4EFCA

Crystal structure of adenylosuccinate lyase from trypanosoma brucei, tb427tmp.160.5560
Total Genus 188
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
457
structure length
452
Chain Sequence
VDYSVDNPLFALSPLDGRYKRQTKALRAFFSEYGFFRYRVLVEVEYFTALCKDVPTIVPLRSVTDEQLQKLRKITLDCFSVSSAEEIKRLERVTNHDIKAVEYFIKERMDTCGLSHVTEFVHFGLTSQDINNTAIPMMIRDAIVTLYLPALDGIIGSLTSKLVDWDVPMLARTHGQPASPTNLAKEFVVWIERLREQRRQLCEVPTTGKFGGATGNFNAHLVAYPSVNWRAFADMFLAKYLGLKRQQATTQIENYDHLAALCDACARLHVILIDMCRDVWQYISMGFFKQKVKEGEVGSSTMPHKVNPIDFENAEGNLALSNALLNFFASKLPISRLQRDLTDSTVLRNLGVPIGHACVAFASISQGLEKLMISRETISRELSSNWAVVAEGIQTVLRRECYPKPYETLKKLTVTEEQVRNFINGLTDISDDVRAELLAITPFTYVGYVPRF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords Adenylosuccinate lyase
publication title Crystal Structure of Adenylosuccinate Lyase from Trypanosoma Brucei, Tb427tmp.160.5560
rcsb
source organism Trypanosoma brucei brucei
total genus 188
structure length 452
sequence length 457
chains with identical sequence B
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2012-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 4efcA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4efcA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4efcA02
3TV2A 4C6GA 1VDKA 1T6JA 1FURA 2X75A 4V2QA 2RJRA 4V2RA 3BHGA 1YISA 3R6VA 3R6QA 3QBPA 1TJ7A 5EYTA 1GKMA 3UNVA 1HY1A 3GZHA 3CZOA 1TJWA 3KDZA 1XWOA 3E04A 1Y2MA 2VD6A 3RD8A 2PTSA 2E9FA 1K7WA 1GK3A 2PFMA 2O78A 4C5UA 5HW2A 1FUPA 4APBA 4HGVA 3OCEA 4NLEA 1EB4A 2O7DA 1RE5A 1U15A 1TJVA 4ADLA 1T6PA 3KDYA 1JSWA 3C8TA 1HY0A 3NO9A 4EEIA 1DOFA 2QGAB 4BABA 2RJSA 2QVEA 1W27A 2PTQA 2J91A 2O7EA 3NZ4A 1Q5NA 2HVGA 2PTRA 4FFXA 2OHYA 3RRPA 1YFEA 2O7BA 2NYNA 4MX2A 4C5SA 4ADMA 4C5RA 1C3CA 1J3UA 1GKJA 4NSLA 5EYVA 5D6BA 4EFCA 1TJUA 4FLCA 2O7FA 1I0AA 1DCNA 2O6YA 1KQ7A 1FUOA 2NYFA 1GK2A 1B8FA 1FUQA 5F92A 1C3UA 3GTDA 1YFMA 5F91A 1K62A 1U16A 2YIIA 4CQ5A 2FUSA 3R6YA 1AUWA 4APAA 4BAAA 3OCFA
chains in the Genus database with same CATH superfamily
3BWVA 3TV2A 1Z4LA 4C6GA 1VDKA 1T6JA 1FURA 2X75A 4V2QA 2RJRA 4V2RA 3BHGA 2FENA 4L6AA 1YISA 5M0IA 3R6VA 3R6QA 4MUMA 3QBPA 1TJ7A 5EYTA 1GKMA 3UNVA 1HY1A 3GZHA 3CZOA 1T9HA 1TJWA 3F4SA 3KDZA 1XWOA 1Z4PX 3E04A 2VL7A 1Y2MA 2VD6A 3U19A 3RD8A 2PTSA 2E9FA 3F4RA 1K7WA 1Q91A 1GK3A 1Z4KA 2PFMA 2O78A 1Z4MA 4C5UA 5HW2A 1XMDA 1FUPA 4APBA 4HGVA 3OCEA 2JAUA 4NLEA 1EB4A 2O7DA 1RE5A 4WNLA 1U15A 1TJVA 4ADLA 1T6PA 3KDYA 1JSWA 3C8TA 1HY0A 3NO9A 4EEIA 1DOFA 2QGAB 4IQJM 4BABA 2JAWA 4A15A 2RJSA 2QVEA 2RCNA 1MH9A 3CRW1 1W27A 3CRVA 1XL7A 2PTQA 4NFLA 2J91A 2O7EA 3NZ4A 1Q5NA 2HVGA 2PTRA 2YV5A 4FFXA 1Z4QA 2OHYA 2VSFA 4L6CA 3RRPA 1YFEA 2O7BA 2I7DA 2NYNA 4MX2A 4E88A 4C5SA 4ADMA 2D28C 5H8WA 4C5RA 1C3CA 1J3UA 1GKJA 3CI0K 2D27A 4YIHA 4NSLA 2FELA 5EYVA 5D6BA 4EFCA 1TJUA 4MWOA 4FLCA 4L57A 2O7FA 1Z4JA 1Q92A 1Z4IA 1I0AA 1DCNA 2O6YA 1KQ7A 1FUOA 1IW7D 2NYFA 1GK2A 1B8FA 1FUQA 5F92A 1C3UA 3GTDA 1YFMA 5F91A 1K62A 2JARA 1U16A 2YIIA 4CQ5A 1XMCA 5M0JA 2FUSA 1XLYA 3U13A 2JAOA 1XL8A 1U0LA 3F4TA 3R6YA 1AUWA 4YIKA 4APAA 4BAAA 3OCFA
chains in the Genus database with same CATH topology
3TV2A 4C6GA 1VDKA 1T6JA 1FURA 2X75A 4V2QA 2RJRA 4V2RA 3BHGA 1YISA 3R6VA 3R6QA 3QBPA 1TJ7A 5EYTA 1GKMA 3UNVA 1HY1A 3GZHA 3CZOA 1TJWA 3KDZA 1XWOA 3E04A 1Y2MA 2VD6A 3RD8A 2PTSA 2E9FA 1K7WA 1GK3A 2PFMA 2O78A 4C5UA 5HW2A 1FUPA 4APBA 4HGVA 3OCEA 4NLEA 1EB4A 2O7DA 1RE5A 1U15A 1TJVA 4ADLA 1T6PA 3KDYA 1JSWA 3C8TA 1HY0A 3NO9A 4EEIA 1DOFA 2QGAB 4BABA 2RJSA 2QVEA 1W27A 2PTQA 2J91A 2O7EA 3NZ4A 1Q5NA 2HVGA 2PTRA 4FFXA 2OHYA 3RRPA 1YFEA 2O7BA 2NYNA 4MX2A 4C5SA 4ADMA 4C5RA 1C3CA 1J3UA 1GKJA 4NSLA 5EYVA 5D6BA 4EFCA 1TJUA 4FLCA 2O7FA 1I0AA 1DCNA 2O6YA 1KQ7A 1FUOA 2NYFA 1GK2A 1B8FA 1FUQA 5F92A 1C3UA 3GTDA 1YFMA 5F91A 1K62A 1U16A 2YIIA 4CQ5A 2FUSA 3R6YA 1AUWA 4APAA 4BAAA 3OCFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TV2 A;  4C6G A;  1VDK A;  1T6J A;  1FUR A;  2X75 A;  4V2Q A;  2RJR A;  4V2R A;  3BHG A;  1YIS A;  3R6V A;  3R6Q A;  3QBP A;  1TJ7 A;  5EYT A;  1GKM A;  3UNV A;  1HY1 A;  3GZH A;  3CZO A;  1TJW A;  3KDZ A;  1XWO A;  3E04 A;  1Y2M A;  2VD6 A;  3RD8 A;  2PTS A;  2E9F A;  1K7W A;  1GK3 A;  2PFM A;  2O78 A;  4C5U A;  5HW2 A;  1FUP A;  4APB A;  4HGV A;  3OCE A;  4NLE A;  1EB4 A;  2O7D A;  1RE5 A;  1U15 A;  1TJV A;  4ADL A;  1T6P A;  3KDY A;  1JSW A;  3C8T A;  1HY0 A;  3NO9 A;  4EEI A;  1DOF A;  2QGA B;  4BAB A;  2RJS A;  2QVE A;  1W27 A;  2PTQ A;  2J91 A;  2O7E A;  3NZ4 A;  1Q5N A;  2HVG A;  2PTR A;  4FFX A;  2OHY A;  3RRP A;  1YFE A;  2O7B A;  2NYN A;  4MX2 A;  4C5S A;  4ADM A;  4C5R A;  1C3C A;  1J3U A;  1GKJ A;  4NSL A;  5EYV A;  5D6B A;  4EFC A;  1TJU A;  4FLC A;  2O7F A;  1I0A A;  1DCN A;  2O6Y A;  1KQ7 A;  1FUO A;  2NYF A;  1GK2 A;  1B8F A;  1FUQ A;  5F92 A;  1C3U A;  3GTD A;  1YFM A;  5F91 A;  1K62 A;  1U16 A;  2YII A;  4CQ5 A;  2FUS A;  3R6Y A;  1AUW A;  4APA A;  4BAA A;  3OCF A; 
#chains in the Genus database with same CATH topology
 3BWV A;  3TV2 A;  1Z4L A;  4C6G A;  1VDK A;  1T6J A;  1FUR A;  2X75 A;  4V2Q A;  2RJR A;  4V2R A;  3BHG A;  2FEN A;  4L6A A;  1YIS A;  5M0I A;  3R6V A;  3R6Q A;  4MUM A;  3QBP A;  1TJ7 A;  5EYT A;  1GKM A;  3UNV A;  1HY1 A;  3GZH A;  3CZO A;  1T9H A;  1TJW A;  3F4S A;  3KDZ A;  1XWO A;  1Z4P X;  3E04 A;  2VL7 A;  1Y2M A;  2VD6 A;  3U19 A;  3RD8 A;  2PTS A;  2E9F A;  3F4R A;  1K7W A;  1Q91 A;  1GK3 A;  1Z4K A;  2PFM A;  2O78 A;  1Z4M A;  4C5U A;  5HW2 A;  1XMD A;  1FUP A;  4APB A;  4HGV A;  3OCE A;  2JAU A;  4NLE A;  1EB4 A;  2O7D A;  1RE5 A;  4WNL A;  1U15 A;  1TJV A;  4ADL A;  1T6P A;  3KDY A;  1JSW A;  3C8T A;  1HY0 A;  3NO9 A;  4EEI A;  1DOF A;  2QGA B;  4IQJ M;  4BAB A;  2JAW A;  4A15 A;  2RJS A;  2QVE A;  2RCN A;  1MH9 A;  3CRW 1;  1W27 A;  3CRV A;  1XL7 A;  2PTQ A;  4NFL A;  2J91 A;  2O7E A;  3NZ4 A;  1Q5N A;  2HVG A;  2PTR A;  2YV5 A;  4FFX A;  1Z4Q A;  2OHY A;  2VSF A;  4L6C A;  3RRP A;  1YFE A;  2O7B A;  2I7D A;  2NYN A;  4MX2 A;  4E88 A;  4C5S A;  4ADM A;  2D28 C;  5H8W A;  4C5R A;  1C3C A;  1J3U A;  1GKJ A;  3CI0 K;  2D27 A;  4YIH A;  4NSL A;  2FEL A;  5EYV A;  5D6B A;  4EFC A;  1TJU A;  4MWO A;  4FLC A;  4L57 A;  2O7F A;  1Z4J A;  1Q92 A;  1Z4I A;  1I0A A;  1DCN A;  2O6Y A;  1KQ7 A;  1FUO A;  1IW7 D;  2NYF A;  1GK2 A;  1B8F A;  1FUQ A;  5F92 A;  1C3U A;  3GTD A;  1YFM A;  5F91 A;  1K62 A;  2JAR A;  1U16 A;  2YII A;  4CQ5 A;  1XMC A;  5M0J A;  2FUS A;  1XLY A;  3U13 A;  2JAO A;  1XL8 A;  1U0L A;  3F4T A;  3R6Y A;  1AUW A;  4YIK A;  4APA A;  4BAA A;  3OCF A; 
#chains in the Genus database with same CATH homology
 3TV2 A;  4C6G A;  1VDK A;  1T6J A;  1FUR A;  2X75 A;  4V2Q A;  2RJR A;  4V2R A;  3BHG A;  1YIS A;  3R6V A;  3R6Q A;  3QBP A;  1TJ7 A;  5EYT A;  1GKM A;  3UNV A;  1HY1 A;  3GZH A;  3CZO A;  1TJW A;  3KDZ A;  1XWO A;  3E04 A;  1Y2M A;  2VD6 A;  3RD8 A;  2PTS A;  2E9F A;  1K7W A;  1GK3 A;  2PFM A;  2O78 A;  4C5U A;  5HW2 A;  1FUP A;  4APB A;  4HGV A;  3OCE A;  4NLE A;  1EB4 A;  2O7D A;  1RE5 A;  1U15 A;  1TJV A;  4ADL A;  1T6P A;  3KDY A;  1JSW A;  3C8T A;  1HY0 A;  3NO9 A;  4EEI A;  1DOF A;  2QGA B;  4BAB A;  2RJS A;  2QVE A;  1W27 A;  2PTQ A;  2J91 A;  2O7E A;  3NZ4 A;  1Q5N A;  2HVG A;  2PTR A;  4FFX A;  2OHY A;  3RRP A;  1YFE A;  2O7B A;  2NYN A;  4MX2 A;  4C5S A;  4ADM A;  4C5R A;  1C3C A;  1J3U A;  1GKJ A;  4NSL A;  5EYV A;  5D6B A;  4EFC A;  1TJU A;  4FLC A;  2O7F A;  1I0A A;  1DCN A;  2O6Y A;  1KQ7 A;  1FUO A;  2NYF A;  1GK2 A;  1B8F A;  1FUQ A;  5F92 A;  1C3U A;  3GTD A;  1YFM A;  5F91 A;  1K62 A;  1U16 A;  2YII A;  4CQ5 A;  2FUS A;  3R6Y A;  1AUW A;  4APA A;  4BAA A;  3OCF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...