4EMJB

Complex between the reductase and ferredoxin components of toluene dioxygenase
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHVDLDNGELK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords TodA
publication title Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4emjB00
3L70E 4HM2A 1PP9E 1O7WA 4NB8D 2YFLA 1FQTA 1NTZE 2XRXA 3GZYA 2FYNC 1KYOE 4PD4E 2YFJA 2NVEA 2D2CD 3GZXA 1VM9A 2JO6A 4H0LD 1UUWA 2B1XA 2NVGA 3GTSA 1ZRTE 3H1HE 4HM6A 3L73E 4PV1D 1O7HA 2QJKC 1P84E 3BCCE 1NTME 3GTEA 2XR8A 3H1JE 1VCKA 3L74E 4NB9D 2QJYC 2ZYLA 4QDDA 1G8KB 1JM1A 3EQQA 4U3FE 3H1LE 3EN1A 4HJLA 4HM4A 1NTKE 2QPZA 4NBCD 2CKFA 1NDOA 2HMKA 2E76D 2A06E 1O7NA 2YIUC 1L0NE 2HMLA 3GKEA 2DE5D 2NUKA 2NWFA 3CX5E 3C0DA 1WQLA 4P1CH 2E4QA 1SQVE 2HMMA 1L0LE 3FOUA 5AEUA 4QCKA 4NBGD 4P1BH 3GB4A 4H13D 1ULIA 2GBWA 4HM5A 4HM7A 3TGUE 1SJGA 1G8JB 2E4PA 2NUMA 4HM3A 3VCAA 1NYKA 4EMJB 5KLVE 3L71E 2I7FA 1BCCE 4QDCA 3VMHD 4QUPA 1VF5D 5CXMA 2YVJB 4NBDD 1KB9E 3AZCA 2BCCE 2IBZE 5KLIC 2HMOA 1SQBE 2BMOA 2NVFA 4QDFB 3CWBE 3D89A 1BE3E 4AAYB 1UUVA 4HM8A 4NBAD 2JZAA 1SQQE 2GBXA 4QURA 2XSHA 2DE7D 2HMNA 2E75D 1RIEA 4NBHD 3VMGD 3VMID 4NBBD 4AIVA 3L72E 1PPJE 2HMJA 3GL2A 3L75E 1SQPE 3CXHE 3H1KE 4NBED 2YFIA 1Q90C 4QDFA 3GCEA 1NU1E 2DE6D 2B24A 2XSOA 5HL4A 4HKVA 4HM0A 2QJPC 2Q3WA 3GL0A 5BOKA 1RFSA 2E74D 4H44D 2FYUE 3N0QA 1ULJA 2BMRA 5AEWA 2ZT9D 3H1IE 4HM1A 4QUQA 1O7PA 2BMQA 1EG9A 1EZVE 1O7MA 1O7GA 3GOBA 1SQXE 4OGQD 3VCPA 4NBFD 3DQYA 5KKZC
chains in the Genus database with same CATH superfamily
3L70E 4HM2A 1PP9E 1O7WA 4NB8D 2YFLA 1FQTA 1NTZE 2XRXA 3GZYA 2FYNC 1KYOE 4PD4E 2YFJA 2NVEA 2D2CD 3GZXA 1VM9A 2JO6A 4H0LD 1UUWA 2B1XA 2NVGA 3GTSA 1ZRTE 3H1HE 4HM6A 3L73E 4PV1D 1O7HA 2QJKC 1P84E 3BCCE 1NTME 3GTEA 2XR8A 3H1JE 1VCKA 3L74E 4NB9D 2QJYC 2ZYLA 4QDDA 1G8KB 1JM1A 3EQQA 4U3FE 3H1LE 3EN1A 4HJLA 4HM4A 1NTKE 2QPZA 4NBCD 2CKFA 1NDOA 2HMKA 2E76D 2A06E 1O7NA 2YIUC 1L0NE 2HMLA 3GKEA 2DE5D 2NUKA 2NWFA 3CX5E 3C0DA 1WQLA 4P1CH 2E4QA 1SQVE 2HMMA 1L0LE 3FOUA 5AEUA 4QCKA 4NBGD 4P1BH 3GB4A 4H13D 1ULIA 2GBWA 4HM5A 4HM7A 3TGUE 1SJGA 1G8JB 2E4PA 2NUMA 4HM3A 3VCAA 1NYKA 4EMJB 5KLVE 3L71E 2I7FA 1BCCE 4QDCA 3VMHD 4QUPA 1VF5D 5CXMA 2YVJB 4NBDD 1KB9E 3AZCA 2BCCE 2IBZE 5KLIC 2HMOA 1SQBE 2BMOA 2NVFA 4QDFB 3CWBE 3D89A 1BE3E 4AAYB 1UUVA 4HM8A 4NBAD 2JZAA 1SQQE 2GBXA 4QURA 2XSHA 2DE7D 2HMNA 2E75D 1RIEA 4NBHD 3VMGD 3VMID 4NBBD 4AIVA 3L72E 1PPJE 2HMJA 3GL2A 3L75E 1SQPE 3CXHE 3H1KE 4NBED 2YFIA 1Q90C 4QDFA 3GCEA 1NU1E 2DE6D 2B24A 2XSOA 5HL4A 4HKVA 4HM0A 2QJPC 2Q3WA 3GL0A 5BOKA 1RFSA 2E74D 4H44D 2FYUE 3N0QA 1ULJA 2BMRA 5AEWA 2ZT9D 3H1IE 4HM1A 4QUQA 1O7PA 2BMQA 1EG9A 1EZVE 1O7MA 1O7GA 3GOBA 1SQXE 4OGQD 3VCPA 4NBFD 3DQYA 5KKZC
chains in the Genus database with same CATH topology
3L70E 4HM2A 1PP9E 1O7WA 4NB8D 2YFLA 1FQTA 1NTZE 2XRXA 3GZYA 2FYNC 1KYOE 4PD4E 2YFJA 2NVEA 2D2CD 3GZXA 1VM9A 2JO6A 4H0LD 1UUWA 2B1XA 2NVGA 3GTSA 1ZRTE 3H1HE 4HM6A 3L73E 4PV1D 1O7HA 2QJKC 1P84E 3BCCE 1NTME 3GTEA 2XR8A 3H1JE 1VCKA 3L74E 4NB9D 2QJYC 2ZYLA 4QDDA 1G8KB 1JM1A 3EQQA 4U3FE 3H1LE 3EN1A 4HJLA 4HM4A 1NTKE 2QPZA 4NBCD 2CKFA 1NDOA 2HMKA 2E76D 2A06E 1O7NA 2YIUC 1L0NE 2HMLA 3GKEA 2DE5D 2NUKA 2NWFA 3CX5E 3C0DA 1WQLA 4P1CH 2E4QA 1SQVE 2HMMA 1L0LE 3FOUA 5AEUA 4QCKA 4NBGD 4P1BH 3GB4A 4H13D 1ULIA 2GBWA 4HM5A 4HM7A 3TGUE 1SJGA 1G8JB 2E4PA 2NUMA 4HM3A 3VCAA 1NYKA 4EMJB 5KLVE 3L71E 2I7FA 1BCCE 4QDCA 3VMHD 4QUPA 1VF5D 5CXMA 2YVJB 4NBDD 1KB9E 3AZCA 2BCCE 2IBZE 5KLIC 2HMOA 1SQBE 2BMOA 2NVFA 4QDFB 3CWBE 3D89A 1BE3E 4AAYB 1UUVA 4HM8A 4NBAD 2JZAA 1SQQE 2GBXA 4QURA 2XSHA 2DE7D 2HMNA 2E75D 1RIEA 4NBHD 3VMGD 3VMID 4NBBD 4AIVA 3L72E 1PPJE 2HMJA 3GL2A 3L75E 1SQPE 3CXHE 3H1KE 4NBED 2YFIA 1Q90C 4QDFA 3GCEA 1NU1E 2DE6D 2B24A 2XSOA 5HL4A 4HKVA 4HM0A 2QJPC 2Q3WA 3GL0A 5BOKA 1RFSA 2E74D 4H44D 2FYUE 3N0QA 1ULJA 2BMRA 5AEWA 2ZT9D 3H1IE 4HM1A 4QUQA 1O7PA 2BMQA 1EG9A 1EZVE 1O7MA 1O7GA 3GOBA 1SQXE 4OGQD 3VCPA 4NBFD 3DQYA 5KKZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L70 E;  4HM2 A;  1PP9 E;  1O7W A;  4NB8 D;  2YFL A;  1FQT A;  1NTZ E;  2XRX A;  3GZY A;  2FYN C;  1KYO E;  4PD4 E;  2YFJ A;  2NVE A;  2D2C D;  3GZX A;  1VM9 A;  2JO6 A;  4H0L D;  1UUW A;  2B1X A;  2NVG A;  3GTS A;  1ZRT E;  3H1H E;  4HM6 A;  3L73 E;  4PV1 D;  1O7H A;  2QJK C;  1P84 E;  3BCC E;  1NTM E;  3GTE A;  2XR8 A;  3H1J E;  1VCK A;  3L74 E;  4NB9 D;  2QJY C;  2ZYL A;  4QDD A;  1G8K B;  1JM1 A;  3EQQ A;  4U3F E;  3H1L E;  3EN1 A;  4HJL A;  4HM4 A;  1NTK E;  2QPZ A;  4NBC D;  2CKF A;  1NDO A;  2HMK A;  2E76 D;  2A06 E;  1O7N A;  2YIU C;  1L0N E;  2HML A;  3GKE A;  2DE5 D;  2NUK A;  2NWF A;  3CX5 E;  3C0D A;  1WQL A;  4P1C H;  2E4Q A;  1SQV E;  2HMM A;  1L0L E;  3FOU A;  5AEU A;  4QCK A;  4NBG D;  4P1B H;  3GB4 A;  4H13 D;  1ULI A;  2GBW A;  4HM5 A;  4HM7 A;  3TGU E;  1SJG A;  1G8J B;  2E4P A;  2NUM A;  4HM3 A;  3VCA A;  1NYK A;  4EMJ B;  5KLV E;  3L71 E;  2I7F A;  1BCC E;  4QDC A;  3VMH D;  4QUP A;  1VF5 D;  5CXM A;  2YVJ B;  4NBD D;  1KB9 E;  3AZC A;  2BCC E;  2IBZ E;  5KLI C;  2HMO A;  1SQB E;  2BMO A;  2NVF A;  4QDF B;  3CWB E;  3D89 A;  1BE3 E;  4AAY B;  1UUV A;  4HM8 A;  4NBA D;  2JZA A;  1SQQ E;  2GBX A;  4QUR A;  2XSH A;  2DE7 D;  2HMN A;  2E75 D;  1RIE A;  4NBH D;  3VMG D;  3VMI D;  4NBB D;  4AIV A;  3L72 E;  1PPJ E;  2HMJ A;  3GL2 A;  3L75 E;  1SQP E;  3CXH E;  3H1K E;  4NBE D;  2YFI A;  1Q90 C;  4QDF A;  3GCE A;  1NU1 E;  2DE6 D;  2B24 A;  2XSO A;  5HL4 A;  4HKV A;  4HM0 A;  2QJP C;  2Q3W A;  3GL0 A;  5BOK A;  1RFS A;  2E74 D;  4H44 D;  2FYU E;  3N0Q A;  1ULJ A;  2BMR A;  5AEW A;  2ZT9 D;  3H1I E;  4HM1 A;  4QUQ A;  1O7P A;  2BMQ A;  1EG9 A;  1EZV E;  1O7M A;  1O7G A;  3GOB A;  1SQX E;  4OGQ D;  3VCP A;  4NBF D;  3DQY A;  5KKZ C; 
#chains in the Genus database with same CATH topology
 3L70 E;  4HM2 A;  1PP9 E;  1O7W A;  4NB8 D;  2YFL A;  1FQT A;  1NTZ E;  2XRX A;  3GZY A;  2FYN C;  1KYO E;  4PD4 E;  2YFJ A;  2NVE A;  2D2C D;  3GZX A;  1VM9 A;  2JO6 A;  4H0L D;  1UUW A;  2B1X A;  2NVG A;  3GTS A;  1ZRT E;  3H1H E;  4HM6 A;  3L73 E;  4PV1 D;  1O7H A;  2QJK C;  1P84 E;  3BCC E;  1NTM E;  3GTE A;  2XR8 A;  3H1J E;  1VCK A;  3L74 E;  4NB9 D;  2QJY C;  2ZYL A;  4QDD A;  1G8K B;  1JM1 A;  3EQQ A;  4U3F E;  3H1L E;  3EN1 A;  4HJL A;  4HM4 A;  1NTK E;  2QPZ A;  4NBC D;  2CKF A;  1NDO A;  2HMK A;  2E76 D;  2A06 E;  1O7N A;  2YIU C;  1L0N E;  2HML A;  3GKE A;  2DE5 D;  2NUK A;  2NWF A;  3CX5 E;  3C0D A;  1WQL A;  4P1C H;  2E4Q A;  1SQV E;  2HMM A;  1L0L E;  3FOU A;  5AEU A;  4QCK A;  4NBG D;  4P1B H;  3GB4 A;  4H13 D;  1ULI A;  2GBW A;  4HM5 A;  4HM7 A;  3TGU E;  1SJG A;  1G8J B;  2E4P A;  2NUM A;  4HM3 A;  3VCA A;  1NYK A;  4EMJ B;  5KLV E;  3L71 E;  2I7F A;  1BCC E;  4QDC A;  3VMH D;  4QUP A;  1VF5 D;  5CXM A;  2YVJ B;  4NBD D;  1KB9 E;  3AZC A;  2BCC E;  2IBZ E;  5KLI C;  2HMO A;  1SQB E;  2BMO A;  2NVF A;  4QDF B;  3CWB E;  3D89 A;  1BE3 E;  4AAY B;  1UUV A;  4HM8 A;  4NBA D;  2JZA A;  1SQQ E;  2GBX A;  4QUR A;  2XSH A;  2DE7 D;  2HMN A;  2E75 D;  1RIE A;  4NBH D;  3VMG D;  3VMI D;  4NBB D;  4AIV A;  3L72 E;  1PPJ E;  2HMJ A;  3GL2 A;  3L75 E;  1SQP E;  3CXH E;  3H1K E;  4NBE D;  2YFI A;  1Q90 C;  4QDF A;  3GCE A;  1NU1 E;  2DE6 D;  2B24 A;  2XSO A;  5HL4 A;  4HKV A;  4HM0 A;  2QJP C;  2Q3W A;  3GL0 A;  5BOK A;  1RFS A;  2E74 D;  4H44 D;  2FYU E;  3N0Q A;  1ULJ A;  2BMR A;  5AEW A;  2ZT9 D;  3H1I E;  4HM1 A;  4QUQ A;  1O7P A;  2BMQ A;  1EG9 A;  1EZV E;  1O7M A;  1O7G A;  3GOB A;  1SQX E;  4OGQ D;  3VCP A;  4NBF D;  3DQY A;  5KKZ C; 
#chains in the Genus database with same CATH homology
 3L70 E;  4HM2 A;  1PP9 E;  1O7W A;  4NB8 D;  2YFL A;  1FQT A;  1NTZ E;  2XRX A;  3GZY A;  2FYN C;  1KYO E;  4PD4 E;  2YFJ A;  2NVE A;  2D2C D;  3GZX A;  1VM9 A;  2JO6 A;  4H0L D;  1UUW A;  2B1X A;  2NVG A;  3GTS A;  1ZRT E;  3H1H E;  4HM6 A;  3L73 E;  4PV1 D;  1O7H A;  2QJK C;  1P84 E;  3BCC E;  1NTM E;  3GTE A;  2XR8 A;  3H1J E;  1VCK A;  3L74 E;  4NB9 D;  2QJY C;  2ZYL A;  4QDD A;  1G8K B;  1JM1 A;  3EQQ A;  4U3F E;  3H1L E;  3EN1 A;  4HJL A;  4HM4 A;  1NTK E;  2QPZ A;  4NBC D;  2CKF A;  1NDO A;  2HMK A;  2E76 D;  2A06 E;  1O7N A;  2YIU C;  1L0N E;  2HML A;  3GKE A;  2DE5 D;  2NUK A;  2NWF A;  3CX5 E;  3C0D A;  1WQL A;  4P1C H;  2E4Q A;  1SQV E;  2HMM A;  1L0L E;  3FOU A;  5AEU A;  4QCK A;  4NBG D;  4P1B H;  3GB4 A;  4H13 D;  1ULI A;  2GBW A;  4HM5 A;  4HM7 A;  3TGU E;  1SJG A;  1G8J B;  2E4P A;  2NUM A;  4HM3 A;  3VCA A;  1NYK A;  4EMJ B;  5KLV E;  3L71 E;  2I7F A;  1BCC E;  4QDC A;  3VMH D;  4QUP A;  1VF5 D;  5CXM A;  2YVJ B;  4NBD D;  1KB9 E;  3AZC A;  2BCC E;  2IBZ E;  5KLI C;  2HMO A;  1SQB E;  2BMO A;  2NVF A;  4QDF B;  3CWB E;  3D89 A;  1BE3 E;  4AAY B;  1UUV A;  4HM8 A;  4NBA D;  2JZA A;  1SQQ E;  2GBX A;  4QUR A;  2XSH A;  2DE7 D;  2HMN A;  2E75 D;  1RIE A;  4NBH D;  3VMG D;  3VMI D;  4NBB D;  4AIV A;  3L72 E;  1PPJ E;  2HMJ A;  3GL2 A;  3L75 E;  1SQP E;  3CXH E;  3H1K E;  4NBE D;  2YFI A;  1Q90 C;  4QDF A;  3GCE A;  1NU1 E;  2DE6 D;  2B24 A;  2XSO A;  5HL4 A;  4HKV A;  4HM0 A;  2QJP C;  2Q3W A;  3GL0 A;  5BOK A;  1RFS A;  2E74 D;  4H44 D;  2FYU E;  3N0Q A;  1ULJ A;  2BMR A;  5AEW A;  2ZT9 D;  3H1I E;  4HM1 A;  4QUQ A;  1O7P A;  2BMQ A;  1EG9 A;  1EZV E;  1O7M A;  1O7G A;  3GOB A;  1SQX E;  4OGQ D;  3VCP A;  4NBF D;  3DQY A;  5KKZ C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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