4EFAE

Crystal structure of the heterotrimeric egchead peripheral stalk complex of the yeast vacuolar atpase - second conformation
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
225
structure length
225
Chain Sequence
SSAITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords V-type proton ATPase subunit C
publication title Crystal Structure of the Yeast Vacuolar ATPase Heterotrimeric EGC(head) Peripheral Stalk Complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 78
structure length 225
sequence length 225
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2012-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01991 vATP-synt_E ATP synthase (E/31 kDa) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2320.30 Alpha Beta 2-Layer Sandwich hypothetical protein PF0899 fold hypothetical protein PF0899 fold 4efaE02
2DM9A 3V6IA 4DT0A 4DL0E 4EFAE 3K5BA 2DMAA
chains in the Genus database with same CATH superfamily
2DM9A 4DL0E 3A44A 5AUNA 3K5BA 2DMAA 3E8KA 5AUOA 5AUPA 1YUEA 2FT1A 3A43A 1OHGA 2KDXA 4DT0A 3DKTA 2PK8A 4EFAE 2LC0A 1QU3A 3V6IA 2FSYA 2E0ZA 1WZ2A
chains in the Genus database with same CATH topology
2DM9A 5AUOA 3V6IA 4DT0A 5AUPA 1YUEA 3A43A 4DL0E 4EFAE 3A44A 2LC0A 5AUNA 3K5BA 2DMAA 2KDXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DM9 A;  3V6I A;  4DT0 A;  4DL0 E;  4EFA E;  3K5B A;  2DMA A; 
#chains in the Genus database with same CATH topology
 2DM9 A;  4DL0 E;  3A44 A;  5AUN A;  3K5B A;  2DMA A;  3E8K A;  5AUO A;  5AUP A;  1YUE A;  2FT1 A;  3A43 A;  1OHG A;  2KDX A;  4DT0 A;  3DKT A;  2PK8 A;  4EFA E;  2LC0 A;  1QU3 A;  3V6I A;  2FSY A;  2E0Z A;  1WZ2 A; 
#chains in the Genus database with same CATH homology
 2DM9 A;  5AUO A;  3V6I A;  4DT0 A;  5AUP A;  1YUE A;  3A43 A;  4DL0 E;  4EFA E;  3A44 A;  2LC0 A;  5AUN A;  3K5B A;  2DMA A;  2KDX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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