4EMJB

Complex between the reductase and ferredoxin components of toluene dioxygenase
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHVDLDNGELK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Pseudomonas putida
publication title Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
pubmed doi rcsb
molecule keywords TodA
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4emjB00
2HMKA 2ZT9D 3DQYA 4HM3A 4NBAD 1VM9A 2A06E 4PV1D 2BMQA 1WQLA 2GBWA 3GTEA 4NB9D 2NUKA 2D2CD 3H1LE 4H0LD 4HM7A 2NUMA 3EQQA 3VCAA 2I7FA 4HM5A 2YFIA 4QDFB 2QJYC 1NTME 1SQVE 2DE5D 3H1HE 3H1IE 4QURA 1O7MA 3D89A 5KLVE 2E75D 3AZCA 2XRXA 1NTZE 2YFLA 1EZVE 4QUPA 3GL2A 3TGUE 1L0LE 4QDCA 4NBHD 4NBDD 4NB8D 2XR8A 1FQTA 4HM8A 4HJLA 2E76D 2HMLA 1NDOA 2XSHA 3H1KE 4P1BH 4EMJB 3VMGD 5BOKA 1ULJA 3N0QA 1VF5D 1NTKE 4HM1A 1PPJE 1VCKA 3VMHD 3C0DA 2ZYLA 1BCCE 3CX5E 3L74E 1O7HA 2XSOA 2QJKC 2NWFA 3VMID 2JZAA 4NBFD 4NBCD 1RIEA 2E4PA 1O7PA 2GBXA 3GZYA 4AAYB 3L73E 1G8JB 1UUWA 5KLIC 4HKVA 1SJGA 2QPZA 4HM0A 3CWBE 4PD4E 3CXHE 4HM4A 2DE7D 4OGQD 2FYUE 4AIVA 2Q3WA 2QJPC 2HMJA 4QUQA 1JM1A 4QDDA 1BE3E 1KB9E 1EG9A 1O7WA 4HM6A 1SQPE 3GCEA 1O7NA 1RFSA 2CKFA 3GZXA 1KYOE 3H1JE 4QDFA 2HMMA 2JO6A 2HMNA 2YVJB 4NBGD 2E74D 2B1XA 3VCPA 1PP9E 1NYKA 1ZRTE 1UUVA 5HL4A 1O7GA 1G8KB 2YFJA 4U3FE 5AEWA 1SQQE 3FOUA 4HM2A 5KKZC 1L0NE 2NVEA 4NBBD 3L72E 2B24A 2BMOA 3GTSA 4QCKA 2DE6D 5CXMA 2YIUC 3L75E 3GB4A 1ULIA 2E4QA 4NBED 2NVFA 1P84E 3GL0A 2BMRA 1SQXE 2BCCE 2NVGA 4P1CH 1SQBE 3EN1A 4H13D 2HMOA 3L71E 5AEUA 3BCCE 4H44D 3GOBA 1NU1E 3L70E 3GKEA 1Q90C 2IBZE 2FYNC
chains in the Genus database with same CATH superfamily
2HMKA 2ZT9D 3DQYA 4HM3A 4NBAD 1VM9A 2A06E 4PV1D 2BMQA 1WQLA 2GBWA 3GTEA 4NB9D 2NUKA 2D2CD 3H1LE 4H0LD 4HM7A 2NUMA 3EQQA 3VCAA 2I7FA 4HM5A 2YFIA 4QDFB 2QJYC 1NTME 1SQVE 2DE5D 3H1HE 3H1IE 4QURA 1O7MA 3D89A 5KLVE 2E75D 3AZCA 2XRXA 1NTZE 2YFLA 1EZVE 4QUPA 3GL2A 3TGUE 1L0LE 4QDCA 4NBHD 4NBDD 4NB8D 2XR8A 1FQTA 4HM8A 4HJLA 2E76D 2HMLA 1NDOA 2XSHA 3H1KE 4P1BH 4EMJB 3VMGD 5BOKA 1ULJA 3N0QA 1VF5D 1NTKE 4HM1A 1PPJE 1VCKA 3VMHD 3C0DA 2ZYLA 1BCCE 3CX5E 3L74E 1O7HA 2XSOA 2QJKC 2NWFA 3VMID 2JZAA 4NBFD 4NBCD 1RIEA 2E4PA 1O7PA 2GBXA 3GZYA 4AAYB 3L73E 1G8JB 1UUWA 5KLIC 4HKVA 1SJGA 2QPZA 4HM0A 3CWBE 4PD4E 3CXHE 4HM4A 2DE7D 4OGQD 2FYUE 4AIVA 2Q3WA 2QJPC 2HMJA 4QUQA 1JM1A 4QDDA 1BE3E 1KB9E 1EG9A 1O7WA 4HM6A 1SQPE 3GCEA 1O7NA 1RFSA 2CKFA 3GZXA 1KYOE 3H1JE 4QDFA 2HMMA 2JO6A 2HMNA 2YVJB 4NBGD 2E74D 2B1XA 3VCPA 1PP9E 1NYKA 1ZRTE 1UUVA 5HL4A 1O7GA 1G8KB 2YFJA 4U3FE 5AEWA 1SQQE 3FOUA 4HM2A 5KKZC 1L0NE 2NVEA 4NBBD 3L72E 2B24A 2BMOA 3GTSA 4QCKA 2DE6D 5CXMA 2YIUC 3L75E 3GB4A 1ULIA 2E4QA 4NBED 2NVFA 1P84E 3GL0A 2BMRA 1SQXE 2BCCE 2NVGA 4P1CH 1SQBE 3EN1A 4H13D 2HMOA 3L71E 5AEUA 3BCCE 4H44D 3GOBA 1NU1E 3L70E 3GKEA 1Q90C 2IBZE 2FYNC
chains in the Genus database with same CATH topology
2HMKA 2ZT9D 3DQYA 4HM3A 4NBAD 1VM9A 2A06E 4PV1D 2BMQA 1WQLA 2GBWA 3GTEA 4NB9D 2NUKA 2D2CD 3H1LE 4H0LD 4HM7A 2NUMA 3EQQA 3VCAA 2I7FA 4HM5A 2YFIA 4QDFB 2QJYC 1NTME 1SQVE 2DE5D 3H1HE 3H1IE 4QURA 1O7MA 3D89A 5KLVE 2E75D 3AZCA 2XRXA 1NTZE 2YFLA 1EZVE 4QUPA 3GL2A 3TGUE 1L0LE 4QDCA 4NBHD 4NBDD 4NB8D 2XR8A 1FQTA 4HM8A 4HJLA 2E76D 2HMLA 1NDOA 2XSHA 3H1KE 4P1BH 4EMJB 3VMGD 5BOKA 1ULJA 3N0QA 1VF5D 1NTKE 4HM1A 1PPJE 1VCKA 3VMHD 3C0DA 2ZYLA 1BCCE 3CX5E 3L74E 1O7HA 2XSOA 2QJKC 2NWFA 3VMID 2JZAA 4NBFD 4NBCD 1RIEA 2E4PA 1O7PA 2GBXA 3GZYA 4AAYB 3L73E 1G8JB 1UUWA 5KLIC 4HKVA 1SJGA 2QPZA 4HM0A 3CWBE 4PD4E 3CXHE 4HM4A 2DE7D 4OGQD 2FYUE 4AIVA 2Q3WA 2QJPC 2HMJA 4QUQA 1JM1A 4QDDA 1BE3E 1KB9E 1EG9A 1O7WA 4HM6A 1SQPE 3GCEA 1O7NA 1RFSA 2CKFA 3GZXA 1KYOE 3H1JE 4QDFA 2HMMA 2JO6A 2HMNA 2YVJB 4NBGD 2E74D 2B1XA 3VCPA 1PP9E 1NYKA 1ZRTE 1UUVA 5HL4A 1O7GA 1G8KB 2YFJA 4U3FE 5AEWA 1SQQE 3FOUA 4HM2A 5KKZC 1L0NE 2NVEA 4NBBD 3L72E 2B24A 2BMOA 3GTSA 4QCKA 2DE6D 5CXMA 2YIUC 3L75E 3GB4A 1ULIA 2E4QA 4NBED 2NVFA 1P84E 3GL0A 2BMRA 1SQXE 2BCCE 2NVGA 4P1CH 1SQBE 3EN1A 4H13D 2HMOA 3L71E 5AEUA 3BCCE 4H44D 3GOBA 1NU1E 3L70E 3GKEA 1Q90C 2IBZE 2FYNC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HMK A;  2ZT9 D;  3DQY A;  4HM3 A;  4NBA D;  1VM9 A;  2A06 E;  4PV1 D;  2BMQ A;  1WQL A;  2GBW A;  3GTE A;  4NB9 D;  2NUK A;  2D2C D;  3H1L E;  4H0L D;  4HM7 A;  2NUM A;  3EQQ A;  3VCA A;  2I7F A;  4HM5 A;  2YFI A;  4QDF B;  2QJY C;  1NTM E;  1SQV E;  2DE5 D;  3H1H E;  3H1I E;  4QUR A;  1O7M A;  3D89 A;  5KLV E;  2E75 D;  3AZC A;  2XRX A;  1NTZ E;  2YFL A;  1EZV E;  4QUP A;  3GL2 A;  3TGU E;  1L0L E;  4QDC A;  4NBH D;  4NBD D;  4NB8 D;  2XR8 A;  1FQT A;  4HM8 A;  4HJL A;  2E76 D;  2HML A;  1NDO A;  2XSH A;  3H1K E;  4P1B H;  4EMJ B;  3VMG D;  5BOK A;  1ULJ A;  3N0Q A;  1VF5 D;  1NTK E;  4HM1 A;  1PPJ E;  1VCK A;  3VMH D;  3C0D A;  2ZYL A;  1BCC E;  3CX5 E;  3L74 E;  1O7H A;  2XSO A;  2QJK C;  2NWF A;  3VMI D;  2JZA A;  4NBF D;  4NBC D;  1RIE A;  2E4P A;  1O7P A;  2GBX A;  3GZY A;  4AAY B;  3L73 E;  1G8J B;  1UUW A;  5KLI C;  4HKV A;  1SJG A;  2QPZ A;  4HM0 A;  3CWB E;  4PD4 E;  3CXH E;  4HM4 A;  2DE7 D;  4OGQ D;  2FYU E;  4AIV A;  2Q3W A;  2QJP C;  2HMJ A;  4QUQ A;  1JM1 A;  4QDD A;  1BE3 E;  1KB9 E;  1EG9 A;  1O7W A;  4HM6 A;  1SQP E;  3GCE A;  1O7N A;  1RFS A;  2CKF A;  3GZX A;  1KYO E;  3H1J E;  4QDF A;  2HMM A;  2JO6 A;  2HMN A;  2YVJ B;  4NBG D;  2E74 D;  2B1X A;  3VCP A;  1PP9 E;  1NYK A;  1ZRT E;  1UUV A;  5HL4 A;  1O7G A;  1G8K B;  2YFJ A;  4U3F E;  5AEW A;  1SQQ E;  3FOU A;  4HM2 A;  5KKZ C;  1L0N E;  2NVE A;  4NBB D;  3L72 E;  2B24 A;  2BMO A;  3GTS A;  4QCK A;  2DE6 D;  5CXM A;  2YIU C;  3L75 E;  3GB4 A;  1ULI A;  2E4Q A;  4NBE D;  2NVF A;  1P84 E;  3GL0 A;  2BMR A;  1SQX E;  2BCC E;  2NVG A;  4P1C H;  1SQB E;  3EN1 A;  4H13 D;  2HMO A;  3L71 E;  5AEU A;  3BCC E;  4H44 D;  3GOB A;  1NU1 E;  3L70 E;  3GKE A;  1Q90 C;  2IBZ E;  2FYN C; 
#chains in the Genus database with same CATH topology
 2HMK A;  2ZT9 D;  3DQY A;  4HM3 A;  4NBA D;  1VM9 A;  2A06 E;  4PV1 D;  2BMQ A;  1WQL A;  2GBW A;  3GTE A;  4NB9 D;  2NUK A;  2D2C D;  3H1L E;  4H0L D;  4HM7 A;  2NUM A;  3EQQ A;  3VCA A;  2I7F A;  4HM5 A;  2YFI A;  4QDF B;  2QJY C;  1NTM E;  1SQV E;  2DE5 D;  3H1H E;  3H1I E;  4QUR A;  1O7M A;  3D89 A;  5KLV E;  2E75 D;  3AZC A;  2XRX A;  1NTZ E;  2YFL A;  1EZV E;  4QUP A;  3GL2 A;  3TGU E;  1L0L E;  4QDC A;  4NBH D;  4NBD D;  4NB8 D;  2XR8 A;  1FQT A;  4HM8 A;  4HJL A;  2E76 D;  2HML A;  1NDO A;  2XSH A;  3H1K E;  4P1B H;  4EMJ B;  3VMG D;  5BOK A;  1ULJ A;  3N0Q A;  1VF5 D;  1NTK E;  4HM1 A;  1PPJ E;  1VCK A;  3VMH D;  3C0D A;  2ZYL A;  1BCC E;  3CX5 E;  3L74 E;  1O7H A;  2XSO A;  2QJK C;  2NWF A;  3VMI D;  2JZA A;  4NBF D;  4NBC D;  1RIE A;  2E4P A;  1O7P A;  2GBX A;  3GZY A;  4AAY B;  3L73 E;  1G8J B;  1UUW A;  5KLI C;  4HKV A;  1SJG A;  2QPZ A;  4HM0 A;  3CWB E;  4PD4 E;  3CXH E;  4HM4 A;  2DE7 D;  4OGQ D;  2FYU E;  4AIV A;  2Q3W A;  2QJP C;  2HMJ A;  4QUQ A;  1JM1 A;  4QDD A;  1BE3 E;  1KB9 E;  1EG9 A;  1O7W A;  4HM6 A;  1SQP E;  3GCE A;  1O7N A;  1RFS A;  2CKF A;  3GZX A;  1KYO E;  3H1J E;  4QDF A;  2HMM A;  2JO6 A;  2HMN A;  2YVJ B;  4NBG D;  2E74 D;  2B1X A;  3VCP A;  1PP9 E;  1NYK A;  1ZRT E;  1UUV A;  5HL4 A;  1O7G A;  1G8K B;  2YFJ A;  4U3F E;  5AEW A;  1SQQ E;  3FOU A;  4HM2 A;  5KKZ C;  1L0N E;  2NVE A;  4NBB D;  3L72 E;  2B24 A;  2BMO A;  3GTS A;  4QCK A;  2DE6 D;  5CXM A;  2YIU C;  3L75 E;  3GB4 A;  1ULI A;  2E4Q A;  4NBE D;  2NVF A;  1P84 E;  3GL0 A;  2BMR A;  1SQX E;  2BCC E;  2NVG A;  4P1C H;  1SQB E;  3EN1 A;  4H13 D;  2HMO A;  3L71 E;  5AEU A;  3BCC E;  4H44 D;  3GOB A;  1NU1 E;  3L70 E;  3GKE A;  1Q90 C;  2IBZ E;  2FYN C; 
#chains in the Genus database with same CATH homology
 2HMK A;  2ZT9 D;  3DQY A;  4HM3 A;  4NBA D;  1VM9 A;  2A06 E;  4PV1 D;  2BMQ A;  1WQL A;  2GBW A;  3GTE A;  4NB9 D;  2NUK A;  2D2C D;  3H1L E;  4H0L D;  4HM7 A;  2NUM A;  3EQQ A;  3VCA A;  2I7F A;  4HM5 A;  2YFI A;  4QDF B;  2QJY C;  1NTM E;  1SQV E;  2DE5 D;  3H1H E;  3H1I E;  4QUR A;  1O7M A;  3D89 A;  5KLV E;  2E75 D;  3AZC A;  2XRX A;  1NTZ E;  2YFL A;  1EZV E;  4QUP A;  3GL2 A;  3TGU E;  1L0L E;  4QDC A;  4NBH D;  4NBD D;  4NB8 D;  2XR8 A;  1FQT A;  4HM8 A;  4HJL A;  2E76 D;  2HML A;  1NDO A;  2XSH A;  3H1K E;  4P1B H;  4EMJ B;  3VMG D;  5BOK A;  1ULJ A;  3N0Q A;  1VF5 D;  1NTK E;  4HM1 A;  1PPJ E;  1VCK A;  3VMH D;  3C0D A;  2ZYL A;  1BCC E;  3CX5 E;  3L74 E;  1O7H A;  2XSO A;  2QJK C;  2NWF A;  3VMI D;  2JZA A;  4NBF D;  4NBC D;  1RIE A;  2E4P A;  1O7P A;  2GBX A;  3GZY A;  4AAY B;  3L73 E;  1G8J B;  1UUW A;  5KLI C;  4HKV A;  1SJG A;  2QPZ A;  4HM0 A;  3CWB E;  4PD4 E;  3CXH E;  4HM4 A;  2DE7 D;  4OGQ D;  2FYU E;  4AIV A;  2Q3W A;  2QJP C;  2HMJ A;  4QUQ A;  1JM1 A;  4QDD A;  1BE3 E;  1KB9 E;  1EG9 A;  1O7W A;  4HM6 A;  1SQP E;  3GCE A;  1O7N A;  1RFS A;  2CKF A;  3GZX A;  1KYO E;  3H1J E;  4QDF A;  2HMM A;  2JO6 A;  2HMN A;  2YVJ B;  4NBG D;  2E74 D;  2B1X A;  3VCP A;  1PP9 E;  1NYK A;  1ZRT E;  1UUV A;  5HL4 A;  1O7G A;  1G8K B;  2YFJ A;  4U3F E;  5AEW A;  1SQQ E;  3FOU A;  4HM2 A;  5KKZ C;  1L0N E;  2NVE A;  4NBB D;  3L72 E;  2B24 A;  2BMO A;  3GTS A;  4QCK A;  2DE6 D;  5CXM A;  2YIU C;  3L75 E;  3GB4 A;  1ULI A;  2E4Q A;  4NBE D;  2NVF A;  1P84 E;  3GL0 A;  2BMR A;  1SQX E;  2BCC E;  2NVG A;  4P1C H;  1SQB E;  3EN1 A;  4H13 D;  2HMO A;  3L71 E;  5AEU A;  3BCC E;  4H44 D;  3GOB A;  1NU1 E;  3L70 E;  3GKE A;  1Q90 C;  2IBZ E;  2FYN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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