4E10A

Protelomerase tela y201a covalently complexed with substrate dna
Total Genus 117
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
318
structure length
317
Chain Sequence
PKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMADEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRRPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSMTYTLPEDRDNALARL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Protelomerase
publication title An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
molecule tags Dna binding protein/dna
total genus 117
structure length 317
sequence length 318
ec nomenclature
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4e10A02
4E0JA 4E0YA 4E0PA 4E10A 4E0GA 4E0ZA 4F41A 4F43A 4DWPA 2V6EA
chains in the Genus database with same CATH superfamily
1P7DA 5DCFA 4E0JA 1P4EA 3SQIA 1M6XA 4E0PA 5CRXA 1XO0A 1PVPA 3NKHA 4CRXA 3UXUA 1AE9A 1KBUA 4E10A 1Q3VA 4E0ZA 4F41A 4DKSA 4ACOA 4F43A 1Z19A 4DWPA 2V6EA 2CRXA 5DORA 3CRXA 1XNSA 2HOIA 5C6KA 1F44A 3C28A 1A0PA 4E0YA 1PVQA 1OUQA 4E0GA 3MGVA 1CRXA 3VCFA 4A8EA 1Z1BA 1P4EC 1MA7A 1NZBA 1M6XC 2HOFA 3C29A 1PVRA 1DRGA 3T79A 1FLOA 2A3VA 1AIHA 1Q3UA
chains in the Genus database with same CATH topology
4E0JA 4E0YA 3SQIA 4E0PA 4E10A 4E0GA 4E0ZA 4F41A 4ACOA 4F43A 4DWPA 3T79A 2V6EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E0J A;  4E0Y A;  4E0P A;  4E10 A;  4E0G A;  4E0Z A;  4F41 A;  4F43 A;  4DWP A;  2V6E A; 
#chains in the Genus database with same CATH topology
 1P7D A;  5DCF A;  4E0J A;  1P4E A;  3SQI A;  1M6X A;  4E0P A;  5CRX A;  1XO0 A;  1PVP A;  3NKH A;  4CRX A;  3UXU A;  1AE9 A;  1KBU A;  4E10 A;  1Q3V A;  4E0Z A;  4F41 A;  4DKS A;  4ACO A;  4F43 A;  1Z19 A;  4DWP A;  2V6E A;  2CRX A;  5DOR A;  3CRX A;  1XNS A;  2HOI A;  5C6K A;  1F44 A;  3C28 A;  1A0P A;  4E0Y A;  1PVQ A;  1OUQ A;  4E0G A;  3MGV A;  1CRX A;  3VCF A;  4A8E A;  1Z1B A;  1P4E C;  1MA7 A;  1NZB A;  1M6X C;  2HOF A;  3C29 A;  1PVR A;  1DRG A;  3T79 A;  1FLO A;  2A3V A;  1AIH A;  1Q3U A; 
#chains in the Genus database with same CATH homology
 4E0J A;  4E0Y A;  3SQI A;  4E0P A;  4E10 A;  4E0G A;  4E0Z A;  4F41 A;  4ACO A;  4F43 A;  4DWP A;  3T79 A;  2V6E A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...