4EMJB

Complex between the reductase and ferredoxin components of toluene dioxygenase
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHVDLDNGELK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TodA
publication title Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4emjB00
2ZYLA 3AZCA 1O7GA 1ZRTE 3GTEA 2BMQA 2NWFA 2IBZE 5KLVE 4QDDA 1O7NA 3VMHD 4QDFA 2NUMA 2QPZA 3CWBE 4AAYB 1NTZE 1O7PA 1L0LE 4HM6A 3GB4A 3GZYA 5CXMA 3H1JE 2YFJA 2HMKA 1BCCE 1G8KB 3CX5E 4NBAD 3FOUA 3GL2A 4OGQD 2QJYC 3C0DA 4HM8A 4PV1D 2QJKC 2GBWA 4U3FE 1SQQE 3GL0A 1O7MA 3H1HE 2DE6D 4HM1A 2YFLA 1KB9E 3EN1A 4EMJB 4HKVA 3L74E 2Q3WA 2FYNC 3VCPA 4HJLA 2NVFA 4HM2A 2YVJB 1NYKA 2DE5D 2GBXA 3BCCE 3H1LE 4NBFD 3GTSA 1VF5D 4QCKA 2A06E 3L73E 4H13D 1SQXE 2D2CD 1VM9A 1SQBE 1RIEA 3L71E 2NVGA 1SQVE 1UUVA 3VMID 5BOKA 3H1IE 3H1KE 4HM5A 3GOBA 4HM7A 4HM0A 4QDCA 5AEUA 2HMJA 2E76D 3EQQA 1FQTA 1L0NE 3GCEA 4P1CH 2XSOA 4QUQA 1VCKA 3GZXA 2B1XA 2YIUC 2QJPC 2HMOA 3VMGD 2XSHA 1NDOA 5AEWA 3TGUE 2E4PA 1O7HA 1PPJE 1G8JB 1PP9E 2HMNA 4NB9D 2JZAA 4AIVA 3GKEA 1EZVE 2I7FA 5KKZC 3L72E 4PD4E 2BMOA 2E4QA 4NBBD 2JO6A 1KYOE 3VCAA 2E75D 2FYUE 1JM1A 4NBED 2ZT9D 4QUPA 5KLIC 4HM3A 2CKFA 2XRXA 1O7WA 2BCCE 4H0LD 4P1BH 4QDFB 4NBHD 2B24A 3L75E 1SJGA 1WQLA 1P84E 1ULJA 3D89A 3L70E 2BMRA 4NB8D 2NVEA 1NTME 4NBCD 2YFIA 3N0QA 4QURA 4H44D 4NBGD 2DE7D 1NTKE 1RFSA 2XR8A 1BE3E 1UUWA 3CXHE 2HMLA 4NBDD 2HMMA 1ULIA 1Q90C 1SQPE 1EG9A 2E74D 3DQYA 4HM4A 2NUKA 5HL4A 1NU1E
chains in the Genus database with same CATH superfamily
2ZYLA 3AZCA 1O7GA 1ZRTE 3GTEA 2BMQA 2NWFA 2IBZE 5KLVE 4QDDA 1O7NA 3VMHD 4QDFA 2NUMA 2QPZA 3CWBE 4AAYB 1NTZE 1O7PA 1L0LE 4HM6A 3GB4A 3GZYA 5CXMA 3H1JE 2YFJA 2HMKA 1BCCE 1G8KB 3CX5E 4NBAD 3FOUA 3GL2A 4OGQD 2QJYC 3C0DA 4HM8A 4PV1D 2QJKC 2GBWA 4U3FE 1SQQE 3GL0A 1O7MA 3H1HE 2DE6D 4HM1A 2YFLA 1KB9E 3EN1A 4EMJB 4HKVA 3L74E 2Q3WA 2FYNC 3VCPA 4HJLA 2NVFA 4HM2A 2YVJB 1NYKA 2DE5D 2GBXA 3BCCE 3H1LE 4NBFD 3GTSA 1VF5D 4QCKA 2A06E 3L73E 4H13D 1SQXE 2D2CD 1VM9A 1SQBE 1RIEA 3L71E 2NVGA 1SQVE 1UUVA 3VMID 5BOKA 3H1IE 3H1KE 4HM5A 3GOBA 4HM7A 4HM0A 4QDCA 5AEUA 2HMJA 2E76D 3EQQA 1FQTA 1L0NE 3GCEA 4P1CH 2XSOA 4QUQA 1VCKA 3GZXA 2B1XA 2YIUC 2QJPC 2HMOA 3VMGD 2XSHA 1NDOA 5AEWA 3TGUE 2E4PA 1O7HA 1PPJE 1G8JB 1PP9E 2HMNA 4NB9D 2JZAA 4AIVA 3GKEA 1EZVE 2I7FA 5KKZC 3L72E 4PD4E 2BMOA 2E4QA 4NBBD 2JO6A 1KYOE 3VCAA 2E75D 2FYUE 1JM1A 4NBED 2ZT9D 4QUPA 5KLIC 4HM3A 2CKFA 2XRXA 1O7WA 2BCCE 4H0LD 4P1BH 4QDFB 4NBHD 2B24A 3L75E 1SJGA 1WQLA 1P84E 1ULJA 3D89A 3L70E 2BMRA 4NB8D 2NVEA 1NTME 4NBCD 2YFIA 3N0QA 4QURA 4H44D 4NBGD 2DE7D 1NTKE 1RFSA 2XR8A 1BE3E 1UUWA 3CXHE 2HMLA 4NBDD 2HMMA 1ULIA 1Q90C 1SQPE 1EG9A 2E74D 3DQYA 4HM4A 2NUKA 5HL4A 1NU1E
chains in the Genus database with same CATH topology
2ZYLA 3AZCA 1O7GA 1ZRTE 3GTEA 2BMQA 2NWFA 2IBZE 5KLVE 4QDDA 1O7NA 3VMHD 4QDFA 2NUMA 2QPZA 3CWBE 4AAYB 1NTZE 1O7PA 1L0LE 4HM6A 3GB4A 3GZYA 5CXMA 3H1JE 2YFJA 2HMKA 1BCCE 1G8KB 3CX5E 4NBAD 3FOUA 3GL2A 4OGQD 2QJYC 3C0DA 4HM8A 4PV1D 2QJKC 2GBWA 4U3FE 1SQQE 3GL0A 1O7MA 3H1HE 2DE6D 4HM1A 2YFLA 1KB9E 3EN1A 4EMJB 4HKVA 3L74E 2Q3WA 2FYNC 3VCPA 4HJLA 2NVFA 4HM2A 2YVJB 1NYKA 2DE5D 2GBXA 3BCCE 3H1LE 4NBFD 3GTSA 1VF5D 4QCKA 2A06E 3L73E 4H13D 1SQXE 2D2CD 1VM9A 1SQBE 1RIEA 3L71E 2NVGA 1SQVE 1UUVA 3VMID 5BOKA 3H1IE 3H1KE 4HM5A 3GOBA 4HM7A 4HM0A 4QDCA 5AEUA 2HMJA 2E76D 3EQQA 1FQTA 1L0NE 3GCEA 4P1CH 2XSOA 4QUQA 1VCKA 3GZXA 2B1XA 2YIUC 2QJPC 2HMOA 3VMGD 2XSHA 1NDOA 5AEWA 3TGUE 2E4PA 1O7HA 1PPJE 1G8JB 1PP9E 2HMNA 4NB9D 2JZAA 4AIVA 3GKEA 1EZVE 2I7FA 5KKZC 3L72E 4PD4E 2BMOA 2E4QA 4NBBD 2JO6A 1KYOE 3VCAA 2E75D 2FYUE 1JM1A 4NBED 2ZT9D 4QUPA 5KLIC 4HM3A 2CKFA 2XRXA 1O7WA 2BCCE 4H0LD 4P1BH 4QDFB 4NBHD 2B24A 3L75E 1SJGA 1WQLA 1P84E 1ULJA 3D89A 3L70E 2BMRA 4NB8D 2NVEA 1NTME 4NBCD 2YFIA 3N0QA 4QURA 4H44D 4NBGD 2DE7D 1NTKE 1RFSA 2XR8A 1BE3E 1UUWA 3CXHE 2HMLA 4NBDD 2HMMA 1ULIA 1Q90C 1SQPE 1EG9A 2E74D 3DQYA 4HM4A 2NUKA 5HL4A 1NU1E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZYL A;  3AZC A;  1O7G A;  1ZRT E;  3GTE A;  2BMQ A;  2NWF A;  2IBZ E;  5KLV E;  4QDD A;  1O7N A;  3VMH D;  4QDF A;  2NUM A;  2QPZ A;  3CWB E;  4AAY B;  1NTZ E;  1O7P A;  1L0L E;  4HM6 A;  3GB4 A;  3GZY A;  5CXM A;  3H1J E;  2YFJ A;  2HMK A;  1BCC E;  1G8K B;  3CX5 E;  4NBA D;  3FOU A;  3GL2 A;  4OGQ D;  2QJY C;  3C0D A;  4HM8 A;  4PV1 D;  2QJK C;  2GBW A;  4U3F E;  1SQQ E;  3GL0 A;  1O7M A;  3H1H E;  2DE6 D;  4HM1 A;  2YFL A;  1KB9 E;  3EN1 A;  4EMJ B;  4HKV A;  3L74 E;  2Q3W A;  2FYN C;  3VCP A;  4HJL A;  2NVF A;  4HM2 A;  2YVJ B;  1NYK A;  2DE5 D;  2GBX A;  3BCC E;  3H1L E;  4NBF D;  3GTS A;  1VF5 D;  4QCK A;  2A06 E;  3L73 E;  4H13 D;  1SQX E;  2D2C D;  1VM9 A;  1SQB E;  1RIE A;  3L71 E;  2NVG A;  1SQV E;  1UUV A;  3VMI D;  5BOK A;  3H1I E;  3H1K E;  4HM5 A;  3GOB A;  4HM7 A;  4HM0 A;  4QDC A;  5AEU A;  2HMJ A;  2E76 D;  3EQQ A;  1FQT A;  1L0N E;  3GCE A;  4P1C H;  2XSO A;  4QUQ A;  1VCK A;  3GZX A;  2B1X A;  2YIU C;  2QJP C;  2HMO A;  3VMG D;  2XSH A;  1NDO A;  5AEW A;  3TGU E;  2E4P A;  1O7H A;  1PPJ E;  1G8J B;  1PP9 E;  2HMN A;  4NB9 D;  2JZA A;  4AIV A;  3GKE A;  1EZV E;  2I7F A;  5KKZ C;  3L72 E;  4PD4 E;  2BMO A;  2E4Q A;  4NBB D;  2JO6 A;  1KYO E;  3VCA A;  2E75 D;  2FYU E;  1JM1 A;  4NBE D;  2ZT9 D;  4QUP A;  5KLI C;  4HM3 A;  2CKF A;  2XRX A;  1O7W A;  2BCC E;  4H0L D;  4P1B H;  4QDF B;  4NBH D;  2B24 A;  3L75 E;  1SJG A;  1WQL A;  1P84 E;  1ULJ A;  3D89 A;  3L70 E;  2BMR A;  4NB8 D;  2NVE A;  1NTM E;  4NBC D;  2YFI A;  3N0Q A;  4QUR A;  4H44 D;  4NBG D;  2DE7 D;  1NTK E;  1RFS A;  2XR8 A;  1BE3 E;  1UUW A;  3CXH E;  2HML A;  4NBD D;  2HMM A;  1ULI A;  1Q90 C;  1SQP E;  1EG9 A;  2E74 D;  3DQY A;  4HM4 A;  2NUK A;  5HL4 A;  1NU1 E; 
#chains in the Genus database with same CATH topology
 2ZYL A;  3AZC A;  1O7G A;  1ZRT E;  3GTE A;  2BMQ A;  2NWF A;  2IBZ E;  5KLV E;  4QDD A;  1O7N A;  3VMH D;  4QDF A;  2NUM A;  2QPZ A;  3CWB E;  4AAY B;  1NTZ E;  1O7P A;  1L0L E;  4HM6 A;  3GB4 A;  3GZY A;  5CXM A;  3H1J E;  2YFJ A;  2HMK A;  1BCC E;  1G8K B;  3CX5 E;  4NBA D;  3FOU A;  3GL2 A;  4OGQ D;  2QJY C;  3C0D A;  4HM8 A;  4PV1 D;  2QJK C;  2GBW A;  4U3F E;  1SQQ E;  3GL0 A;  1O7M A;  3H1H E;  2DE6 D;  4HM1 A;  2YFL A;  1KB9 E;  3EN1 A;  4EMJ B;  4HKV A;  3L74 E;  2Q3W A;  2FYN C;  3VCP A;  4HJL A;  2NVF A;  4HM2 A;  2YVJ B;  1NYK A;  2DE5 D;  2GBX A;  3BCC E;  3H1L E;  4NBF D;  3GTS A;  1VF5 D;  4QCK A;  2A06 E;  3L73 E;  4H13 D;  1SQX E;  2D2C D;  1VM9 A;  1SQB E;  1RIE A;  3L71 E;  2NVG A;  1SQV E;  1UUV A;  3VMI D;  5BOK A;  3H1I E;  3H1K E;  4HM5 A;  3GOB A;  4HM7 A;  4HM0 A;  4QDC A;  5AEU A;  2HMJ A;  2E76 D;  3EQQ A;  1FQT A;  1L0N E;  3GCE A;  4P1C H;  2XSO A;  4QUQ A;  1VCK A;  3GZX A;  2B1X A;  2YIU C;  2QJP C;  2HMO A;  3VMG D;  2XSH A;  1NDO A;  5AEW A;  3TGU E;  2E4P A;  1O7H A;  1PPJ E;  1G8J B;  1PP9 E;  2HMN A;  4NB9 D;  2JZA A;  4AIV A;  3GKE A;  1EZV E;  2I7F A;  5KKZ C;  3L72 E;  4PD4 E;  2BMO A;  2E4Q A;  4NBB D;  2JO6 A;  1KYO E;  3VCA A;  2E75 D;  2FYU E;  1JM1 A;  4NBE D;  2ZT9 D;  4QUP A;  5KLI C;  4HM3 A;  2CKF A;  2XRX A;  1O7W A;  2BCC E;  4H0L D;  4P1B H;  4QDF B;  4NBH D;  2B24 A;  3L75 E;  1SJG A;  1WQL A;  1P84 E;  1ULJ A;  3D89 A;  3L70 E;  2BMR A;  4NB8 D;  2NVE A;  1NTM E;  4NBC D;  2YFI A;  3N0Q A;  4QUR A;  4H44 D;  4NBG D;  2DE7 D;  1NTK E;  1RFS A;  2XR8 A;  1BE3 E;  1UUW A;  3CXH E;  2HML A;  4NBD D;  2HMM A;  1ULI A;  1Q90 C;  1SQP E;  1EG9 A;  2E74 D;  3DQY A;  4HM4 A;  2NUK A;  5HL4 A;  1NU1 E; 
#chains in the Genus database with same CATH homology
 2ZYL A;  3AZC A;  1O7G A;  1ZRT E;  3GTE A;  2BMQ A;  2NWF A;  2IBZ E;  5KLV E;  4QDD A;  1O7N A;  3VMH D;  4QDF A;  2NUM A;  2QPZ A;  3CWB E;  4AAY B;  1NTZ E;  1O7P A;  1L0L E;  4HM6 A;  3GB4 A;  3GZY A;  5CXM A;  3H1J E;  2YFJ A;  2HMK A;  1BCC E;  1G8K B;  3CX5 E;  4NBA D;  3FOU A;  3GL2 A;  4OGQ D;  2QJY C;  3C0D A;  4HM8 A;  4PV1 D;  2QJK C;  2GBW A;  4U3F E;  1SQQ E;  3GL0 A;  1O7M A;  3H1H E;  2DE6 D;  4HM1 A;  2YFL A;  1KB9 E;  3EN1 A;  4EMJ B;  4HKV A;  3L74 E;  2Q3W A;  2FYN C;  3VCP A;  4HJL A;  2NVF A;  4HM2 A;  2YVJ B;  1NYK A;  2DE5 D;  2GBX A;  3BCC E;  3H1L E;  4NBF D;  3GTS A;  1VF5 D;  4QCK A;  2A06 E;  3L73 E;  4H13 D;  1SQX E;  2D2C D;  1VM9 A;  1SQB E;  1RIE A;  3L71 E;  2NVG A;  1SQV E;  1UUV A;  3VMI D;  5BOK A;  3H1I E;  3H1K E;  4HM5 A;  3GOB A;  4HM7 A;  4HM0 A;  4QDC A;  5AEU A;  2HMJ A;  2E76 D;  3EQQ A;  1FQT A;  1L0N E;  3GCE A;  4P1C H;  2XSO A;  4QUQ A;  1VCK A;  3GZX A;  2B1X A;  2YIU C;  2QJP C;  2HMO A;  3VMG D;  2XSH A;  1NDO A;  5AEW A;  3TGU E;  2E4P A;  1O7H A;  1PPJ E;  1G8J B;  1PP9 E;  2HMN A;  4NB9 D;  2JZA A;  4AIV A;  3GKE A;  1EZV E;  2I7F A;  5KKZ C;  3L72 E;  4PD4 E;  2BMO A;  2E4Q A;  4NBB D;  2JO6 A;  1KYO E;  3VCA A;  2E75 D;  2FYU E;  1JM1 A;  4NBE D;  2ZT9 D;  4QUP A;  5KLI C;  4HM3 A;  2CKF A;  2XRX A;  1O7W A;  2BCC E;  4H0L D;  4P1B H;  4QDF B;  4NBH D;  2B24 A;  3L75 E;  1SJG A;  1WQL A;  1P84 E;  1ULJ A;  3D89 A;  3L70 E;  2BMR A;  4NB8 D;  2NVE A;  1NTM E;  4NBC D;  2YFI A;  3N0Q A;  4QUR A;  4H44 D;  4NBG D;  2DE7 D;  1NTK E;  1RFS A;  2XR8 A;  1BE3 E;  1UUW A;  3CXH E;  2HML A;  4NBD D;  2HMM A;  1ULI A;  1Q90 C;  1SQP E;  1EG9 A;  2E74 D;  3DQY A;  4HM4 A;  2NUK A;  5HL4 A;  1NU1 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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