4E10A

Protelomerase tela y201a covalently complexed with substrate dna
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
318
structure length
317
Chain Sequence
PKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMADEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRRPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSMTYTLPEDRDNALARL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
molecule keywords Protelomerase
publication title An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
total genus 117
structure length 317
sequence length 318
ec nomenclature
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4e10A02
4F43A 4E0PA 4E0YA 4DWPA 4E0GA 2V6EA 4E0ZA 4E0JA 4E10A 4F41A
chains in the Genus database with same CATH superfamily
4F43A 1M6XC 5DCFA 4DWPA 2V6EA 3T79A 1A0PA 4A8EA 4ACOA 5C6KA 1PVQA 2CRXA 1PVPA 1CRXA 1Z1BA 3UXUA 3C28A 1F44A 4E0GA 1Z19A 3MGVA 4DKSA 1AIHA 3VCFA 4E0ZA 1P7DA 1AE9A 1Q3VA 1DRGA 1XNSA 1FLOA 1OUQA 3SQIA 2HOIA 3CRXA 4E0PA 4E0YA 4CRXA 2HOFA 1P4EC 1P4EA 1XO0A 4E0JA 1NZBA 5DORA 4F41A 2A3VA 5CRXA 1M6XA 1Q3UA 1PVRA 4E10A 3C29A 1MA7A 1KBUA 3NKHA
chains in the Genus database with same CATH topology
4F43A 4E0PA 4E0YA 4DWPA 4E0GA 2V6EA 4E0ZA 3T79A 4ACOA 4E0JA 4E10A 3SQIA 4F41A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F43 A;  4E0P A;  4E0Y A;  4DWP A;  4E0G A;  2V6E A;  4E0Z A;  4E0J A;  4E10 A;  4F41 A; 
#chains in the Genus database with same CATH topology
 4F43 A;  1M6X C;  5DCF A;  4DWP A;  2V6E A;  3T79 A;  1A0P A;  4A8E A;  4ACO A;  5C6K A;  1PVQ A;  2CRX A;  1PVP A;  1CRX A;  1Z1B A;  3UXU A;  3C28 A;  1F44 A;  4E0G A;  1Z19 A;  3MGV A;  4DKS A;  1AIH A;  3VCF A;  4E0Z A;  1P7D A;  1AE9 A;  1Q3V A;  1DRG A;  1XNS A;  1FLO A;  1OUQ A;  3SQI A;  2HOI A;  3CRX A;  4E0P A;  4E0Y A;  4CRX A;  2HOF A;  1P4E C;  1P4E A;  1XO0 A;  4E0J A;  1NZB A;  5DOR A;  4F41 A;  2A3V A;  5CRX A;  1M6X A;  1Q3U A;  1PVR A;  4E10 A;  3C29 A;  1MA7 A;  1KBU A;  3NKH A; 
#chains in the Genus database with same CATH homology
 4F43 A;  4E0P A;  4E0Y A;  4DWP A;  4E0G A;  2V6E A;  4E0Z A;  3T79 A;  4ACO A;  4E0J A;  4E10 A;  3SQI A;  4F41 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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