4E1TA

X-ray crystal structure of the transmembrane beta-domain from invasin from yersinia pseudotuberculosis
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
245
structure length
245
Chain Sequence
MNRFGTAQVNLNFDKNFSLKESSLDWLAPWYDSASFLFFSQLGIRNKDSRNTLNLGVGIRTLENGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGKLMYEQYTGERVALFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRFGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNIVLEYQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
source organism Yersinia pseudotuberculosis
publication title Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis.
pubmed doi rcsb
molecule keywords Invasin
total genus 70
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2012-03-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.160 Mainly Beta Beta Barrel Porin Porin 4e1tA00
4E1SA 5G26A 4E1TA
chains in the Genus database with same CATH superfamily
3LK2A 4K3CA 4RLBA 2IWVA 1ZHYA 3K19A 2ZFGA 4C4VB 3PORA 3SY7A 2F1TA 1MM4A 3TZGA 3LK3B 3HWBA 6PRNA 3A2SX 4IL6O 4D5UA 4D65A 5GV0A 4AUIA 2R89A 5PRNA 2WJRA 3PGSA 4XNKA 5DL8A 2R4NA 4PR7A 3RBHA 3WI5A 1HXUA 1HXTA 3NJTA 3VZUX 2JMMA 4D64A 1GFOA 2KZ7A 4QQ1A 5G26A 3SY9A 2O4VA 4LSEA 2YNKA 3AAAB 2N2LA 1H6S1 3LK41 4GF4A 3A0BO 1GFQA 3AA1A 3PRNA 4AYMC 2MHLA 2PORA 8PRNA 5E79O 3VZTX 1E54A 3AA0A 2W81C 4O49A 2M07A 4O3WA 7PRNA 2FGQX 2XG6A 2Y0KA 3POXA 4KR8A 4UB6O 4C69X 2QTKA 3SZDA 3BRYA 4FRTA 5DL5A 3VY9X 5ADXK 3UAQA 3SYSA 4N74A 4XNLA 5KAFO 5TISO 1QJ9A 3PF1A 2GE4A 1Q9GA 3LK2B 5FVNA 2Y2XA 2R88A 3NSGA 2XE2A 3PGRA 4BUMX 2R4OA 2R4PA 4FSPA 4C00A 5D5DA 4N75A 1ZHTA 2FGRA 4JCHA 1IZNB 2OMFA 1GFMA 5IYUA 3FYXA 2Y7SA 5G39A 1QJ8A 3UPGA 2YPVA 3T24A 3DZMA 4FRXA 2KZ7B 1BXWA 3O0EA 3UU2A 1PRNA 2X9KA 4PUXA 4AYDC 4O3YA 2LFUA 2Y0LA 4E1TA 3BS0A 2KXPA 3T0SA 4G76A 3AA1B 5ADXL 2LHFA 1ZHWA 2ERVA 3QRAA 5EE2A 3VZWX 4Z3TA 5AFUK 3AA7A 4RL9A 2N2MA 1YS5A 4JFBA 5AFUL 3G7GA 1P4TA 4LSIA 1GFPA 3DWOX 4RJWA 2R4LA 1OPFA 3AA6B 3POUA 4C4VA 2ODJA 1ZHZA 2XE1A 5H2FO 2XTRA 4KRAA 5JDPA 3WI4A 3WU2O 2XE3A 4FESA 4FMSA 4KR4A 2KDYA 1T16A 2K0LA 3HOLA 3VE2A 1BH3A 1G90A 2MNHA 4UB8O 4FUVA 2J1NA 3JCUO 2XTQA 3PQUA 4N58A 2J4UP 4U9CA 4AYEC 3AAEA 2IWWA 3DWNA 4AKRA 2K4TA 4FZMA 4G75A 4GCSA 4FT6A 4AZLA 5B66O 1Q9FA 1THQA 3A0HO 5B5EO 3PQSA 4FSOA 4AKMA 4AFKA 1MM5A 4B61A 3DA4A 5GTHO 3VE1A 3VY8X 2X27X 3SZVA 3V8UA 1BT9A 2KXPB 3EMNX 4LSHA 3KVDD 5G3AA 4AYID 3SYBA 3AA0B 3AA7B 5GTIO 4F4BA 2KC0A 3GP6A 4FOZA 1GFNA 2WJQA 4O3XB 1MPFA 2AXTO 2WVPA 5DL6A 4PJ0O 4N59A 3PGUA 4LSFA 3T20A 4AYNA 3LK3A 4FZNA 3HOEA 1QJPA 1PHOA 5T5FA 4CTDA 3KZIO 1IZNA 3POQA 4RJXA 2PRNA 4RLCA 2M06A 2XMXA 1ORMA 3JTYA 3LK42 4O4XA 4O3ZA 4GCQA 1HXXA 1T1LA 4FZLA 3AAEB 4AKRB 5KAIO 4E1SA 3AAAA 2ZLDA 2JQYA 3C5OA 1OSMA 4GCPA 3QRCA 5DL7A 2R8AA 1S5LO 3BRZA 4GHBA 4K3BA 3HW9A 2W80C 4O4UA 2XE5A 3DA3A 2F1CX 5G38A 3AA6A 2F1VA 4FQEA 2Y0HA 1ZHXA
chains in the Genus database with same CATH topology
3LK2A 4RLBA 1ZHYA 3K19A 2ZFGA 3PORA 3SY7A 2F1TA 1MM4A 3TZGA 3LK3B 3HWBA 6PRNA 3A2SX 4D5UA 4D65A 5GV0A 4AUIA 5PRNA 3RBHA 4XNKA 5DL8A 3WI5A 1HXUA 1HXTA 3VZUX 2JMMA 4D64A 1GFOA 2KZ7A 4QQ1A 5G26A 3SY9A 2O4VA 4LSEA 2YNKA 3AAAB 2N2LA 1H6S1 3LK41 4GF4A 1GFQA 3AA1A 3PRNA 4AYMC 2MHLA 2PORA 8PRNA 3VZTX 1E54A 3AA0A 2W81C 4O49A 2M07A 4O3WA 7PRNA 2FGQX 2XG6A 2Y0KA 3POXA 4KR8A 4C69X 2QTKA 3SZDA 4FRTA 3VY9X 5DL5A 5ADXK 3UAQA 3SYSA 4XNLA 1QJ9A 2GE4A 1Q9GA 3LK2B 5FVNA 2Y2XA 3NSGA 2XE2A 4BUMX 4FSPA 5D5DA 1ZHTA 2FGRA 4JCHA 1IZNB 2OMFA 1GFMA 5IYUA 3FYXA 2Y7SA 3UPGA 1QJ8A 2YPVA 3T24A 4FRXA 2KZ7B 1BXWA 3O0EA 3UU2A 1PRNA 4PUXA 4AYDC 4O3YA 2LFUA 2Y0LA 4E1TA 3T0SA 2KXPA 4G76A 3AA1B 5ADXL 2LHFA 1ZHWA 2ERVA 3QRAA 5EE2A 3VZWX 4Z3TA 3AA7A 4RL9A 2N2MA 1YS5A 4JFBA 5AFUL 3G7GA 1P4TA 4LSIA 1GFPA 4RJWA 3AA6B 1OPFA 3POUA 2ODJA 1ZHZA 2XE1A 2XTRA 4KRAA 5JDPA 3WI4A 2XE3A 4FESA 4FMSA 4KR4A 2KDYA 2K0LA 5AFUK 3HOLA 3VE2A 1BH3A 1G90A 2MNHA 4FUVA 2J1NA 4N58A 2XTQA 3PQUA 2J4UP 4U9CA 4AYEC 3AAEA 4AKRA 2K4TA 4FZMA 4G75A 4GCSA 4FT6A 4AZLA 1Q9FA 1THQA 3PQSA 4FSOA 4AKMA 4AFKA 1MM5A 4B61A 3DA4A 3VE1A 3VY8X 2X27X 3SZVA 3V8UA 1BT9A 2KXPB 3EMNX 4LSHA 3KVDD 4AYID 3SYBA 3AA0B 3AA7B 4F4BA 2KC0A 3GP6A 4FOZA 1GFNA 4O3XB 1MPFA 5DL6A 4N59A 4LSFA 3T20A 4AYNA 3LK3A 4FZNA 3HOEA 1QJPA 1PHOA 5T5FA 1IZNA 3POQA 4RJXA 2PRNA 4RLCA 2M06A 2XMXA 1ORMA 3JTYA 3LK42 4O4XA 4O3ZA 4GCQA 1HXXA 4FZLA 3AAEB 4AKRB 4E1SA 3AAAA 2ZLDA 3C5OA 1OSMA 4GCPA 3QRCA 5DL7A 4GHBA 3HW9A 2W80C 4O4UA 2XE5A 3DA3A 3AA6A 2F1VA 2Y0HA 1ZHXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1S A;  5G26 A;  4E1T A; 
#chains in the Genus database with same CATH topology
 3LK2 A;  4K3C A;  4RLB A;  2IWV A;  1ZHY A;  3K19 A;  2ZFG A;  4C4V B;  3POR A;  3SY7 A;  2F1T A;  1MM4 A;  3TZG A;  3LK3 B;  3HWB A;  6PRN A;  3A2S X;  4IL6 O;  4D5U A;  4D65 A;  5GV0 A;  4AUI A;  2R89 A;  5PRN A;  2WJR A;  3PGS A;  4XNK A;  5DL8 A;  2R4N A;  4PR7 A;  3RBH A;  3WI5 A;  1HXU A;  1HXT A;  3NJT A;  3VZU X;  2JMM A;  4D64 A;  1GFO A;  2KZ7 A;  4QQ1 A;  5G26 A;  3SY9 A;  2O4V A;  4LSE A;  2YNK A;  3AAA B;  2N2L A;  1H6S 1;  3LK4 1;  4GF4 A;  3A0B O;  1GFQ A;  3AA1 A;  3PRN A;  4AYM C;  2MHL A;  2POR A;  8PRN A;  5E79 O;  3VZT X;  1E54 A;  3AA0 A;  2W81 C;  4O49 A;  2M07 A;  4O3W A;  7PRN A;  2FGQ X;  2XG6 A;  2Y0K A;  3POX A;  4KR8 A;  4UB6 O;  4C69 X;  2QTK A;  3SZD A;  3BRY A;  4FRT A;  5DL5 A;  3VY9 X;  5ADX K;  3UAQ A;  3SYS A;  4N74 A;  4XNL A;  5KAF O;  5TIS O;  1QJ9 A;  3PF1 A;  2GE4 A;  1Q9G A;  3LK2 B;  5FVN A;  2Y2X A;  2R88 A;  3NSG A;  2XE2 A;  3PGR A;  4BUM X;  2R4O A;  2R4P A;  4FSP A;  4C00 A;  5D5D A;  4N75 A;  1ZHT A;  2FGR A;  4JCH A;  1IZN B;  2OMF A;  1GFM A;  5IYU A;  3FYX A;  2Y7S A;  5G39 A;  1QJ8 A;  3UPG A;  2YPV A;  3T24 A;  3DZM A;  4FRX A;  2KZ7 B;  1BXW A;  3O0E A;  3UU2 A;  1PRN A;  2X9K A;  4PUX A;  4AYD C;  4O3Y A;  2LFU A;  2Y0L A;  4E1T A;  3BS0 A;  2KXP A;  3T0S A;  4G76 A;  3AA1 B;  5ADX L;  2LHF A;  1ZHW A;  2ERV A;  3QRA A;  5EE2 A;  3VZW X;  4Z3T A;  5AFU K;  3AA7 A;  4RL9 A;  2N2M A;  1YS5 A;  4JFB A;  5AFU L;  3G7G A;  1P4T A;  4LSI A;  1GFP A;  3DWO X;  4RJW A;  2R4L A;  1OPF A;  3AA6 B;  3POU A;  4C4V A;  2ODJ A;  1ZHZ A;  2XE1 A;  5H2F O;  2XTR A;  4KRA A;  5JDP A;  3WI4 A;  3WU2 O;  2XE3 A;  4FES A;  4FMS A;  4KR4 A;  2KDY A;  1T16 A;  2K0L A;  3HOL A;  3VE2 A;  1BH3 A;  1G90 A;  2MNH A;  4UB8 O;  4FUV A;  2J1N A;  3JCU O;  2XTQ A;  3PQU A;  4N58 A;  2J4U P;  4U9C A;  4AYE C;  3AAE A;  2IWW A;  3DWN A;  4AKR A;  2K4T A;  4FZM A;  4G75 A;  4GCS A;  4FT6 A;  4AZL A;  5B66 O;  1Q9F A;  1THQ A;  3A0H O;  5B5E O;  3PQS A;  4FSO A;  4AKM A;  4AFK A;  1MM5 A;  4B61 A;  3DA4 A;  5GTH O;  3VE1 A;  3VY8 X;  2X27 X;  3SZV A;  3V8U A;  1BT9 A;  2KXP B;  3EMN X;  4LSH A;  3KVD D;  5G3A A;  4AYI D;  3SYB A;  3AA0 B;  3AA7 B;  5GTI O;  4F4B A;  2KC0 A;  3GP6 A;  4FOZ A;  1GFN A;  2WJQ A;  4O3X B;  1MPF A;  2AXT O;  2WVP A;  5DL6 A;  4PJ0 O;  4N59 A;  3PGU A;  4LSF A;  3T20 A;  4AYN A;  3LK3 A;  4FZN A;  3HOE A;  1QJP A;  1PHO A;  5T5F A;  4CTD A;  3KZI O;  1IZN A;  3POQ A;  4RJX A;  2PRN A;  4RLC A;  2M06 A;  2XMX A;  1ORM A;  3JTY A;  3LK4 2;  4O4X A;  4O3Z A;  4GCQ A;  1HXX A;  1T1L A;  4FZL A;  3AAE B;  4AKR B;  5KAI O;  4E1S A;  3AAA A;  2ZLD A;  2JQY A;  3C5O A;  1OSM A;  4GCP A;  3QRC A;  5DL7 A;  2R8A A;  1S5L O;  3BRZ A;  4GHB A;  4K3B A;  3HW9 A;  2W80 C;  4O4U A;  2XE5 A;  3DA3 A;  2F1C X;  5G38 A;  3AA6 A;  2F1V A;  4FQE A;  2Y0H A;  1ZHX A; 
#chains in the Genus database with same CATH homology
 3LK2 A;  4RLB A;  1ZHY A;  3K19 A;  2ZFG A;  3POR A;  3SY7 A;  2F1T A;  1MM4 A;  3TZG A;  3LK3 B;  3HWB A;  6PRN A;  3A2S X;  4D5U A;  4D65 A;  5GV0 A;  4AUI A;  5PRN A;  3RBH A;  4XNK A;  5DL8 A;  3WI5 A;  1HXU A;  1HXT A;  3VZU X;  2JMM A;  4D64 A;  1GFO A;  2KZ7 A;  4QQ1 A;  5G26 A;  3SY9 A;  2O4V A;  4LSE A;  2YNK A;  3AAA B;  2N2L A;  1H6S 1;  3LK4 1;  4GF4 A;  1GFQ A;  3AA1 A;  3PRN A;  4AYM C;  2MHL A;  2POR A;  8PRN A;  3VZT X;  1E54 A;  3AA0 A;  2W81 C;  4O49 A;  2M07 A;  4O3W A;  7PRN A;  2FGQ X;  2XG6 A;  2Y0K A;  3POX A;  4KR8 A;  4C69 X;  2QTK A;  3SZD A;  4FRT A;  3VY9 X;  5DL5 A;  5ADX K;  3UAQ A;  3SYS A;  4XNL A;  1QJ9 A;  2GE4 A;  1Q9G A;  3LK2 B;  5FVN A;  2Y2X A;  3NSG A;  2XE2 A;  4BUM X;  4FSP A;  5D5D A;  1ZHT A;  2FGR A;  4JCH A;  1IZN B;  2OMF A;  1GFM A;  5IYU A;  3FYX A;  2Y7S A;  3UPG A;  1QJ8 A;  2YPV A;  3T24 A;  4FRX A;  2KZ7 B;  1BXW A;  3O0E A;  3UU2 A;  1PRN A;  4PUX A;  4AYD C;  4O3Y A;  2LFU A;  2Y0L A;  4E1T A;  3T0S A;  2KXP A;  4G76 A;  3AA1 B;  5ADX L;  2LHF A;  1ZHW A;  2ERV A;  3QRA A;  5EE2 A;  3VZW X;  4Z3T A;  3AA7 A;  4RL9 A;  2N2M A;  1YS5 A;  4JFB A;  5AFU L;  3G7G A;  1P4T A;  4LSI A;  1GFP A;  4RJW A;  3AA6 B;  1OPF A;  3POU A;  2ODJ A;  1ZHZ A;  2XE1 A;  2XTR A;  4KRA A;  5JDP A;  3WI4 A;  2XE3 A;  4FES A;  4FMS A;  4KR4 A;  2KDY A;  2K0L A;  5AFU K;  3HOL A;  3VE2 A;  1BH3 A;  1G90 A;  2MNH A;  4FUV A;  2J1N A;  4N58 A;  2XTQ A;  3PQU A;  2J4U P;  4U9C A;  4AYE C;  3AAE A;  4AKR A;  2K4T A;  4FZM A;  4G75 A;  4GCS A;  4FT6 A;  4AZL A;  1Q9F A;  1THQ A;  3PQS A;  4FSO A;  4AKM A;  4AFK A;  1MM5 A;  4B61 A;  3DA4 A;  3VE1 A;  3VY8 X;  2X27 X;  3SZV A;  3V8U A;  1BT9 A;  2KXP B;  3EMN X;  4LSH A;  3KVD D;  4AYI D;  3SYB A;  3AA0 B;  3AA7 B;  4F4B A;  2KC0 A;  3GP6 A;  4FOZ A;  1GFN A;  4O3X B;  1MPF A;  5DL6 A;  4N59 A;  4LSF A;  3T20 A;  4AYN A;  3LK3 A;  4FZN A;  3HOE A;  1QJP A;  1PHO A;  5T5F A;  1IZN A;  3POQ A;  4RJX A;  2PRN A;  4RLC A;  2M06 A;  2XMX A;  1ORM A;  3JTY A;  3LK4 2;  4O4X A;  4O3Z A;  4GCQ A;  1HXX A;  4FZL A;  3AAE B;  4AKR B;  4E1S A;  3AAA A;  2ZLD A;  3C5O A;  1OSM A;  4GCP A;  3QRC A;  5DL7 A;  4GHB A;  3HW9 A;  2W80 C;  4O4U A;  2XE5 A;  3DA3 A;  3AA6 A;  2F1V A;  2Y0H A;  1ZHX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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