The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
133
|
sequence length |
368
|
structure length |
368
|
Chain Sequence |
TYDFKNLPADSGAKPTEDQMSAVVATFVDEVALPTYKDMLTKMTAYKNAVDKFIASGSKNDLADACDAWRAVRVPWEQSEAFLFGVADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDAEDGPQNLRGFHTAEKMLFLDGEPRDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGSAYSIGNVYQAIELMLNGNNGMAGISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVESWYSWNSLDDYKNNIVSIKNAYFGGRDLDEESASESSLHALTKMINPTLDSLMVVQIDKTIDAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSKFT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
Putative iron-regulated protein A
|
| publication title |
Crystal structure of a putative iron-regulated protein A precursor (BDI_2603) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution
rcsb |
| source organism |
Parabacteroides distasonis atcc 8503
|
| total genus |
133
|
| structure length |
368
|
| sequence length |
368
|
| ec nomenclature | |
| pdb deposition date | 2012-03-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09375 | Peptidase_M75 | Imelysin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | A middle domain of Talin 1 | A middle domain of Talin 1 |
#chains in the Genus database with same CATH superfamily 3PF0 A; 4ECG A; 3WSC A; 4BGO A; 3AT7 A; #chains in the Genus database with same CATH topology 2KGX A; 3PF0 A; 2X0C A; 3AY5 A; 4BGO A; 4W8P A; 4F7G B; 2LQU A; 5JDH A; 3V5S A; 2L10 A; 3WSC A; 2L7N A; 5HXS A; 5HXH A; 5JDG A; 5HWY A; 1SJ7 A; 5HXR A; 2XQY A; 2KBB A; 1SJ8 A; 2MTC A; 3FYQ A; 3M1C A; 3V5U A; 5HXE A; 3AT7 A; 3WUR A; 3VJZ A; 5FZT A; 2KVP A; 5JDL A; 5HWX A; 3PHF 1; 4ECG A; 5HXC A; 4ONR A; 3DYJ A; 5JDQ A; 5T1D A; 5HYA A; 5JDF A; 5JDM A; 5JDN A; #chains in the Genus database with same CATH homology 3PF0 A; 4BGO A; 2LQU A; 5JDH A; 3V5S A; 3WSC A; 5HXS A; 5HXH A; 5JDG A; 5HWY A; 5HXR A; 2XQY A; 2MTC A; 3V5U A; 3M1C A; 5HXE A; 3AT7 A; 3WUR A; 3VJZ A; 5JDL A; 5HWX A; 3PHF 1; 4ECG A; 5HXC A; 4ONR A; 5JDQ A; 5T1D A; 5HYA A; 5JDF A; 5JDM A; 5JDN A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
