4EC2A

Crystal structure of trimeric frataxin from the yeast saccharomyces cerevisiae, complexed with ferrous
Total Genus 20
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
112
structure length
112
Chain Sequence
VPQEVLNLPLEKAHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFGTYVINKQPPNKQIWLASPLSGPNRFDLLNGEWVSLRNGTKLTDILTEEVEKAISK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
molecule keywords Frataxin homolog, mitochondrial
publication title The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 20
structure length 112
sequence length 112
ec nomenclature ec 1.16.3.1: Ferroxidase.
pdb deposition date 2012-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01491 Frataxin_Cyay Frataxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.10 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Frataxin/CyaY 4ec2A01
1SOYA 3T3KA 3T3XA 2FQLA 4LP1A 1LY7A 3S5FA 3OERA 3T3JA 3S5DA 4LK8A 4HS5A 4JPDA 2EFFA 3T3LA 3OEQA 3T3TA 1EKGA 4EC2A 2GA5A 2P1XA 3S4MA 3S5EA 1EW4A
chains in the Genus database with same CATH superfamily
1SOYA 3T3KA 1WHZA 3SSDA 3A5PA 3T3XA 2FQLA 4HEA7 4LP1A 1D2MA 3SSEA 3IMOA 1LY7A 3S5FA 2FUG7 3GD9A 3I9V7 3OERA 3T3JA 3S5DA 4C26A 1V5RA 4HS5A 4JPDA 4LK8A 2EFFA 3SSCA 3T3LA 3OEQA 3T3TA 1EKGA 4EC2A 2GA5A 2P1XA 3GD0A 3S4MA 3IAS7 3S5EA 4P78C 3IAM7 1EW4A
chains in the Genus database with same CATH topology
1SOYA 3T3KA 3T3XA 2FQLA 4LP1A 1LY7A 3S5FA 3OERA 3T3JA 3S5DA 4LK8A 4HS5A 4JPDA 2EFFA 3T3LA 3OEQA 3T3TA 1EKGA 4EC2A 2GA5A 2P1XA 3S4MA 3S5EA 1EW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SOY A;  3T3K A;  3T3X A;  2FQL A;  4LP1 A;  1LY7 A;  3S5F A;  3OER A;  3T3J A;  3S5D A;  4LK8 A;  4HS5 A;  4JPD A;  2EFF A;  3T3L A;  3OEQ A;  3T3T A;  1EKG A;  4EC2 A;  2GA5 A;  2P1X A;  3S4M A;  3S5E A;  1EW4 A; 
#chains in the Genus database with same CATH topology
 1SOY A;  3T3K A;  1WHZ A;  3SSD A;  3A5P A;  3T3X A;  2FQL A;  4HEA 7;  4LP1 A;  1D2M A;  3SSE A;  3IMO A;  1LY7 A;  3S5F A;  2FUG 7;  3GD9 A;  3I9V 7;  3OER A;  3T3J A;  3S5D A;  4C26 A;  1V5R A;  4HS5 A;  4JPD A;  4LK8 A;  2EFF A;  3SSC A;  3T3L A;  3OEQ A;  3T3T A;  1EKG A;  4EC2 A;  2GA5 A;  2P1X A;  3GD0 A;  3S4M A;  3IAS 7;  3S5E A;  4P78 C;  3IAM 7;  1EW4 A; 
#chains in the Genus database with same CATH homology
 1SOY A;  3T3K A;  3T3X A;  2FQL A;  4LP1 A;  1LY7 A;  3S5F A;  3OER A;  3T3J A;  3S5D A;  4LK8 A;  4HS5 A;  4JPD A;  2EFF A;  3T3L A;  3OEQ A;  3T3T A;  1EKG A;  4EC2 A;  2GA5 A;  2P1X A;  3S4M A;  3S5E A;  1EW4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...