4DV7D

Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, a915g, bound with streptomycin
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
publication title A structural basis for streptomycin resistance
rcsb
total genus 57
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 4dv7D01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 4dv7D02
2UUCD 2UXDD 4DR7D 4DV7D 4JI0D 3T1HD 2HHHD 1N32D 2UU9D 3OTOD 3KBGA 4YHHD 2JANA 1N36D 4YY3D 4GKJD 1KSKA 2VQED 1N34D 4JI6D 4NXMD 4JI2D 1HNXD 4JI1D 4X62D 2F4VD 2K6PA 4DV4D 4AQYD 4OUDA 4JI5D 4DR1D 4JI3D 1XMQD 1IBKD 3DH3A 2ISTA 4LGTA 4LF9D 4NXND 1H3FA 4JYAD 4X66D 3HP7A 4X64D 2E5LD 3T1YD 1H3EA 1KSLA 4DUZD 4KHPD 4DV3D 4DR2D 4DV2D 4B3SD 4OX9D 5LMUD 1IBMD 1N33D 5BR8D 1XNRD 2UXBD 4K0KD 4DV0D 2UUAD 1FKAD 4LFAD 1XNQD 1IBLD 4LF7D 1HNWD 1FJGD 4LF4D 2KTLA 2ZM6D 4JI4D 1DM9A 4DV1D 1KSVA 1I94D 4DR4D 1J5ED 4JI7D 1C05A 4B3TD 2UXCD 4LFBD 1P9KA 4LFCD 4LF5D 1HR0D 4JI8D 4JV5D 4LF6D 2UUBD 4DUYD 4DR5D 1XMOD 4B3MD 4B3RD 4DR6D 4DV6D 4DR3D 1VIOA 4DV5D 1HNZD 1C06A 1JH3A 5IWAD 4X65D 5LMND 4GKKD 2VQFD 4LF8D
chains in the Genus database with same CATH superfamily
2UUCD 3CMMA 3J80E 2UXDD 4DR7D 4DV7D 4NNJA 4JI0D 3T1HD 2HHHD 1N32D 2UU9D 3OTOD 3KBGA 5LL6S 5KNLA 4YHHD 2JANA 1N36D 4YY3D 4GKJD 1KSKA 2VQED 1N34D 4JI6D 4NXMD 2L3NA 4JI2D 4W5VB 1HNXD 4JI1D 4X62D 2F4VD 2K6PA 2ZTBA 4DV4D 4AQYD 4OUDA 4JI5D 5A2QE 4DR1D 3J7AF 4JI3D 1XMQD 1IBKD 3DH3A 2ISTA 4LGTA 4LF9D 4NXND 1H3FA 4JYAD 4X66D 3HP7A 4X64D 4II2A 2E5LD 3T1YD 1H3EA 1Y8RB 1KSLA 4DUZD 4KHPD 4DV3D 2NVUB 4DR2D 4DV2D 4B3SD 4OX9D 2I1SA 5LMUD 1IBMD 1N33D 3FN1A 1Y8QB 5BR8D 1XNRD 2UXBD 4K0KD 4DV0D 2UUAD 1FKAD 3KYCB 4LFAD 1XNQD 1IBLD 4LF7D 1HNWD 1FJGD 3JAME 4LF4D 2KTLA 2ZM6D 1Y8XB 4JI4D 1DM9A 4DV1D 3ONHA 3J81E 5FLXE 1KSVA 1I94D 4DR4D 1J5ED 4JI7D 5FQ2B 1C05A 4B3TD 2UXCD 4LFBD 1P9KA 4LFCD 4LF5D 1HR0D 4JI8D 4JV5D 4LF6D 2UUBD 3KYDB 4DUYD 4DR5D 1XMOD 4B3MD 4B3RD 4DR6D 4II3A 5IT9E 4DV6D 4DR3D 1VIOA 4DV5D 1HNZD 1C06A 2LQ7A 1JH3A 5IWAD 4X65D 5LMND 4GKKD 2VQFD 3ONGA 4LF8D
chains in the Genus database with same CATH topology
2UUCD 2UXDD 4DR7D 4DV7D 4JI0D 3T1HD 2HHHD 1N32D 2UU9D 3OTOD 3KBGA 4YHHD 2JANA 1N36D 4YY3D 4GKJD 1KSKA 2VQED 1N34D 4JI6D 4NXMD 2L3NA 4JI2D 1HNXD 4JI1D 4X62D 2F4VD 2K6PA 4DV4D 4AQYD 4OUDA 4JI5D 4DR1D 4JI3D 1XMQD 1IBKD 3DH3A 2ISTA 4LGTA 4LF9D 4NXND 1H3FA 4JYAD 4X66D 3HP7A 4X64D 2E5LD 3T1YD 1H3EA 1KSLA 4DUZD 4KHPD 4DV3D 4DR2D 4DV2D 4B3SD 4OX9D 5LMUD 1IBMD 1N33D 5BR8D 1XNRD 2UXBD 4K0KD 4DV0D 2UUAD 1FKAD 4LFAD 1XNQD 1IBLD 4LF7D 1HNWD 1FJGD 4LF4D 2KTLA 2ZM6D 4JI4D 1DM9A 4DV1D 1KSVA 1I94D 4DR4D 1J5ED 4JI7D 1C05A 4B3TD 2UXCD 4LFBD 1P9KA 4LFCD 4LF5D 1HR0D 4JI8D 4JV5D 4LF6D 2UUBD 4DUYD 4DR5D 1XMOD 4B3MD 4B3RD 4DR6D 4DV6D 4DR3D 1VIOA 4DV5D 1HNZD 1C06A 1JH3A 5IWAD 4X65D 5LMND 4GKKD 2VQFD 4LF8D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UUC D;  2UXD D;  4DR7 D;  4DV7 D;  4JI0 D;  3T1H D;  2HHH D;  1N32 D;  2UU9 D;  3OTO D;  3KBG A;  4YHH D;  2JAN A;  1N36 D;  4YY3 D;  4GKJ D;  1KSK A;  2VQE D;  1N34 D;  4JI6 D;  4NXM D;  4JI2 D;  1HNX D;  4JI1 D;  4X62 D;  2F4V D;  2K6P A;  4DV4 D;  4AQY D;  4OUD A;  4JI5 D;  4DR1 D;  4JI3 D;  1XMQ D;  1IBK D;  3DH3 A;  2IST A;  4LGT A;  4LF9 D;  4NXN D;  1H3F A;  4JYA D;  4X66 D;  3HP7 A;  4X64 D;  2E5L D;  3T1Y D;  1H3E A;  1KSL A;  4DUZ D;  4KHP D;  4DV3 D;  4DR2 D;  4DV2 D;  4B3S D;  4OX9 D;  5LMU D;  1IBM D;  1N33 D;  5BR8 D;  1XNR D;  2UXB D;  4K0K D;  4DV0 D;  2UUA D;  1FKA D;  4LFA D;  1XNQ D;  1IBL D;  4LF7 D;  1HNW D;  1FJG D;  4LF4 D;  2KTL A;  2ZM6 D;  4JI4 D;  1DM9 A;  4DV1 D;  1KSV A;  1I94 D;  4DR4 D;  1J5E D;  4JI7 D;  1C05 A;  4B3T D;  2UXC D;  4LFB D;  1P9K A;  4LFC D;  4LF5 D;  1HR0 D;  4JI8 D;  4JV5 D;  4LF6 D;  2UUB D;  4DUY D;  4DR5 D;  1XMO D;  4B3M D;  4B3R D;  4DR6 D;  4DV6 D;  4DR3 D;  1VIO A;  4DV5 D;  1HNZ D;  1C06 A;  1JH3 A;  5IWA D;  4X65 D;  5LMN D;  4GKK D;  2VQF D;  4LF8 D; 
#chains in the Genus database with same CATH topology
 2UUC D;  3CMM A;  3J80 E;  2UXD D;  4DR7 D;  4DV7 D;  4NNJ A;  4JI0 D;  3T1H D;  2HHH D;  1N32 D;  2UU9 D;  3OTO D;  3KBG A;  5LL6 S;  5KNL A;  4YHH D;  2JAN A;  1N36 D;  4YY3 D;  4GKJ D;  1KSK A;  2VQE D;  1N34 D;  4JI6 D;  4NXM D;  2L3N A;  4JI2 D;  4W5V B;  1HNX D;  4JI1 D;  4X62 D;  2F4V D;  2K6P A;  2ZTB A;  4DV4 D;  4AQY D;  4OUD A;  4JI5 D;  5A2Q E;  4DR1 D;  3J7A F;  4JI3 D;  1XMQ D;  1IBK D;  3DH3 A;  2IST A;  4LGT A;  4LF9 D;  4NXN D;  1H3F A;  4JYA D;  4X66 D;  3HP7 A;  4X64 D;  4II2 A;  2E5L D;  3T1Y D;  1H3E A;  1Y8R B;  1KSL A;  4DUZ D;  4KHP D;  4DV3 D;  2NVU B;  4DR2 D;  4DV2 D;  4B3S D;  4OX9 D;  2I1S A;  5LMU D;  1IBM D;  1N33 D;  3FN1 A;  1Y8Q B;  5BR8 D;  1XNR D;  2UXB D;  4K0K D;  4DV0 D;  2UUA D;  1FKA D;  3KYC B;  4LFA D;  1XNQ D;  1IBL D;  4LF7 D;  1HNW D;  1FJG D;  3JAM E;  4LF4 D;  2KTL A;  2ZM6 D;  1Y8X B;  4JI4 D;  1DM9 A;  4DV1 D;  3ONH A;  3J81 E;  5FLX E;  1KSV A;  1I94 D;  4DR4 D;  1J5E D;  4JI7 D;  5FQ2 B;  1C05 A;  4B3T D;  2UXC D;  4LFB D;  1P9K A;  4LFC D;  4LF5 D;  1HR0 D;  4JI8 D;  4JV5 D;  4LF6 D;  2UUB D;  3KYD B;  4DUY D;  4DR5 D;  1XMO D;  4B3M D;  4B3R D;  4DR6 D;  4II3 A;  5IT9 E;  4DV6 D;  4DR3 D;  1VIO A;  4DV5 D;  1HNZ D;  1C06 A;  2LQ7 A;  1JH3 A;  5IWA D;  4X65 D;  5LMN D;  4GKK D;  2VQF D;  3ONG A;  4LF8 D; 
#chains in the Genus database with same CATH homology
 2UUC D;  2UXD D;  4DR7 D;  4DV7 D;  4JI0 D;  3T1H D;  2HHH D;  1N32 D;  2UU9 D;  3OTO D;  3KBG A;  4YHH D;  2JAN A;  1N36 D;  4YY3 D;  4GKJ D;  1KSK A;  2VQE D;  1N34 D;  4JI6 D;  4NXM D;  2L3N A;  4JI2 D;  1HNX D;  4JI1 D;  4X62 D;  2F4V D;  2K6P A;  4DV4 D;  4AQY D;  4OUD A;  4JI5 D;  4DR1 D;  4JI3 D;  1XMQ D;  1IBK D;  3DH3 A;  2IST A;  4LGT A;  4LF9 D;  4NXN D;  1H3F A;  4JYA D;  4X66 D;  3HP7 A;  4X64 D;  2E5L D;  3T1Y D;  1H3E A;  1KSL A;  4DUZ D;  4KHP D;  4DV3 D;  4DR2 D;  4DV2 D;  4B3S D;  4OX9 D;  5LMU D;  1IBM D;  1N33 D;  5BR8 D;  1XNR D;  2UXB D;  4K0K D;  4DV0 D;  2UUA D;  1FKA D;  4LFA D;  1XNQ D;  1IBL D;  4LF7 D;  1HNW D;  1FJG D;  4LF4 D;  2KTL A;  2ZM6 D;  4JI4 D;  1DM9 A;  4DV1 D;  1KSV A;  1I94 D;  4DR4 D;  1J5E D;  4JI7 D;  1C05 A;  4B3T D;  2UXC D;  4LFB D;  1P9K A;  4LFC D;  4LF5 D;  1HR0 D;  4JI8 D;  4JV5 D;  4LF6 D;  2UUB D;  4DUY D;  4DR5 D;  1XMO D;  4B3M D;  4B3R D;  4DR6 D;  4DV6 D;  4DR3 D;  1VIO A;  4DV5 D;  1HNZ D;  1C06 A;  1JH3 A;  5IWA D;  4X65 D;  5LMN D;  4GKK D;  2VQF D;  4LF8 D; 
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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