4EADA

Thymidine phosphorylase from e.coli with 3'-azido-2'-fluoro-dideoxyuridine
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
440
structure length
440
Chain Sequence
LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENNWQEAAKAVKAAIKLADKAPESTPTVYRRISE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transferase inhibitor
molecule keywords Thymidine phosphorylase
publication title Thymidine phosphorylase from E.coli with 3'-azido-2'-fluoro-dideoxyuridine
rcsb
source organism Escherichia coli
total genus 157
structure length 440
sequence length 440
ec nomenclature ec 2.4.2.4: Thymidine phosphorylase.
pdb deposition date 2012-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 4eadA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 4eadA02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 4eadA03
3GBRA 4OWNA 3QR9A 4X46A 5C7SA 4GA5A 3QSAA 4OWMA 4YI7A 4N5VA 4EADA 1ZVWA 4XR5A 4LHMA 1VQUA 4ZOKA 5BNEA 5BO2A 4IJ1A 4YYYA 2ELCA 3QQSA 3TWPA 2DSJA 4X59A 4N93A 4OWSA 3H5QA 2J0FA 4GIUA 1KHDA 4GTNA 2GVQA 4X5DA 4M0RA 4OWVA 4OWQA 1GXBA 4MUOA 4GKMA 5BO3A 5C1RA 4ZTVA 1O17A 3R88A 4X5CA 1OTPA 5EY3A 4X58A 1UOUA 3UU1A 4X5EA 4GA4A 1ZXYA 5EP8A 2BPQA 2TPTA 4EAFA 4ZOFA 4OWUA 2WK6A 4X5AA 4OWOA 4HKMA 1BRWA 4YEKA 1V8GA 2WK5A 3R6CA 1AZYA 4ZOJA 4GA6A 1ZYKA 5C2LA 3QS8A 1KGZA 5BYTA 4N8QA 4X5BA
chains in the Genus database with same CATH superfamily
3RPFA 3GBRA 1FMAE 1NVJA 3CC4H 3WO1A 3CCQH 3CC7H 5GADN 4OWNA 2B7QA 1VDVA 5JVHJ 1QPQA 2ZJRJ 5AYXA 3QR9A 4X46A 2E3TA 5AN9F 3L0GA 1Y69K 1QVGH 1VQ7H 4U67J 5C7SA 1ZXIB 3C2OA 3NVWC 4GA5A 3CMEH 3G71H 3C2RA 3CCVH 3QSAA 4OWMA 2QA4H 1NJIJ 1YTEA 1FIQC 2QIEA 4USAA 3G4SH 4YI7A 1M1KJ 4IOAJ 4N5VA 4WFAJ 3NVZC 1YJWH 4EADA 1S72H 1Q82J 1Q7YJ 1ZVWA 1YJ9H 4XR5A 1KQSH 4LHMA 3I55H 1VQUA 4ZOKA 5BNEA 1FFVB 1QPNA 3EUB4 4WF9J 4UY8M 1VQOH 1VQ5H 5GAGN 3FAHA 1WKIA 4C80A 1YTKA 1VQPH 5BO2A 4IJ1A 4WFBJ 1QPRA 1SB3A 1V97A 2B7NA 5GAHN 4F3FC 4YYYA 5HULA 1VQLH 1N8RJ 2ELCA 2QEXH 3QQSA 3TWPA 4US8A 2DSJA 4X59A 1SIJA 4WFNJ 3L4PA 4N93A 4OWSA 1N62B 3H5QA 1RM6A 2J0FA 1YTDA 1YITH 3I56H 4GIUA 1FM0E 3AMZA 5DM6J 1KHDA 3B9JC 4GTNA 2WP4A 3PAJA 5MPOC 5HUOA 3NRZC 1RF8B 3WO0A 4KWVA 4C7ZA 3CCRH 2W54B 5AYZA 2GVQA 4AP8A 4X5DA 1RRZA 2OTLH 4M0RA 4OWVA 4OWQA 2Q5WE 1M90J 1VQMH 1QPOA 1VQKH 3CCJH 1FO4A 3CCUH 1GXBA 1YI2H 4MUOA 1YIJH 2W55B 3CXCH 1N5WB 1VQ4H 4GKMA 5BO3A 1NVIE 5C1RA 3CCMH 2I14A 5GAEN 1VQ8H 3NVYC 1N63B 3AN1A 3TQVA 3AM9A 2JBMA 2OMDA 4ZTVA 1K8AJ 3ETRC 2B7PA 3OW2H 1O17A 3R88A 4X5CA 4KWWA 3GNNA 1OTPA 3VMMA 4WCEJ 1O4UA 1K9MJ 1QVFH 5EY3A 2W3RB 3PIPJ 1KC8J 4X58A 1N60B 1UOUA 2ZJQJ 3BIIE 1WYGA 3UU1A 4X5EA 1VQ6H 1Q81J 4GA4A 3CC2H 3DLLJ 1FFUB 5HL7J 1YHQH 1JRPB 4US9A 1N61B 3CCLH 3CCSH 1ZXYA 2OTJH 5EP8A 4I9AA 2BPQA 2TPTA 4EAFA 3C2VA 3CF5J 4ZOFA 4OWUA 2WK6A 4X5AA 3FC4A 4OWOA 5DM7J 3CCEH 4HKMA 1BRWA 4YEKA 1K73J 1JJ2H 4C7YA 3WNZA 1V8GA 3SR6C 3CMAH 2WK5A 3R6CA 3PIOJ 2ZJPJ 1Q86J 3G6EH 1AZYA 4ZOJA 4IOCJ 1W2BH 4GA6A 2PA2A 1DGJA 4IO9J 3CD6H 1ZYKA 1VQNH 1VLBA 3C2FA 3NVVC 5C2LA 3QS8A 5JVGJ 1VQ9H 5MLCO 4ZOHA 3CPWH 3J7ZM 1KGZA 2I1OA 5BYTA 4N8QA 5AYYA 1YJNH 3NS1C 5HUPA 1QAPA 1JROB 3C2EA 1N5XA 1X1OA 4X5BA 5H1SO 1KD1J 2W3SB
chains in the Genus database with same CATH topology
3GBRA 4OWNA 3QR9A 4X46A 5C7SA 4GA5A 3QSAA 4OWMA 4YI7A 4N5VA 4EADA 1ZVWA 4XR5A 4LHMA 1VQUA 4ZOKA 5BNEA 5BO2A 4IJ1A 4YYYA 2ELCA 3QQSA 3TWPA 2DSJA 4X59A 4N93A 4OWSA 3H5QA 2J0FA 4GIUA 1KHDA 4GTNA 2GVQA 4X5DA 4M0RA 4OWVA 4OWQA 1GXBA 4MUOA 4GKMA 5BO3A 5C1RA 4ZTVA 1O17A 3R88A 4X5CA 1OTPA 5EY3A 4X58A 1UOUA 3UU1A 4X5EA 4GA4A 1ZXYA 5EP8A 2BPQA 2TPTA 4EAFA 4ZOFA 4OWUA 2WK6A 4X5AA 4OWOA 4HKMA 1BRWA 4YEKA 1V8GA 2WK5A 3R6CA 1AZYA 4ZOJA 4GA6A 1ZYKA 5C2LA 3QS8A 1KGZA 5BYTA 4N8QA 4X5BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GBR A;  4OWN A;  3QR9 A;  4X46 A;  5C7S A;  4GA5 A;  3QSA A;  4OWM A;  4YI7 A;  4N5V A;  4EAD A;  1ZVW A;  4XR5 A;  4LHM A;  1VQU A;  4ZOK A;  5BNE A;  5BO2 A;  4IJ1 A;  4YYY A;  2ELC A;  3QQS A;  3TWP A;  2DSJ A;  4X59 A;  4N93 A;  4OWS A;  3H5Q A;  2J0F A;  4GIU A;  1KHD A;  4GTN A;  2GVQ A;  4X5D A;  4M0R A;  4OWV A;  4OWQ A;  1GXB A;  4MUO A;  4GKM A;  5BO3 A;  5C1R A;  4ZTV A;  1O17 A;  3R88 A;  4X5C A;  1OTP A;  5EY3 A;  4X58 A;  1UOU A;  3UU1 A;  4X5E A;  4GA4 A;  1ZXY A;  5EP8 A;  2BPQ A;  2TPT A;  4EAF A;  4ZOF A;  4OWU A;  2WK6 A;  4X5A A;  4OWO A;  4HKM A;  1BRW A;  4YEK A;  1V8G A;  2WK5 A;  3R6C A;  1AZY A;  4ZOJ A;  4GA6 A;  1ZYK A;  5C2L A;  3QS8 A;  1KGZ A;  5BYT A;  4N8Q A;  4X5B A; 
#chains in the Genus database with same CATH topology
 3RPF A;  3GBR A;  1FMA E;  1NVJ A;  3CC4 H;  3WO1 A;  3CCQ H;  3CC7 H;  5GAD N;  4OWN A;  2B7Q A;  1VDV A;  5JVH J;  1QPQ A;  2ZJR J;  5AYX A;  3QR9 A;  4X46 A;  2E3T A;  5AN9 F;  3L0G A;  1Y69 K;  1QVG H;  1VQ7 H;  4U67 J;  5C7S A;  1ZXI B;  3C2O A;  3NVW C;  4GA5 A;  3CME H;  3G71 H;  3C2R A;  3CCV H;  3QSA A;  4OWM A;  2QA4 H;  1NJI J;  1YTE A;  1FIQ C;  2QIE A;  4USA A;  3G4S H;  4YI7 A;  1M1K J;  4IOA J;  4N5V A;  4WFA J;  3NVZ C;  1YJW H;  4EAD A;  1S72 H;  1Q82 J;  1Q7Y J;  1ZVW A;  1YJ9 H;  4XR5 A;  1KQS H;  4LHM A;  3I55 H;  1VQU A;  4ZOK A;  5BNE A;  1FFV B;  1QPN A;  3EUB 4;  4WF9 J;  4UY8 M;  1VQO H;  1VQ5 H;  5GAG N;  3FAH A;  1WKI A;  4C80 A;  1YTK A;  1VQP H;  5BO2 A;  4IJ1 A;  4WFB J;  1QPR A;  1SB3 A;  1V97 A;  2B7N A;  5GAH N;  4F3F C;  4YYY A;  5HUL A;  1VQL H;  1N8R J;  2ELC A;  2QEX H;  3QQS A;  3TWP A;  4US8 A;  2DSJ A;  4X59 A;  1SIJ A;  4WFN J;  3L4P A;  4N93 A;  4OWS A;  1N62 B;  3H5Q A;  1RM6 A;  2J0F A;  1YTD A;  1YIT H;  3I56 H;  4GIU A;  1FM0 E;  3AMZ A;  5DM6 J;  1KHD A;  3B9J C;  4GTN A;  2WP4 A;  3PAJ A;  5MPO C;  5HUO A;  3NRZ C;  1RF8 B;  3WO0 A;  4KWV A;  4C7Z A;  3CCR H;  2W54 B;  5AYZ A;  2GVQ A;  4AP8 A;  4X5D A;  1RRZ A;  2OTL H;  4M0R A;  4OWV A;  4OWQ A;  2Q5W E;  1M90 J;  1VQM H;  1QPO A;  1VQK H;  3CCJ H;  1FO4 A;  3CCU H;  1GXB A;  1YI2 H;  4MUO A;  1YIJ H;  2W55 B;  3CXC H;  1N5W B;  1VQ4 H;  4GKM A;  5BO3 A;  1NVI E;  5C1R A;  3CCM H;  2I14 A;  5GAE N;  1VQ8 H;  3NVY C;  1N63 B;  3AN1 A;  3TQV A;  3AM9 A;  2JBM A;  2OMD A;  4ZTV A;  1K8A J;  3ETR C;  2B7P A;  3OW2 H;  1O17 A;  3R88 A;  4X5C A;  4KWW A;  3GNN A;  1OTP A;  3VMM A;  4WCE J;  1O4U A;  1K9M J;  1QVF H;  5EY3 A;  2W3R B;  3PIP J;  1KC8 J;  4X58 A;  1N60 B;  1UOU A;  2ZJQ J;  3BII E;  1WYG A;  3UU1 A;  4X5E A;  1VQ6 H;  1Q81 J;  4GA4 A;  3CC2 H;  3DLL J;  1FFU B;  5HL7 J;  1YHQ H;  1JRP B;  4US9 A;  1N61 B;  3CCL H;  3CCS H;  1ZXY A;  2OTJ H;  5EP8 A;  4I9A A;  2BPQ A;  2TPT A;  4EAF A;  3C2V A;  3CF5 J;  4ZOF A;  4OWU A;  2WK6 A;  4X5A A;  3FC4 A;  4OWO A;  5DM7 J;  3CCE H;  4HKM A;  1BRW A;  4YEK A;  1K73 J;  1JJ2 H;  4C7Y A;  3WNZ A;  1V8G A;  3SR6 C;  3CMA H;  2WK5 A;  3R6C A;  3PIO J;  2ZJP J;  1Q86 J;  3G6E H;  1AZY A;  4ZOJ A;  4IOC J;  1W2B H;  4GA6 A;  2PA2 A;  1DGJ A;  4IO9 J;  3CD6 H;  1ZYK A;  1VQN H;  1VLB A;  3C2F A;  3NVV C;  5C2L A;  3QS8 A;  5JVG J;  1VQ9 H;  5MLC O;  4ZOH A;  3CPW H;  3J7Z M;  1KGZ A;  2I1O A;  5BYT A;  4N8Q A;  5AYY A;  1YJN H;  3NS1 C;  5HUP A;  1QAP A;  1JRO B;  3C2E A;  1N5X A;  1X1O A;  4X5B A;  5H1S O;  1KD1 J;  2W3S B; 
#chains in the Genus database with same CATH homology
 3GBR A;  4OWN A;  3QR9 A;  4X46 A;  5C7S A;  4GA5 A;  3QSA A;  4OWM A;  4YI7 A;  4N5V A;  4EAD A;  1ZVW A;  4XR5 A;  4LHM A;  1VQU A;  4ZOK A;  5BNE A;  5BO2 A;  4IJ1 A;  4YYY A;  2ELC A;  3QQS A;  3TWP A;  2DSJ A;  4X59 A;  4N93 A;  4OWS A;  3H5Q A;  2J0F A;  4GIU A;  1KHD A;  4GTN A;  2GVQ A;  4X5D A;  4M0R A;  4OWV A;  4OWQ A;  1GXB A;  4MUO A;  4GKM A;  5BO3 A;  5C1R A;  4ZTV A;  1O17 A;  3R88 A;  4X5C A;  1OTP A;  5EY3 A;  4X58 A;  1UOU A;  3UU1 A;  4X5E A;  4GA4 A;  1ZXY A;  5EP8 A;  2BPQ A;  2TPT A;  4EAF A;  4ZOF A;  4OWU A;  2WK6 A;  4X5A A;  4OWO A;  4HKM A;  1BRW A;  4YEK A;  1V8G A;  2WK5 A;  3R6C A;  1AZY A;  4ZOJ A;  4GA6 A;  1ZYK A;  5C2L A;  3QS8 A;  1KGZ A;  5BYT A;  4N8Q A;  4X5B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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