;  2EC5 A;  3D9E A;  4L38 A;  2YYI A;  3LGQ A;  4E00 A;  1X8Z A; 
#chains in the Genus database with same CATH homology
 3EON A;  5K3G A;  1EGC A;  2YYG A;  5K3H A;  3TTB A;  4P13 A;  3R7K A;  3UU9 A;  2C12 A;  2DDH A;  1QDB A;  3GQT A;  1W07 A;  4G5E A;  4Q1O A;  3P4T A;  3BNF A;  3OIB A;  3D9G A;  1FS9 A;  4IV6 A;  1GU6 A;  3AFF A;  3X0Y A;  2C0U A;  4DOY A;  2E80 A;  4XVX A;  3RKH A;  3EOM A;  3MXL A;  4X28 A;  2A1T A;  1UDY A;  3LG1 A;  3D9D A;  4X28 C;  3D1I A;  5K3J A;  4KTO A;  3GNC A;  1RX0 A;  3MPJ A;  1WS9 A;  3AFE A;  3D9F A;  1R2J A;  3MDE A;  3L1T A;  2JBS A;  2JIF A;  2VR0 A;  2OT4 A;  3UBR A;  2YYL A;  2WBI A;  2R0M A;  4Q5B A;  2JBR A;  3SCE A;  4N5F A;  4ZXV A;  4U83 A;  2E81 A;  4L3Z A;  4L3X A;  2ZAF A;  2PG0 A;  3II9 A;  1U8V A;  4RM7 A;  1JQI A;  3BNJ A;  4L3Y A;  3MPI A;  1T9G A;  2OR0 A;  3MMO A;  3D6B A;  4L1F A;  1BUC A;  2YYM A;  5K3I A;  3F29 A;  3MDD A;  4W9U A;  2CX9 A;  2R0N A;  2Z1Q A;  4KCF A;  2IX5 A;  3OWM A;  4M9A A;  4Q0T A;  2UXW A;  2IX6 A;  3BNH A;  4Q4U A;  1UKW A;  3MKH A;  3FO3 A;  3SWO A;  3B96 A;  4NXL A;  2RDZ A;  2JBT A;  2VIG A;  2YYK A;  3BNG A;  1IVH A;  2YYJ A;  1IS2 A;  2DVL A;  4O5M A;  4HR3 A;  4IRN A;  3SXQ A;  3X0X A;  4JEK A;  2ZO5 A;  3GM6 A;  1FS8 A;  1EGD A;  3OWA A;  1FS7 A;  4OO2 A;  2EBA A;  2J7A A;  2REH A;  3HWC A;  3M9V A;  2RF7 A;  4Q5C A;  3SF6 A;  4Q17 A;  3S7W A;  2RFQ A;  3TOR A;  1OAH A;  3FCJ A;  2D29 A;  2FON A;  1SIQ A;  1SIR A;  4WJY A;  3PFD A;  1EGE A;  3NF4 A;  4ZYJ A;  3D9E A;  4L38 A;  2YYI A;  3LGQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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