4E5FA

Crystal structure of avian influenza virus pan bound to compound 1
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
180
structure length
180
Chain Sequence
MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRTMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHTYYLEKANKIKSEETHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein, transcription
source organism Influenza a virus
publication title Structural and Biochemical Basis for Development of Influenza Virus Inhibitors Targeting the PA Endonuclease.
pubmed doi rcsb
molecule keywords Polymerase protein PA
total genus 67
structure length 180
sequence length 180
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 4e5fA00
4NFZA 4E5EA 4E5FA 4ZI0A 4AWMA 4AVLA 5D8UA 4CHCA 3HW5A 5FDDA 5D42A 3HW6A 5D9JA 4E5GA 4E5JA 5I13A 4E5HA 4AWKA 5D2OA 4E5IA 4AVQA 4AWHA 5DESA 3EBJA 4CGXA 4AWGA 3HW3A 5DBSA 3HW4A 4AWFA 5CGVA 5FDGA 5JHTA 5D4GA 4YYLA 5EGAA 5DEBA 5CL0A 5CCYA 5JHVA 4ZQQA 4ZHZA 4CGSA 4AVGA 4E5LA 5CZNA
chains in the Genus database with same CATH superfamily
1DC1A 3DVOA 4F0PA 2EWFA 2GB7A 4CHCA 1D2IA 5I13A 2XI7A 3WVKA 1M0IA 4AWHA 1VRRA 3EBJA 2XI5A 4CGXA 1BHMA 5DBSA 3WVIA 4AWFA 1ESGA 5CGVA 1FOKA 1FZRA 1DFMA 3A4KA 4OC8A 4E5EA 3DPGA 4E5FA 2BAMA 3CAEA 5D9JA 4E5GA 3N78A 3MQYA 2P0JA 1SDOA 3HW3A 5DEBA 4ZQQA 4R28A 4E5LA 4AVGA 1ES8A 2FOKA 4NFZA 3WVHA 3HW5A 5FDDA 4E5HA 2FQZA 4AWKA 1CFRA 5D2OA 4E5IA 4AVQA 5DESA 3MQ6A 3BM3A 3HW4A 3N7BA 4F0QA 5FDGA 4YYLA 5EGAA 5CL0A 5CCYA 2P14A 3V21A 3BAMA 5CZNA 1BAMA 3V20A 3ODHA 4ZI0A 4AWMA 4AVLA 3WVGA 5D8UA 3WVPA 1M0DA 3DW9A 5D42A 3HW6A 4E5JA 2PFJA 4AWGA 5JHTA 5D4GA 5JHVA 3V1ZA 2E52A 4ZHZA 1KNVA 4CGSA
chains in the Genus database with same CATH topology
1DC1A 3DVOA 4F0PA 2EWFA 2GB7A 4CHCA 1D2IA 5I13A 2XI7A 3WVKA 1M0IA 4AWHA 1VRRA 3EBJA 2XI5A 4CGXA 1BHMA 5DBSA 3WVIA 4AWFA 1ESGA 5CGVA 1FOKA 1FZRA 1DFMA 3A4KA 4OC8A 4E5EA 3DPGA 4E5FA 2BAMA 3CAEA 5D9JA 4E5GA 3N78A 3MQYA 2P0JA 1SDOA 3HW3A 5DEBA 4ZQQA 4R28A 4E5LA 4AVGA 1ES8A 2FOKA 4NFZA 3WVHA 3HW5A 5FDDA 4E5HA 2FQZA 4AWKA 1CFRA 5D2OA 4E5IA 4AVQA 5DESA 3MQ6A 3BM3A 3HW4A 3N7BA 4F0QA 5FDGA 4YYLA 5EGAA 5CL0A 5CCYA 2P14A 3V21A 3BAMA 5CZNA 1BAMA 3V20A 3ODHA 4ZI0A 4AWMA 4AVLA 3WVGA 5D8UA 3WVPA 1M0DA 3DW9A 5D42A 3HW6A 4E5JA 2PFJA 4AWGA 5JHTA 5D4GA 5JHVA 3V1ZA 2E52A 4ZHZA 1KNVA 4CGSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NFZ A;  4E5E A;  4E5F A;  4ZI0 A;  4AWM A;  4AVL A;  5D8U A;  4CHC A;  3HW5 A;  5FDD A;  5D42 A;  3HW6 A;  5D9J A;  4E5G A;  4E5J A;  5I13 A;  4E5H A;  4AWK A;  5D2O A;  4E5I A;  4AVQ A;  4AWH A;  5DES A;  3EBJ A;  4CGX A;  4AWG A;  3HW3 A;  5DBS A;  3HW4 A;  4AWF A;  5CGV A;  5FDG A;  5JHT A;  5D4G A;  4YYL A;  5EGA A;  5DEB A;  5CL0 A;  5CCY A;  5JHV A;  4ZQQ A;  4ZHZ A;  4CGS A;  4AVG A;  4E5L A;  5CZN A; 
#chains in the Genus database with same CATH topology
 1DC1 A;  3DVO A;  4F0P A;  2EWF A;  2GB7 A;  4CHC A;  1D2I A;  5I13 A;  2XI7 A;  3WVK A;  1M0I A;  4AWH A;  1VRR A;  3EBJ A;  2XI5 A;  4CGX A;  1BHM A;  5DBS A;  3WVI A;  4AWF A;  1ESG A;  5CGV A;  1FOK A;  1FZR A;  1DFM A;  3A4K A;  4OC8 A;  4E5E A;  3DPG A;  4E5F A;  2BAM A;  3CAE A;  5D9J A;  4E5G A;  3N78 A;  3MQY A;  2P0J A;  1SDO A;  3HW3 A;  5DEB A;  4ZQQ A;  4R28 A;  4E5L A;  4AVG A;  1ES8 A;  2FOK A;  4NFZ A;  3WVH A;  3HW5 A;  5FDD A;  4E5H A;  2FQZ A;  4AWK A;  1CFR A;  5D2O A;  4E5I A;  4AVQ A;  5DES A;  3MQ6 A;  3BM3 A;  3HW4 A;  3N7B A;  4F0Q A;  5FDG A;  4YYL A;  5EGA A;  5CL0 A;  5CCY A;  2P14 A;  3V21 A;  3BAM A;  5CZN A;  1BAM A;  3V20 A;  3ODH A;  4ZI0 A;  4AWM A;  4AVL A;  3WVG A;  5D8U A;  3WVP A;  1M0D A;  3DW9 A;  5D42 A;  3HW6 A;  4E5J A;  2PFJ A;  4AWG A;  5JHT A;  5D4G A;  5JHV A;  3V1Z A;  2E52 A;  4ZHZ A;  1KNV A;  4CGS A; 
#chains in the Genus database with same CATH homology
 1DC1 A;  3DVO A;  4F0P A;  2EWF A;  2GB7 A;  4CHC A;  1D2I A;  5I13 A;  2XI7 A;  3WVK A;  1M0I A;  4AWH A;  1VRR A;  3EBJ A;  2XI5 A;  4CGX A;  1BHM A;  5DBS A;  3WVI A;  4AWF A;  1ESG A;  5CGV A;  1FOK A;  1FZR A;  1DFM A;  3A4K A;  4OC8 A;  4E5E A;  3DPG A;  4E5F A;  2BAM A;  3CAE A;  5D9J A;  4E5G A;  3N78 A;  3MQY A;  2P0J A;  1SDO A;  3HW3 A;  5DEB A;  4ZQQ A;  4R28 A;  4E5L A;  4AVG A;  1ES8 A;  2FOK A;  4NFZ A;  3WVH A;  3HW5 A;  5FDD A;  4E5H A;  2FQZ A;  4AWK A;  1CFR A;  5D2O A;  4E5I A;  4AVQ A;  5DES A;  3MQ6 A;  3BM3 A;  3HW4 A;  3N7B A;  4F0Q A;  5FDG A;  4YYL A;  5EGA A;  5CL0 A;  5CCY A;  2P14 A;  3V21 A;  3BAM A;  5CZN A;  1BAM A;  3V20 A;  3ODH A;  4ZI0 A;  4AWM A;  4AVL A;  3WVG A;  5D8U A;  3WVP A;  1M0D A;  3DW9 A;  5D42 A;  3HW6 A;  4E5J A;  2PFJ A;  4AWG A;  5JHT A;  5D4G A;  5JHV A;  3V1Z A;  2E52 A;  4ZHZ A;  1KNV A;  4CGS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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