4E2TA

Crystal structures of rada intein from pyrococcus horikoshii
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
172
structure length
172
Chain Sequence
AFARDTEVYYENDTVPHMESIEEMYSKYASMNGELPFDNGYAVPLDNVFVYTLDIASGEIKKTRASYIYREKVEKLIEIKLSSGYSLKVTPSHPVLLFRDGLQWVPAAEVKPGDVVVGVREEVLRRRIISKGELEFHEVSSVRIIDYNNWVYDLVIPETHNFIAPNGLVLHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Pho radA intein
publication title NMR and Crystal Structures of the Pyrococcus horikoshii RadA Intein Guide a Strategy for Engineering a Highly Efficient and Promiscuous Intein.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 42
structure length 172
sequence length 172
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 4e2tA00
1JVAA 1DQ3A 3IFJA 2JMZA 1UM2A 2KEQA 2CW8A 2L8LA 2LCJA 2LWYA 4KL6A 4KL5A 1DFAA 3NZMA 4E2TA 4E2UA 1AT0A 1LWTA 4GIGA 1EF0A 1VDEA 1LWSA 1GPPA 2JNQA 1AM2A 1ZDEA 2IN9A 3IGDA 5I0AA 2CW7A 2IN8A 4O1SA 2IN0A 4O1RA 2LQMA 4OZ6A 2IMZA 1ZD7A 5K08A 1MI8A
chains in the Genus database with same CATH superfamily
1JVAA 1DQ3A 3IFJA 2JMZA 1UM2A 2KEQA 2CW8A 2L8LA 2LCJA 2LWYA 4KL6A 4QFQA 4KL5A 1DFAA 3NZMA 4E2TA 4E2UA 1AT0A 1LWTA 4GIGA 1EF0A 1VDEA 1LWSA 1GPPA 2JNQA 1AM2A 1ZDEA 2IN9A 3IGDA 5I0AA 2CW7A 2IN8A 4O1SA 2IN0A 4O1RA 2LQMA 4OZ6A 2IMZA 4LX3A 1ZD7A 5K08A 1MI8A
chains in the Genus database with same CATH topology
1JVAA 1DQ3A 3IFJA 2JMZA 1UM2A 2KEQA 2CW8A 2L8LA 2LCJA 2LWYA 4KL6A 4KL5A 1DFAA 3NZMA 4E2TA 4E2UA 1AT0A 1LWTA 4GIGA 1EF0A 1VDEA 1LWSA 1GPPA 2JNQA 1AM2A 1ZDEA 2IN9A 3IGDA 5I0AA 2CW7A 2IN8A 4O1SA 2IN0A 4O1RA 2LQMA 4OZ6A 2IMZA 1ZD7A 5K08A 1MI8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JVA A;  1DQ3 A;  3IFJ A;  2JMZ A;  1UM2 A;  2KEQ A;  2CW8 A;  2L8L A;  2LCJ A;  2LWY A;  4KL6 A;  4KL5 A;  1DFA A;  3NZM A;  4E2T A;  4E2U A;  1AT0 A;  1LWT A;  4GIG A;  1EF0 A;  1VDE A;  1LWS A;  1GPP A;  2JNQ A;  1AM2 A;  1ZDE A;  2IN9 A;  3IGD A;  5I0A A;  2CW7 A;  2IN8 A;  4O1S A;  2IN0 A;  4O1R A;  2LQM A;  4OZ6 A;  2IMZ A;  1ZD7 A;  5K08 A;  1MI8 A; 
#chains in the Genus database with same CATH topology
 1JVA A;  1DQ3 A;  3IFJ A;  2JMZ A;  1UM2 A;  2KEQ A;  2CW8 A;  2L8L A;  2LCJ A;  2LWY A;  4KL6 A;  4QFQ A;  4KL5 A;  1DFA A;  3NZM A;  4E2T A;  4E2U A;  1AT0 A;  1LWT A;  4GIG A;  1EF0 A;  1VDE A;  1LWS A;  1GPP A;  2JNQ A;  1AM2 A;  1ZDE A;  2IN9 A;  3IGD A;  5I0A A;  2CW7 A;  2IN8 A;  4O1S A;  2IN0 A;  4O1R A;  2LQM A;  4OZ6 A;  2IMZ A;  4LX3 A;  1ZD7 A;  5K08 A;  1MI8 A; 
#chains in the Genus database with same CATH homology
 1JVA A;  1DQ3 A;  3IFJ A;  2JMZ A;  1UM2 A;  2KEQ A;  2CW8 A;  2L8L A;  2LCJ A;  2LWY A;  4KL6 A;  4KL5 A;  1DFA A;  3NZM A;  4E2T A;  4E2U A;  1AT0 A;  1LWT A;  4GIG A;  1EF0 A;  1VDE A;  1LWS A;  1GPP A;  2JNQ A;  1AM2 A;  1ZDE A;  2IN9 A;  3IGD A;  5I0A A;  2CW7 A;  2IN8 A;  4O1S A;  2IN0 A;  4O1R A;  2LQM A;  4OZ6 A;  2IMZ A;  1ZD7 A;  5K08 A;  1MI8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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