4DRAE

Crystal structure of mhf complex
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
74
structure length
74
Chain Sequence
SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Centromere protein S
publication title The structure of the FANCM-MHF complex reveals physical features for functional assembly
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 74
sequence length 74
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2012-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF09415 CENP-X CENP-S associating Centromere protein X
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.100 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 4draE02
4DRAE 4DRBJ 4E44B 4E45B 4NE3B 4NE5B 4NE6B 3B0BC
chains in the Genus database with same CATH superfamily
1AIPC 4E44B 1N3SA 2WSFK 3VEJA 2WSEG 4DU6A 4E45B 1EFUB 4NE6B 1FBXA 2PN0A 2P11A 2WSCK 4JA3A 2WSFG 4Q7JA 2LO0A 4QPMA 1TFEA 4NE5B 2O01G 1A8RA 4DRAE 1EL6A 4DRBJ 2KR1A 5DMZA 1WM9A 2WSCG 3BMBA 1WURA 3LW5K 1N3TA 1N3RA 1IS8A 2WSEK 1GTPA 1WUQA 1FB1A 4R8QA 1IS7A 1A9CA 2LNZA 3LW5G 4NE3B 1WPLA 3B0BC
chains in the Genus database with same CATH topology
1AIPC 4E44B 1N3SA 3VEJA 4DU6A 4E45B 1EFUB 4NE6B 1FBXA 2PN0A 2P11A 4JA3A 4Q7JA 2LO0A 4QPMA 1TFEA 4NE5B 1A8RA 4DRAE 1EL6A 4DRBJ 2KR1A 5DMZA 1WM9A 3BMBA 1WURA 1N3TA 1N3RA 1IS8A 1GTPA 1WUQA 1FB1A 4R8QA 1IS7A 1A9CA 2LNZA 4NE3B 1WPLA 3B0BC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DRA E;  4DRB J;  4E44 B;  4E45 B;  4NE3 B;  4NE5 B;  4NE6 B;  3B0B C; 
#chains in the Genus database with same CATH topology
 1AIP C;  4E44 B;  1N3S A;  2WSF K;  3VEJ A;  2WSE G;  4DU6 A;  4E45 B;  1EFU B;  4NE6 B;  1FBX A;  2PN0 A;  2P11 A;  2WSC K;  4JA3 A;  2WSF G;  4Q7J A;  2LO0 A;  4QPM A;  1TFE A;  4NE5 B;  2O01 G;  1A8R A;  4DRA E;  1EL6 A;  4DRB J;  2KR1 A;  5DMZ A;  1WM9 A;  2WSC G;  3BMB A;  1WUR A;  3LW5 K;  1N3T A;  1N3R A;  1IS8 A;  2WSE K;  1GTP A;  1WUQ A;  1FB1 A;  4R8Q A;  1IS7 A;  1A9C A;  2LNZ A;  3LW5 G;  4NE3 B;  1WPL A;  3B0B C; 
#chains in the Genus database with same CATH homology
 1AIP C;  4E44 B;  1N3S A;  3VEJ A;  4DU6 A;  4E45 B;  1EFU B;  4NE6 B;  1FBX A;  2PN0 A;  2P11 A;  4JA3 A;  4Q7J A;  2LO0 A;  4QPM A;  1TFE A;  4NE5 B;  1A8R A;  4DRA E;  1EL6 A;  4DRB J;  2KR1 A;  5DMZ A;  1WM9 A;  3BMB A;  1WUR A;  1N3T A;  1N3R A;  1IS8 A;  1GTP A;  1WUQ A;  1FB1 A;  4R8Q A;  1IS7 A;  1A9C A;  2LNZ A;  4NE3 B;  1WPL A;  3B0B C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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