4E0ZA

Protelomerase tela r205a covalently complexed with substrate dna
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
319
structure length
318
Chain Sequence
YPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEAARVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRRPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSMTYTLPEDRDNALARL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protelomerase
publication title An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
molecule tags Dna binding protein/dna
total genus 111
structure length 318
sequence length 319
ec nomenclature
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4e0zA02
4E0YA 4F43A 2V6EA 4E0PA 4E0JA 4E0ZA 4E0GA 4F41A 4DWPA 4E10A
chains in the Genus database with same CATH superfamily
1Q3UA 1M6XA 1A0PA 3VCFA 2CRXA 3CRXA 1PVPA 1FLOA 1PVQA 4CRXA 4E0PA 1OUQA 4E0GA 4ACOA 4E0YA 5DORA 1M6XC 3SQIA 1AE9A 1AIHA 3UXUA 5DCFA 1XO0A 1P4EC 4E0JA 4E0ZA 2HOIA 4E10A 1Z1BA 4DKSA 1MA7A 1P7DA 4A8EA 1Z19A 3T79A 1NZBA 1DRGA 3NKHA 2A3VA 5CRXA 1Q3VA 1XNSA 1KBUA 1F44A 4DWPA 3C29A 2V6EA 1P4EA 3MGVA 4F43A 1PVRA 2HOFA 1CRXA 3C28A 4F41A 5C6KA
chains in the Genus database with same CATH topology
4E0YA 3SQIA 4F43A 3T79A 2V6EA 4E0PA 4E0JA 4E0GA 4E0ZA 4ACOA 4F41A 4DWPA 4E10A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E0Y A;  4F43 A;  2V6E A;  4E0P A;  4E0J A;  4E0Z A;  4E0G A;  4F41 A;  4DWP A;  4E10 A; 
#chains in the Genus database with same CATH topology
 1Q3U A;  1M6X A;  1A0P A;  3VCF A;  2CRX A;  3CRX A;  1PVP A;  1FLO A;  1PVQ A;  4CRX A;  4E0P A;  1OUQ A;  4E0G A;  4ACO A;  4E0Y A;  5DOR A;  1M6X C;  3SQI A;  1AE9 A;  1AIH A;  3UXU A;  5DCF A;  1XO0 A;  1P4E C;  4E0J A;  4E0Z A;  2HOI A;  4E10 A;  1Z1B A;  4DKS A;  1MA7 A;  1P7D A;  4A8E A;  1Z19 A;  3T79 A;  1NZB A;  1DRG A;  3NKH A;  2A3V A;  5CRX A;  1Q3V A;  1XNS A;  1KBU A;  1F44 A;  4DWP A;  3C29 A;  2V6E A;  1P4E A;  3MGV A;  4F43 A;  1PVR A;  2HOF A;  1CRX A;  3C28 A;  4F41 A;  5C6K A; 
#chains in the Genus database with same CATH homology
 4E0Y A;  3SQI A;  4F43 A;  3T79 A;  2V6E A;  4E0P A;  4E0J A;  4E0G A;  4E0Z A;  4ACO A;  4F41 A;  4DWP A;  4E10 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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