4EMJB

Complex between the reductase and ferredoxin components of toluene dioxygenase
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
b'TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHVDLDNGELK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TodA
publication title Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4emjB00
3L75E 4QDCA 3BCCE 2NUKA 4NBED 5HL4A 3L71E 3H1JE 3VMID 3GZXA 4QCKA 1NDOA 4PD4E 1O7PA 5AEWA 1PP9E 2HMOA 3D89A 4HM8A 5KLVE 2JO6A 1RFSA 2YFJA 2HMMA 3VCAA 1ZRTE 2B1XA 2A06E 2YIUC 4QDDA 3GCEA 3EN1A 4HM5A 5BOKA 2B24A 3CX5E 3H1HE 2HMLA 4QUQA 4QURA 4NB8D 4QDFA 1NU1E 1Q90C 4AIVA 2CKFA 1ULJA 1PPJE 1SQBE 4H0LD 4OGQD 5KLIC 1NTZE 3CWBE 4HM7A 2BMRA 3GTEA 1UUVA 1SQPE 2E76D 1EG9A 2DE5D 4H44D 2E75D 2ZYLA 3TGUE 1FQTA 2QJKC 2XRXA 2ZT9D 3GB4A 3GL2A 2DE7D 1VF5D 3L72E 4HKVA 4NBCD 1L0LE 3GTSA 1BCCE 1JM1A 2QJPC 2BMOA 2DE6D 2GBXA 3AZCA 1NTME 4HM4A 2E4PA 2E4QA 2D2CD 4HM1A 1BE3E 1SJGA 3DQYA 1EZVE 4HM0A 3GZYA 1WQLA 2FYNC 2HMJA 4NBHD 3FOUA 3H1IE 4NBAD 2QJYC 4H13D 4NBGD 4QDFB 2XR8A 4HJLA 1KB9E 1L0NE 4HM6A 2XSOA 4NBFD 1P84E 2XSHA 2BCCE 3GL0A 2NVFA 2I7FA 2QPZA 3GOBA 3L70E 1SQVE 4NBBD 4NBDD 4AAYB 1SQXE 1VM9A 2Q3WA 5KKZC 3EQQA 1G8JB 3CXHE 4P1BH 1G8KB 4QUPA 3L74E 3VCPA 1O7GA 4P1CH 3L73E 2IBZE 2HMKA 5AEUA 1NYKA 4U3FE 4HM3A 1UUWA 2NVGA 3H1KE 3VMGD 3C0DA 3VMHD 1VCKA 2E74D 4HM2A 2GBWA 2FYUE 3H1LE 4EMJB 1KYOE 2JZAA 3GKEA 5CXMA 2BMQA 1O7HA 4NB9D 2YVJB 1O7NA 1RIEA 2HMNA 2NUMA 1NTKE 2YFIA 3N0QA 2NVEA 2NWFA 1O7WA 4PV1D 1ULIA 1O7MA 2YFLA 1SQQE
chains in the Genus database with same CATH superfamily
3L75E 4QDCA 3BCCE 2NUKA 4NBED 5HL4A 3L71E 3H1JE 3VMID 3GZXA 4QCKA 1NDOA 4PD4E 1O7PA 5AEWA 1PP9E 2HMOA 3D89A 4HM8A 5KLVE 2JO6A 1RFSA 2YFJA 2HMMA 3VCAA 1ZRTE 2B1XA 2A06E 2YIUC 4QDDA 3GCEA 3EN1A 4HM5A 5BOKA 2B24A 3CX5E 3H1HE 2HMLA 4QUQA 4QURA 4NB8D 4QDFA 1NU1E 1Q90C 4AIVA 2CKFA 1ULJA 1PPJE 1SQBE 4H0LD 4OGQD 5KLIC 1NTZE 3CWBE 4HM7A 2BMRA 3GTEA 1UUVA 1SQPE 2E76D 1EG9A 2DE5D 4H44D 2E75D 2ZYLA 3TGUE 1FQTA 2QJKC 2XRXA 2ZT9D 3GB4A 3GL2A 2DE7D 1VF5D 3L72E 4HKVA 4NBCD 1L0LE 3GTSA 1BCCE 1JM1A 2QJPC 2BMOA 2DE6D 2GBXA 3AZCA 1NTME 4HM4A 2E4PA 2E4QA 2D2CD 4HM1A 1BE3E 1SJGA 3DQYA 1EZVE 4HM0A 3GZYA 1WQLA 2FYNC 2HMJA 4NBHD 3FOUA 3H1IE 4NBAD 2QJYC 4H13D 4NBGD 4QDFB 2XR8A 4HJLA 1KB9E 1L0NE 4HM6A 2XSOA 4NBFD 1P84E 2XSHA 2BCCE 3GL0A 2NVFA 2I7FA 2QPZA 3GOBA 3L70E 1SQVE 4NBBD 4NBDD 4AAYB 1SQXE 1VM9A 2Q3WA 5KKZC 3EQQA 1G8JB 3CXHE 4P1BH 1G8KB 4QUPA 3L74E 3VCPA 1O7GA 4P1CH 3L73E 2IBZE 2HMKA 5AEUA 1NYKA 4U3FE 4HM3A 1UUWA 2NVGA 3H1KE 3VMGD 3C0DA 3VMHD 1VCKA 2E74D 4HM2A 2GBWA 2FYUE 3H1LE 4EMJB 1KYOE 2JZAA 3GKEA 5CXMA 2BMQA 1O7HA 4NB9D 2YVJB 1O7NA 1RIEA 2HMNA 2NUMA 1NTKE 2YFIA 3N0QA 2NVEA 2NWFA 1O7WA 4PV1D 1ULIA 1O7MA 2YFLA 1SQQE
chains in the Genus database with same CATH topology
3L75E 4QDCA 3BCCE 2NUKA 4NBED 5HL4A 3L71E 3H1JE 3VMID 3GZXA 4QCKA 1NDOA 4PD4E 1O7PA 5AEWA 1PP9E 2HMOA 3D89A 4HM8A 5KLVE 2JO6A 1RFSA 2YFJA 2HMMA 3VCAA 1ZRTE 2B1XA 2A06E 2YIUC 4QDDA 3GCEA 3EN1A 4HM5A 5BOKA 2B24A 3CX5E 3H1HE 2HMLA 4QUQA 4QURA 4NB8D 4QDFA 1NU1E 1Q90C 4AIVA 2CKFA 1ULJA 1PPJE 1SQBE 4H0LD 4OGQD 5KLIC 1NTZE 3CWBE 4HM7A 2BMRA 3GTEA 1UUVA 1SQPE 2E76D 1EG9A 2DE5D 4H44D 2E75D 2ZYLA 3TGUE 1FQTA 2QJKC 2XRXA 2ZT9D 3GB4A 3GL2A 2DE7D 1VF5D 3L72E 4HKVA 4NBCD 1L0LE 3GTSA 1BCCE 1JM1A 2QJPC 2BMOA 2DE6D 2GBXA 3AZCA 1NTME 4HM4A 2E4PA 2E4QA 2D2CD 4HM1A 1BE3E 1SJGA 3DQYA 1EZVE 4HM0A 3GZYA 1WQLA 2FYNC 2HMJA 4NBHD 3FOUA 3H1IE 4NBAD 2QJYC 4H13D 4NBGD 4QDFB 2XR8A 4HJLA 1KB9E 1L0NE 4HM6A 2XSOA 4NBFD 1P84E 2XSHA 2BCCE 3GL0A 2NVFA 2I7FA 2QPZA 3GOBA 3L70E 1SQVE 4NBBD 4NBDD 4AAYB 1SQXE 1VM9A 2Q3WA 5KKZC 3EQQA 1G8JB 3CXHE 4P1BH 1G8KB 4QUPA 3L74E 3VCPA 1O7GA 4P1CH 3L73E 2IBZE 2HMKA 5AEUA 1NYKA 4U3FE 4HM3A 1UUWA 2NVGA 3H1KE 3VMGD 3C0DA 3VMHD 1VCKA 2E74D 4HM2A 2GBWA 2FYUE 3H1LE 4EMJB 1KYOE 2JZAA 3GKEA 5CXMA 2BMQA 1O7HA 4NB9D 2YVJB 1O7NA 1RIEA 2HMNA 2NUMA 1NTKE 2YFIA 3N0QA 2NVEA 2NWFA 1O7WA 4PV1D 1ULIA 1O7MA 2YFLA 1SQQE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L75 E;  4QDC A;  3BCC E;  2NUK A;  4NBE D;  5HL4 A;  3L71 E;  3H1J E;  3VMI D;  3GZX A;  4QCK A;  1NDO A;  4PD4 E;  1O7P A;  5AEW A;  1PP9 E;  2HMO A;  3D89 A;  4HM8 A;  5KLV E;  2JO6 A;  1RFS A;  2YFJ A;  2HMM A;  3VCA A;  1ZRT E;  2B1X A;  2A06 E;  2YIU C;  4QDD A;  3GCE A;  3EN1 A;  4HM5 A;  5BOK A;  2B24 A;  3CX5 E;  3H1H E;  2HML A;  4QUQ A;  4QUR A;  4NB8 D;  4QDF A;  1NU1 E;  1Q90 C;  4AIV A;  2CKF A;  1ULJ A;  1PPJ E;  1SQB E;  4H0L D;  4OGQ D;  5KLI C;  1NTZ E;  3CWB E;  4HM7 A;  2BMR A;  3GTE A;  1UUV A;  1SQP E;  2E76 D;  1EG9 A;  2DE5 D;  4H44 D;  2E75 D;  2ZYL A;  3TGU E;  1FQT A;  2QJK C;  2XRX A;  2ZT9 D;  3GB4 A;  3GL2 A;  2DE7 D;  1VF5 D;  3L72 E;  4HKV A;  4NBC D;  1L0L E;  3GTS A;  1BCC E;  1JM1 A;  2QJP C;  2BMO A;  2DE6 D;  2GBX A;  3AZC A;  1NTM E;  4HM4 A;  2E4P A;  2E4Q A;  2D2C D;  4HM1 A;  1BE3 E;  1SJG A;  3DQY A;  1EZV E;  4HM0 A;  3GZY A;  1WQL A;  2FYN C;  2HMJ A;  4NBH D;  3FOU A;  3H1I E;  4NBA D;  2QJY C;  4H13 D;  4NBG D;  4QDF B;  2XR8 A;  4HJL A;  1KB9 E;  1L0N E;  4HM6 A;  2XSO A;  4NBF D;  1P84 E;  2XSH A;  2BCC E;  3GL0 A;  2NVF A;  2I7F A;  2QPZ A;  3GOB A;  3L70 E;  1SQV E;  4NBB D;  4NBD D;  4AAY B;  1SQX E;  1VM9 A;  2Q3W A;  5KKZ C;  3EQQ A;  1G8J B;  3CXH E;  4P1B H;  1G8K B;  4QUP A;  3L74 E;  3VCP A;  1O7G A;  4P1C H;  3L73 E;  2IBZ E;  2HMK A;  5AEU A;  1NYK A;  4U3F E;  4HM3 A;  1UUW A;  2NVG A;  3H1K E;  3VMG D;  3C0D A;  3VMH D;  1VCK A;  2E74 D;  4HM2 A;  2GBW A;  2FYU E;  3H1L E;  4EMJ B;  1KYO E;  2JZA A;  3GKE A;  5CXM A;  2BMQ A;  1O7H A;  4NB9 D;  2YVJ B;  1O7N A;  1RIE A;  2HMN A;  2NUM A;  1NTK E;  2YFI A;  3N0Q A;  2NVE A;  2NWF A;  1O7W A;  4PV1 D;  1ULI A;  1O7M A;  2YFL A;  1SQQ E; 
#chains in the Genus database with same CATH topology
 3L75 E;  4QDC A;  3BCC E;  2NUK A;  4NBE D;  5HL4 A;  3L71 E;  3H1J E;  3VMI D;  3GZX A;  4QCK A;  1NDO A;  4PD4 E;  1O7P A;  5AEW A;  1PP9 E;  2HMO A;  3D89 A;  4HM8 A;  5KLV E;  2JO6 A;  1RFS A;  2YFJ A;  2HMM A;  3VCA A;  1ZRT E;  2B1X A;  2A06 E;  2YIU C;  4QDD A;  3GCE A;  3EN1 A;  4HM5 A;  5BOK A;  2B24 A;  3CX5 E;  3H1H E;  2HML A;  4QUQ A;  4QUR A;  4NB8 D;  4QDF A;  1NU1 E;  1Q90 C;  4AIV A;  2CKF A;  1ULJ A;  1PPJ E;  1SQB E;  4H0L D;  4OGQ D;  5KLI C;  1NTZ E;  3CWB E;  4HM7 A;  2BMR A;  3GTE A;  1UUV A;  1SQP E;  2E76 D;  1EG9 A;  2DE5 D;  4H44 D;  2E75 D;  2ZYL A;  3TGU E;  1FQT A;  2QJK C;  2XRX A;  2ZT9 D;  3GB4 A;  3GL2 A;  2DE7 D;  1VF5 D;  3L72 E;  4HKV A;  4NBC D;  1L0L E;  3GTS A;  1BCC E;  1JM1 A;  2QJP C;  2BMO A;  2DE6 D;  2GBX A;  3AZC A;  1NTM E;  4HM4 A;  2E4P A;  2E4Q A;  2D2C D;  4HM1 A;  1BE3 E;  1SJG A;  3DQY A;  1EZV E;  4HM0 A;  3GZY A;  1WQL A;  2FYN C;  2HMJ A;  4NBH D;  3FOU A;  3H1I E;  4NBA D;  2QJY C;  4H13 D;  4NBG D;  4QDF B;  2XR8 A;  4HJL A;  1KB9 E;  1L0N E;  4HM6 A;  2XSO A;  4NBF D;  1P84 E;  2XSH A;  2BCC E;  3GL0 A;  2NVF A;  2I7F A;  2QPZ A;  3GOB A;  3L70 E;  1SQV E;  4NBB D;  4NBD D;  4AAY B;  1SQX E;  1VM9 A;  2Q3W A;  5KKZ C;  3EQQ A;  1G8J B;  3CXH E;  4P1B H;  1G8K B;  4QUP A;  3L74 E;  3VCP A;  1O7G A;  4P1C H;  3L73 E;  2IBZ E;  2HMK A;  5AEU A;  1NYK A;  4U3F E;  4HM3 A;  1UUW A;  2NVG A;  3H1K E;  3VMG D;  3C0D A;  3VMH D;  1VCK A;  2E74 D;  4HM2 A;  2GBW A;  2FYU E;  3H1L E;  4EMJ B;  1KYO E;  2JZA A;  3GKE A;  5CXM A;  2BMQ A;  1O7H A;  4NB9 D;  2YVJ B;  1O7N A;  1RIE A;  2HMN A;  2NUM A;  1NTK E;  2YFI A;  3N0Q A;  2NVE A;  2NWF A;  1O7W A;  4PV1 D;  1ULI A;  1O7M A;  2YFL A;  1SQQ E; 
#chains in the Genus database with same CATH homology
 3L75 E;  4QDC A;  3BCC E;  2NUK A;  4NBE D;  5HL4 A;  3L71 E;  3H1J E;  3VMI D;  3GZX A;  4QCK A;  1NDO A;  4PD4 E;  1O7P A;  5AEW A;  1PP9 E;  2HMO A;  3D89 A;  4HM8 A;  5KLV E;  2JO6 A;  1RFS A;  2YFJ A;  2HMM A;  3VCA A;  1ZRT E;  2B1X A;  2A06 E;  2YIU C;  4QDD A;  3GCE A;  3EN1 A;  4HM5 A;  5BOK A;  2B24 A;  3CX5 E;  3H1H E;  2HML A;  4QUQ A;  4QUR A;  4NB8 D;  4QDF A;  1NU1 E;  1Q90 C;  4AIV A;  2CKF A;  1ULJ A;  1PPJ E;  1SQB E;  4H0L D;  4OGQ D;  5KLI C;  1NTZ E;  3CWB E;  4HM7 A;  2BMR A;  3GTE A;  1UUV A;  1SQP E;  2E76 D;  1EG9 A;  2DE5 D;  4H44 D;  2E75 D;  2ZYL A;  3TGU E;  1FQT A;  2QJK C;  2XRX A;  2ZT9 D;  3GB4 A;  3GL2 A;  2DE7 D;  1VF5 D;  3L72 E;  4HKV A;  4NBC D;  1L0L E;  3GTS A;  1BCC E;  1JM1 A;  2QJP C;  2BMO A;  2DE6 D;  2GBX A;  3AZC A;  1NTM E;  4HM4 A;  2E4P A;  2E4Q A;  2D2C D;  4HM1 A;  1BE3 E;  1SJG A;  3DQY A;  1EZV E;  4HM0 A;  3GZY A;  1WQL A;  2FYN C;  2HMJ A;  4NBH D;  3FOU A;  3H1I E;  4NBA D;  2QJY C;  4H13 D;  4NBG D;  4QDF B;  2XR8 A;  4HJL A;  1KB9 E;  1L0N E;  4HM6 A;  2XSO A;  4NBF D;  1P84 E;  2XSH A;  2BCC E;  3GL0 A;  2NVF A;  2I7F A;  2QPZ A;  3GOB A;  3L70 E;  1SQV E;  4NBB D;  4NBD D;  4AAY B;  1SQX E;  1VM9 A;  2Q3W A;  5KKZ C;  3EQQ A;  1G8J B;  3CXH E;  4P1B H;  1G8K B;  4QUP A;  3L74 E;  3VCP A;  1O7G A;  4P1C H;  3L73 E;  2IBZ E;  2HMK A;  5AEU A;  1NYK A;  4U3F E;  4HM3 A;  1UUW A;  2NVG A;  3H1K E;  3VMG D;  3C0D A;  3VMH D;  1VCK A;  2E74 D;  4HM2 A;  2GBW A;  2FYU E;  3H1L E;  4EMJ B;  1KYO E;  2JZA A;  3GKE A;  5CXM A;  2BMQ A;  1O7H A;  4NB9 D;  2YVJ B;  1O7N A;  1RIE A;  2HMN A;  2NUM A;  1NTK E;  2YFI A;  3N0Q A;  2NVE A;  2NWF A;  1O7W A;  4PV1 D;  1ULI A;  1O7M A;  2YFL A;  1SQQ E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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