4E0JA

Protelomerase tela r255a mutant complexed with dna hairpin product
Total Genus 105
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
319
structure length
319
Chain Sequence
YPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRAPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSYMTYTLPEDRDNALARL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Dna binding protein/dna
molecule keywords Protelomerase
publication title An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
total genus 105
structure length 319
sequence length 319
ec nomenclature
pdb deposition date 2012-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4e0jA02
4E0JA 2V6EA 4E0ZA 4F41A 4F43A 4E10A 4DWPA 4E0YA 4E0PA 4E0GA
chains in the Genus database with same CATH superfamily
3NKHA 5C6KA 1AE9A 5CRXA 3SQIA 1Z19A 4F43A 4DWPA 1P7DA 1M6XA 1PVQA 1FLOA 2A3VA 1OUQA 4A8EA 4DKSA 3C28A 1DRGA 4E0ZA 1Z1BA 1PVRA 3MGVA 4E0YA 3T79A 5DORA 1P4EC 1MA7A 2CRXA 1AIHA 1F44A 4F41A 1Q3VA 1NZBA 1XNSA 4E10A 1PVPA 4CRXA 1M6XC 4ACOA 4E0GA 3UXUA 1Q3UA 4E0JA 2HOFA 2V6EA 1A0PA 3CRXA 3VCFA 3C29A 1P4EA 5DCFA 2HOIA 1XO0A 4E0PA 1KBUA 1CRXA
chains in the Genus database with same CATH topology
4E0JA 2V6EA 4E0ZA 4F41A 3SQIA 4F43A 4E10A 4DWPA 4E0YA 3T79A 4ACOA 4E0PA 4E0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E0J A;  2V6E A;  4E0Z A;  4F41 A;  4F43 A;  4E10 A;  4DWP A;  4E0Y A;  4E0P A;  4E0G A; 
#chains in the Genus database with same CATH topology
 3NKH A;  5C6K A;  1AE9 A;  5CRX A;  3SQI A;  1Z19 A;  4F43 A;  4DWP A;  1P7D A;  1M6X A;  1PVQ A;  1FLO A;  2A3V A;  1OUQ A;  4A8E A;  4DKS A;  3C28 A;  1DRG A;  4E0Z A;  1Z1B A;  1PVR A;  3MGV A;  4E0Y A;  3T79 A;  5DOR A;  1P4E C;  1MA7 A;  2CRX A;  1AIH A;  1F44 A;  4F41 A;  1Q3V A;  1NZB A;  1XNS A;  4E10 A;  1PVP A;  4CRX A;  1M6X C;  4ACO A;  4E0G A;  3UXU A;  1Q3U A;  4E0J A;  2HOF A;  2V6E A;  1A0P A;  3CRX A;  3VCF A;  3C29 A;  1P4E A;  5DCF A;  2HOI A;  1XO0 A;  4E0P A;  1KBU A;  1CRX A; 
#chains in the Genus database with same CATH homology
 4E0J A;  2V6E A;  4E0Z A;  4F41 A;  3SQI A;  4F43 A;  4E10 A;  4DWP A;  4E0Y A;  3T79 A;  4ACO A;  4E0P A;  4E0G A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...