4E0PA

Protelomerase tela covalently complexed with substrate dna
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
318
structure length
317
Chain Sequence
YPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRRPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSMTYTLPEDRDNALAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protelomerase
publication title An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
molecule tags Dna binding protein/dna
total genus 110
structure length 317
sequence length 318
ec nomenclature
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4e0pA02
4DWPA 4E0JA 4E0PA 4E0ZA 2V6EA 4E0YA 4E0GA 4F41A 4E10A 4F43A
chains in the Genus database with same CATH superfamily
4CRXA 4E0PA 5DCFA 3MGVA 4E0YA 1F44A 4E10A 5C6KA 1P7DA 1M6XA 4ACOA 1MA7A 1P4EA 4DWPA 1XNSA 1KBUA 2CRXA 2A3VA 5CRXA 1OUQA 1PVPA 1NZBA 1M6XC 1FLOA 1Z1BA 1P4EC 1Q3VA 1Q3UA 1AIHA 2HOIA 4A8EA 3VCFA 2HOFA 1A0PA 3C29A 3NKHA 5DORA 1PVQA 1PVRA 3SQIA 4E0JA 1CRXA 4E0ZA 1DRGA 1XO0A 2V6EA 3CRXA 4E0GA 1Z19A 1AE9A 3UXUA 4DKSA 4F41A 4F43A 3C28A 3T79A
chains in the Genus database with same CATH topology
3SQIA 4DWPA 4E0JA 4E0PA 4E0ZA 2V6EA 4E0YA 4E0GA 4F41A 4E10A 3T79A 4F43A 4ACOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DWP A;  4E0J A;  4E0P A;  4E0Z A;  2V6E A;  4E0Y A;  4E0G A;  4F41 A;  4E10 A;  4F43 A; 
#chains in the Genus database with same CATH topology
 4CRX A;  4E0P A;  5DCF A;  3MGV A;  4E0Y A;  1F44 A;  4E10 A;  5C6K A;  1P7D A;  1M6X A;  4ACO A;  1MA7 A;  1P4E A;  4DWP A;  1XNS A;  1KBU A;  2CRX A;  2A3V A;  5CRX A;  1OUQ A;  1PVP A;  1NZB A;  1M6X C;  1FLO A;  1Z1B A;  1P4E C;  1Q3V A;  1Q3U A;  1AIH A;  2HOI A;  4A8E A;  3VCF A;  2HOF A;  1A0P A;  3C29 A;  3NKH A;  5DOR A;  1PVQ A;  1PVR A;  3SQI A;  4E0J A;  1CRX A;  4E0Z A;  1DRG A;  1XO0 A;  2V6E A;  3CRX A;  4E0G A;  1Z19 A;  1AE9 A;  3UXU A;  4DKS A;  4F41 A;  4F43 A;  3C28 A;  3T79 A; 
#chains in the Genus database with same CATH homology
 3SQI A;  4DWP A;  4E0J A;  4E0P A;  4E0Z A;  2V6E A;  4E0Y A;  4E0G A;  4F41 A;  4E10 A;  3T79 A;  4F43 A;  4ACO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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