4EGUA

0.95a resolution structure of a histidine triad protein from clostridium difficile
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
118
structure length
118
Chain Sequence
ERMDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAGQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords histidine triad (HIT) protein
publication title 0.95A Resolution Structure of a Histidine Triad Protein from Clostridium difficile
rcsb
source organism Clostridium difficile
total genus 28
structure length 118
sequence length 118
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 4eguA00
3N1SA 3N1TA 3O1CA 3I24A 1Z84A 3BLAA 3OXKA 4RHNA 3LB5A 5IPCA 1ST0A 1Y23A 4YKLB 3P0TA 3R6FA 3OMFA 4NK0A 5I2FA 5CS2A 2OIKA 5FITA 1ST4A 4NJXA 4NDFA 3OHEA 3I4SA 4EGUA 1GUPA 3IMIA 3QGZA 4ZKLA 4QDVA 1XMLA 6RHNA 1KPAA 3SPLA 3KSVA 4XBAA 3L7XA 5IN3A 2FITA 3O0MA 1KPCA 3TW2A 4FITA 1KPFA 5IPEA 3ANOA 3SP4A 4ZKVA 4QDEA 5ED6A 5IPDA 2Q4LA 3OJ7A 2FHIA 1AV5A 4EQHA 5EMTA 4INCA 5I2EA 1HXQA 4NDHA 1KPBA 3FITA 1ZWJA 2H39A 3WO5A 3SPDA 4NDIA 3NRDA 5IPBA 1RZYA 6FITA 5RHNA 4ZGLA 1VLRA 4EQGA 1HXPA 4NDGA 3O1XA 2EO4A 5ED3A 3SZQA 1EMSA 4QEBA 5BV3A 1KPEA 3BL7A 3BL9A 4INIA 2Q4HA 4NJZA 3RHNA 3O1ZA 1GUQA 1FHIA 4NJYA 4EQEA 1XMMA 1FITA
chains in the Genus database with same CATH superfamily
3N1SA 3N1TA 3O1CA 2R7PA 3I24A 1Z84A 3BLAA 3OXKA 4RHNA 3LB5A 5IPCA 1ST0A 1Y23A 4YKLB 4G0AA 3P0TA 3R6FA 3OMFA 4NK0A 5I2FA 5CS2A 2OIKA 5FITA 1ST4A 4NJXA 4NDFA 4G0JA 3OHEA 3I4SA 4EGUA 1GUPA 3IMIA 3QGZA 4I5VA 4ZKLA 2GU0A 4QDVA 1XMLA 6RHNA 1KPAA 3SPLA 3KSVA 2R7CA 3L7XA 4XBAA 5IN3A 2FITA 3O0MA 1KPCA 4I5WA 3TW2A 4FITA 1KPFA 5IPEA 3ANOA 3SP4A 4ZKVA 4QDEA 5ED6A 5IPDA 2Q4LA 3OJ7A 2FHIA 1AV5A 4EQHA 5EMTA 4INCA 4I5TA 5I2EA 1HXQA 1L9VA 4NDHA 1KPBA 3FITA 1ZWJA 2H39A 3WO5A 3SPDA 4NDIA 3NRDA 2POFA 5IPBA 1RZYA 6FITA 5RHNA 4ZGLA 1VLRA 4EQGA 1HXPA 4NDGA 2R7JA 3O1XA 2EO4A 5ED3A 2LJWA 3SZQA 1EMSA 4QEBA 5BV3A 1KPEA 3BL7A 3BL9A 4INIA 2Q4HA 4NJZA 3RHNA 3O1ZA 1GUQA 2R8FA 1FHIA 4NJYA 4EQEA 1XMMA 1FITA
chains in the Genus database with same CATH topology
3N1SA 3N1TA 3O1CA 3I24A 1Z84A 3BLAA 3OXKA 4RHNA 3LB5A 5IPCA 1ST0A 1Y23A 4YKLB 3P0TA 3R6FA 3OMFA 4NK0A 5I2FA 5CS2A 2OIKA 5FITA 1ST4A 4NJXA 4NDFA 3OHEA 3I4SA 4EGUA 1GUPA 3IMIA 3QGZA 4ZKLA 4QDVA 1XMLA 6RHNA 1KPAA 3SPLA 3KSVA 4XBAA 3L7XA 5IN3A 2FITA 3O0MA 1KPCA 3TW2A 4FITA 1KPFA 5IPEA 3ANOA 3SP4A 4ZKVA 4QDEA 5ED6A 5IPDA 2Q4LA 3OJ7A 2FHIA 1AV5A 4EQHA 5EMTA 4INCA 5I2EA 1HXQA 4NDHA 1KPBA 3FITA 1ZWJA 2H39A 3WO5A 3SPDA 4NDIA 3NRDA 5IPBA 1RZYA 6FITA 5RHNA 4ZGLA 1VLRA 4EQGA 1HXPA 4NDGA 3O1XA 2EO4A 5ED3A 3SZQA 1EMSA 4QEBA 5BV3A 1KPEA 3BL7A 3BL9A 4INIA 2Q4HA 4NJZA 3RHNA 3O1ZA 1GUQA 1FHIA 4NJYA 4EQEA 1XMMA 1FITA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N1S A;  3N1T A;  3O1C A;  3I24 A;  1Z84 A;  3BLA A;  3OXK A;  4RHN A;  3LB5 A;  5IPC A;  1ST0 A;  1Y23 A;  4YKL B;  3P0T A;  3R6F A;  3OMF A;  4NK0 A;  5I2F A;  5CS2 A;  2OIK A;  5FIT A;  1ST4 A;  4NJX A;  4NDF A;  3OHE A;  3I4S A;  4EGU A;  1GUP A;  3IMI A;  3QGZ A;  4ZKL A;  4QDV A;  1XML A;  6RHN A;  1KPA A;  3SPL A;  3KSV A;  4XBA A;  3L7X A;  5IN3 A;  2FIT A;  3O0M A;  1KPC A;  3TW2 A;  4FIT A;  1KPF A;  5IPE A;  3ANO A;  3SP4 A;  4ZKV A;  4QDE A;  5ED6 A;  5IPD A;  2Q4L A;  3OJ7 A;  2FHI A;  1AV5 A;  4EQH A;  5EMT A;  4INC A;  5I2E A;  1HXQ A;  4NDH A;  1KPB A;  3FIT A;  1ZWJ A;  2H39 A;  3WO5 A;  3SPD A;  4NDI A;  3NRD A;  5IPB A;  1RZY A;  6FIT A;  5RHN A;  4ZGL A;  1VLR A;  4EQG A;  1HXP A;  4NDG A;  3O1X A;  2EO4 A;  5ED3 A;  3SZQ A;  1EMS A;  4QEB A;  5BV3 A;  1KPE A;  3BL7 A;  3BL9 A;  4INI A;  2Q4H A;  4NJZ A;  3RHN A;  3O1Z A;  1GUQ A;  1FHI A;  4NJY A;  4EQE A;  1XMM A;  1FIT A; 
#chains in the Genus database with same CATH topology
 3N1S A;  3N1T A;  3O1C A;  2R7P A;  3I24 A;  1Z84 A;  3BLA A;  3OXK A;  4RHN A;  3LB5 A;  5IPC A;  1ST0 A;  1Y23 A;  4YKL B;  4G0A A;  3P0T A;  3R6F A;  3OMF A;  4NK0 A;  5I2F A;  5CS2 A;  2OIK A;  5FIT A;  1ST4 A;  4NJX A;  4NDF A;  4G0J A;  3OHE A;  3I4S A;  4EGU A;  1GUP A;  3IMI A;  3QGZ A;  4I5V A;  4ZKL A;  2GU0 A;  4QDV A;  1XML A;  6RHN A;  1KPA A;  3SPL A;  3KSV A;  2R7C A;  3L7X A;  4XBA A;  5IN3 A;  2FIT A;  3O0M A;  1KPC A;  4I5W A;  3TW2 A;  4FIT A;  1KPF A;  5IPE A;  3ANO A;  3SP4 A;  4ZKV A;  4QDE A;  5ED6 A;  5IPD A;  2Q4L A;  3OJ7 A;  2FHI A;  1AV5 A;  4EQH A;  5EMT A;  4INC A;  4I5T A;  5I2E A;  1HXQ A;  1L9V A;  4NDH A;  1KPB A;  3FIT A;  1ZWJ A;  2H39 A;  3WO5 A;  3SPD A;  4NDI A;  3NRD A;  2POF A;  5IPB A;  1RZY A;  6FIT A;  5RHN A;  4ZGL A;  1VLR A;  4EQG A;  1HXP A;  4NDG A;  2R7J A;  3O1X A;  2EO4 A;  5ED3 A;  2LJW A;  3SZQ A;  1EMS A;  4QEB A;  5BV3 A;  1KPE A;  3BL7 A;  3BL9 A;  4INI A;  2Q4H A;  4NJZ A;  3RHN A;  3O1Z A;  1GUQ A;  2R8F A;  1FHI A;  4NJY A;  4EQE A;  1XMM A;  1FIT A; 
#chains in the Genus database with same CATH homology
 3N1S A;  3N1T A;  3O1C A;  3I24 A;  1Z84 A;  3BLA A;  3OXK A;  4RHN A;  3LB5 A;  5IPC A;  1ST0 A;  1Y23 A;  4YKL B;  3P0T A;  3R6F A;  3OMF A;  4NK0 A;  5I2F A;  5CS2 A;  2OIK A;  5FIT A;  1ST4 A;  4NJX A;  4NDF A;  3OHE A;  3I4S A;  4EGU A;  1GUP A;  3IMI A;  3QGZ A;  4ZKL A;  4QDV A;  1XML A;  6RHN A;  1KPA A;  3SPL A;  3KSV A;  4XBA A;  3L7X A;  5IN3 A;  2FIT A;  3O0M A;  1KPC A;  3TW2 A;  4FIT A;  1KPF A;  5IPE A;  3ANO A;  3SP4 A;  4ZKV A;  4QDE A;  5ED6 A;  5IPD A;  2Q4L A;  3OJ7 A;  2FHI A;  1AV5 A;  4EQH A;  5EMT A;  4INC A;  5I2E A;  1HXQ A;  4NDH A;  1KPB A;  3FIT A;  1ZWJ A;  2H39 A;  3WO5 A;  3SPD A;  4NDI A;  3NRD A;  5IPB A;  1RZY A;  6FIT A;  5RHN A;  4ZGL A;  1VLR A;  4EQG A;  1HXP A;  4NDG A;  3O1X A;  2EO4 A;  5ED3 A;  3SZQ A;  1EMS A;  4QEB A;  5BV3 A;  1KPE A;  3BL7 A;  3BL9 A;  4INI A;  2Q4H A;  4NJZ A;  3RHN A;  3O1Z A;  1GUQ A;  1FHI A;  4NJY A;  4EQE A;  1XMM A;  1FIT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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