4EMXA

Crystal structure analysis of human serum albumin in complex with chloride anions at cryogenic temperature
Total Genus 226
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
226
sequence length
581
structure length
581
Chain Sequence
AHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Serum albumin
publication title New insights on B factors in crystal structure analysis and crystallographic model refinement
rcsb
total genus 226
structure length 581
sequence length 581
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA06
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA05
4G04A 5IIHA 2BXMA 4LUFA 1E7AA 2BXCA 5HOZA 5ID7A 2XVQA 1HK4A 2BXFA 2BXOA 3UIVA 1BKEA 1E7EA 4HGKA 4K2CA 3SQJA 2BXEA 1E7HA 1HK2A 4PO0A 4F5TA 3LU6A 2BXNA 1KW2A 1UORA 3V03A 5IJ5A 3LU7A 3B9MA 4LA0A 4L9QA 2VUEA 3CX9A 2BXGA 1GNIA 2VUFA 3JRYA 1E78A 2VDBA 2YDFA 2I30A 1BJ5A 1BM0A 2BXQA 4JK4A 1E7CA 4IW2A 5DBYA 3A73A 1J7EA 2BXDA 4F5VA 4EMXA 2BXKA 4N0FD 1KXPD 2BXPA 2XSIA 2I2ZA 1MA9A 4LUHA 2XVVA 1HK5A 3JQZA 4OT2A 2XW0A 1HA2A 1HK1A 4LB9A 4LB2A 3V09A 1LOTA 5GHKA 5IIUA 1E7IA 3B9LA 2BXIA 3TDLA 1GNJA 4J2VA 4F5SA 4E99A 4N0UD 5IIXA 4G03A 2BXLA 4L9KA 4ZBRA 4BKEA 5ID9A 3LU8A 1E7FA 3V08A 4OR0A 1J78A 4HGMB 5DQFA 4IW1A 4L8UA 4ZBQA 2BXAA 2BXHA 2XW1A 4K71A 4S1YA 2XVUA 5IJFA 1O9XA 2BX8A 1E7BA 1H9ZA 4Z69A 2XVWA 5IJEA 1E7GA 4F5UA 1TF0A 2BXBA 5FUOA 1HK3A 1AO6A 1N5UA 5IFOA
chains in the Genus database with same CATH superfamily
4G04A 5IIHA 2BXMA 4LUFA 4GDLB 1E7AA 2BXCA 3A75A 1MIVA 2Z8JA 5HOZA 2EFEA 1VFIA 3WHQA 3FNMA 2OT3A 4NAWB 2XVQA 5ID7A 1HK4A 2BXFA 2BXOA 3UIVA 2V36A 4ZC6A 1BKEA 3FWCC 1E7EA 4HGKA 1KDXA 4K2CA 3SQJA 1MM8A 2QM6A 2BXEA 1E7HA 1HK2A 4PO0A 4F5TA 2GUTA 3LU6A 2BXNA 1KW2A 1UORA 2ROHA 3V03A 5IJ5A 3LU7A 3MHSB 3WHSA 3B9MA 2DYOA 4GDXA 4LA0A 3SIUB 4L9QA 2VUEA 2XMOA 3CX9A 2BXGA 2KBZA 1GNIA 1SB0A 1LNSA 4DM0A 2VUFA 3JRYA 1E78A 2VDBA 2YDFA 2I30A 3ICXA 3W1SA 1BJ5A 4M70B 1BM0A 4ZBKA 4MBEC 3NVKA 4ZCGA 2DBWA 2EFHA 2AGHB 2BXQA 4JK4A 1E7CA 4GDKB 4OTTA 4IW2A 5DBYA 2DYMA 3A73A 2DBXA 5GIPA 3H37A 3NVMA 1J7EA 2BXDA 3H3AA 4F5VA 4EMXA 5GIOA 1MIYA 3FWBC 3G9KD 2BXKA 4N0FD 1MUSA 1KXPD 2QHBA 2BXPA 2XSIA 1FOUA 2I2ZA 1MA9A 2K0NA 4LUHA 1MUHA 2XVVA 1HK5A 2CKXA 3JQZA 4TQ1A 2DBUA 4N3ZA 4OT2A 2XW0A 4Z9OA 2LOQA 4W4UB 3PLAA 4ZUXV 1HA2A 1HK1A 4LB9A 4LB2A 3V09A 4C31B 3GQUA 2Z8KA 1LOTA 5GHKA 2E0XA 5IIUA 4TQ0A 1E7IA 1NT2B 3B9LA 4FK5B 2KWFA 1TXUA 2BXIA 2NNWA 3TDLA 2LQIA 1GNJA 3KIKA 4J2VA 4I9OA 3VQIA 4F5SA 2LQHA 4E99A 4FIPB 4FJCB 1H5WA 4G01A 4DHXB 1JNBA 4N0UD 1VZSA 3SIVB 5IIXA 4G03A 2BXLA 2Z8IA 5B5TA 2LXTA 5GINA 4BY9C 3BPJA 3KJLA 4L9KA 4ZBRA 4BKEA 5ID9A 4GG2A 4WA6B 3WHRA 3LU8A 1E7FA 2QMCA 3V08A 4OR0A 4D7XA 3NVIA 1J78A 4HGMB 4OTUA 5DQFA 3ECPA 4IW1A 4L8UA 3MHHB 4ZBQA 2BXAA 2BXHA 2XW1A 4K71A 2LXSA 4S1YA 2XVUA 2AJEA 5IJFA 2EFDA 2JUHA 3GA9L 5D7GA 1O9XA 2BX8A 1E7BA 2DG5A 2NQOA 1H9ZA 2E0YA 4Z69A 3NMUA 2OZBB 5BPKA 2EFCA 1MIWA 2XVWA 1E7GA 5IJEA 4F5UA 1TF0A 2BXBA 3M99C 5FUOA 3GQXA 1HK3A 1AO6A 1N5UA 1IJGA 5IFOA
chains in the Genus database with same CATH topology
4G04A 5IIHA 2BXMA 4LUFA 4GDLB 1E7AA 2BXCA 3A75A 1MIVA 2Z8JA 5HOZA 2EFEA 1VFIA 3WHQA 3FNMA 2OT3A 4NAWB 2XVQA 5ID7A 1HK4A 2BXFA 2BXOA 3UIVA 2V36A 4ZC6A 1BKEA 3FWCC 1E7EA 4HGKA 4K2CA 3SQJA 2QM6A 2BXEA 1E7HA 1HK2A 4PO0A 4F5TA 3LU6A 2BXNA 1KW2A 1UORA 2ROHA 3V03A 5IJ5A 3LU7A 3MHSB 3WHSA 3B9MA 2DYOA 4GDXA 4LA0A 3SIUB 4L9QA 2VUEA 2XMOA 3CX9A 2BXGA 2KBZA 1GNIA 1LNSA 2VUFA 3JRYA 1E78A 2VDBA 2YDFA 2I30A 3ICXA 3W1SA 1BJ5A 4M70B 1BM0A 4ZBKA 4MBEC 3NVKA 4ZCGA 2DBWA 2EFHA 2BXQA 4JK4A 1E7CA 4GDKB 4OTTA 4IW2A 5DBYA 2DYMA 3A73A 2DBXA 5GIPA 3H37A 3NVMA 1J7EA 2BXDA 3H3AA 4F5VA 4EMXA 5GIOA 1MIYA 3FWBC 3G9KD 2BXKA 4N0FD 1KXPD 2QHBA 2BXPA 2XSIA 1FOUA 2I2ZA 1MA9A 4LUHA 2XVVA 1HK5A 2CKXA 3JQZA 4TQ1A 2DBUA 4N3ZA 4OT2A 2XW0A 4Z9OA 2LOQA 4W4UB 3PLAA 4ZUXV 1HA2A 1HK1A 4LB9A 4LB2A 3V09A 4C31B 3GQUA 2Z8KA 1LOTA 5GHKA 2E0XA 5IIUA 4TQ0A 1E7IA 1NT2B 3B9LA 4FK5B 1TXUA 2BXIA 2NNWA 3TDLA 3KIKA 1GNJA 4J2VA 4F5SA 3VQIA 4E99A 4FIPB 4FJCB 1H5WA 4G01A 4DHXB 1JNBA 4N0UD 1VZSA 3SIVB 5IIXA 4G03A 2BXLA 2Z8IA 5B5TA 5GINA 4BY9C 3KJLA 4L9KA 4ZBRA 4BKEA 5ID9A 4GG2A 4WA6B 3WHRA 3LU8A 1E7FA 2QMCA 3V08A 4OR0A 3NVIA 1J78A 4HGMB 4OTUA 5DQFA 4IW1A 4L8UA 3MHHB 4ZBQA 2BXAA 2BXHA 2XW1A 4K71A 4S1YA 2XVUA 2AJEA 5IJFA 2EFDA 2JUHA 3GA9L 5D7GA 1O9XA 2BX8A 1E7BA 2DG5A 2NQOA 1H9ZA 2E0YA 4Z69A 3NMUA 2OZBB 5BPKA 2EFCA 1MIWA 2XVWA 1E7GA 5IJEA 4F5UA 1TF0A 2BXBA 3M99C 5FUOA 3GQXA 1HK3A 1AO6A 1N5UA 1IJGA 5IFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G04 A;  5IIH A;  2BXM A;  4LUF A;  1E7A A;  2BXC A;  5HOZ A;  5ID7 A;  2XVQ A;  1HK4 A;  2BXF A;  2BXO A;  3UIV A;  1BKE A;  1E7E A;  4HGK A;  4K2C A;  3SQJ A;  2BXE A;  1E7H A;  1HK2 A;  4PO0 A;  4F5T A;  3LU6 A;  2BXN A;  1KW2 A;  1UOR A;  3V03 A;  5IJ5 A;  3LU7 A;  3B9M A;  4LA0 A;  4L9Q A;  2VUE A;  3CX9 A;  2BXG A;  1GNI A;  2VUF A;  3JRY A;  1E78 A;  2VDB A;  2YDF A;  2I30 A;  1BJ5 A;  1BM0 A;  2BXQ A;  4JK4 A;  1E7C A;  4IW2 A;  5DBY A;  3A73 A;  1J7E A;  2BXD A;  4F5V A;  4EMX A;  2BXK A;  4N0F D;  1KXP D;  2BXP A;  2XSI A;  2I2Z A;  1MA9 A;  4LUH A;  2XVV A;  1HK5 A;  3JQZ A;  4OT2 A;  2XW0 A;  1HA2 A;  1HK1 A;  4LB9 A;  4LB2 A;  3V09 A;  1LOT A;  5GHK A;  5IIU A;  1E7I A;  3B9L A;  2BXI A;  3TDL A;  1GNJ A;  4J2V A;  4F5S A;  4E99 A;  4N0U D;  5IIX A;  4G03 A;  2BXL A;  4L9K A;  4ZBR A;  4BKE A;  5ID9 A;  3LU8 A;  1E7F A;  3V08 A;  4OR0 A;  1J78 A;  4HGM B;  5DQF A;  4IW1 A;  4L8U A;  4ZBQ A;  2BXA A;  2BXH A;  2XW1 A;  4K71 A;  4S1Y A;  2XVU A;  5IJF A;  1O9X A;  2BX8 A;  1E7B A;  1H9Z A;  4Z69 A;  2XVW A;  5IJE A;  1E7G A;  4F5U A;  1TF0 A;  2BXB A;  5FUO A;  1HK3 A;  1AO6 A;  1N5U A;  5IFO A; 
#chains in the Genus database with same CATH topology
 4G04 A;  5IIH A;  2BXM A;  4LUF A;  4GDL B;  1E7A A;  2BXC A;  3A75 A;  1MIV A;  2Z8J A;  5HOZ A;  2EFE A;  1VFI A;  3WHQ A;  3FNM A;  2OT3 A;  4NAW B;  2XVQ A;  5ID7 A;  1HK4 A;  2BXF A;  2BXO A;  3UIV A;  2V36 A;  4ZC6 A;  1BKE A;  3FWC C;  1E7E A;  4HGK A;  1KDX A;  4K2C A;  3SQJ A;  1MM8 A;  2QM6 A;  2BXE A;  1E7H A;  1HK2 A;  4PO0 A;  4F5T A;  2GUT A;  3LU6 A;  2BXN A;  1KW2 A;  1UOR A;  2ROH A;  3V03 A;  5IJ5 A;  3LU7 A;  3MHS B;  3WHS A;  3B9M A;  2DYO A;  4GDX A;  4LA0 A;  3SIU B;  4L9Q A;  2VUE A;  2XMO A;  3CX9 A;  2BXG A;  2KBZ A;  1GNI A;  1SB0 A;  1LNS A;  4DM0 A;  2VUF A;  3JRY A;  1E78 A;  2VDB A;  2YDF A;  2I30 A;  3ICX A;  3W1S A;  1BJ5 A;  4M70 B;  1BM0 A;  4ZBK A;  4MBE C;  3NVK A;  4ZCG A;  2DBW A;  2EFH A;  2AGH B;  2BXQ A;  4JK4 A;  1E7C A;  4GDK B;  4OTT A;  4IW2 A;  5DBY A;  2DYM A;  3A73 A;  2DBX A;  5GIP A;  3H37 A;  3NVM A;  1J7E A;  2BXD A;  3H3A A;  4F5V A;  4EMX A;  5GIO A;  1MIY A;  3FWB C;  3G9K D;  2BXK A;  4N0F D;  1MUS A;  1KXP D;  2QHB A;  2BXP A;  2XSI A;  1FOU A;  2I2Z A;  1MA9 A;  2K0N A;  4LUH A;  1MUH A;  2XVV A;  1HK5 A;  2CKX A;  3JQZ A;  4TQ1 A;  2DBU A;  4N3Z A;  4OT2 A;  2XW0 A;  4Z9O A;  2LOQ A;  4W4U B;  3PLA A;  4ZUX V;  1HA2 A;  1HK1 A;  4LB9 A;  4LB2 A;  3V09 A;  4C31 B;  3GQU A;  2Z8K A;  1LOT A;  5GHK A;  2E0X A;  5IIU A;  4TQ0 A;  1E7I A;  1NT2 B;  3B9L A;  4FK5 B;  2KWF A;  1TXU A;  2BXI A;  2NNW A;  3TDL A;  2LQI A;  1GNJ A;  3KIK A;  4J2V A;  4I9O A;  3VQI A;  4F5S A;  2LQH A;  4E99 A;  4FIP B;  4FJC B;  1H5W A;  4G01 A;  4DHX B;  1JNB A;  4N0U D;  1VZS A;  3SIV B;  5IIX A;  4G03 A;  2BXL A;  2Z8I A;  5B5T A;  2LXT A;  5GIN A;  4BY9 C;  3BPJ A;  3KJL A;  4L9K A;  4ZBR A;  4BKE A;  5ID9 A;  4GG2 A;  4WA6 B;  3WHR A;  3LU8 A;  1E7F A;  2QMC A;  3V08 A;  4OR0 A;  4D7X A;  3NVI A;  1J78 A;  4HGM B;  4OTU A;  5DQF A;  3ECP A;  4IW1 A;  4L8U A;  3MHH B;  4ZBQ A;  2BXA A;  2BXH A;  2XW1 A;  4K71 A;  2LXS A;  4S1Y A;  2XVU A;  2AJE A;  5IJF A;  2EFD A;  2JUH A;  3GA9 L;  5D7G A;  1O9X A;  2BX8 A;  1E7B A;  2DG5 A;  2NQO A;  1H9Z A;  2E0Y A;  4Z69 A;  3NMU A;  2OZB B;  5BPK A;  2EFC A;  1MIW A;  2XVW A;  1E7G A;  5IJE A;  4F5U A;  1TF0 A;  2BXB A;  3M99 C;  5FUO A;  3GQX A;  1HK3 A;  1AO6 A;  1N5U A;  1IJG A;  5IFO A; 
#chains in the Genus database with same CATH homology
 4G04 A;  5IIH A;  2BXM A;  4LUF A;  4GDL B;  1E7A A;  2BXC A;  3A75 A;  1MIV A;  2Z8J A;  5HOZ A;  2EFE A;  1VFI A;  3WHQ A;  3FNM A;  2OT3 A;  4NAW B;  2XVQ A;  5ID7 A;  1HK4 A;  2BXF A;  2BXO A;  3UIV A;  2V36 A;  4ZC6 A;  1BKE A;  3FWC C;  1E7E A;  4HGK A;  4K2C A;  3SQJ A;  2QM6 A;  2BXE A;  1E7H A;  1HK2 A;  4PO0 A;  4F5T A;  3LU6 A;  2BXN A;  1KW2 A;  1UOR A;  2ROH A;  3V03 A;  5IJ5 A;  3LU7 A;  3MHS B;  3WHS A;  3B9M A;  2DYO A;  4GDX A;  4LA0 A;  3SIU B;  4L9Q A;  2VUE A;  2XMO A;  3CX9 A;  2BXG A;  2KBZ A;  1GNI A;  1LNS A;  2VUF A;  3JRY A;  1E78 A;  2VDB A;  2YDF A;  2I30 A;  3ICX A;  3W1S A;  1BJ5 A;  4M70 B;  1BM0 A;  4ZBK A;  4MBE C;  3NVK A;  4ZCG A;  2DBW A;  2EFH A;  2BXQ A;  4JK4 A;  1E7C A;  4GDK B;  4OTT A;  4IW2 A;  5DBY A;  2DYM A;  3A73 A;  2DBX A;  5GIP A;  3H37 A;  3NVM A;  1J7E A;  2BXD A;  3H3A A;  4F5V A;  4EMX A;  5GIO A;  1MIY A;  3FWB C;  3G9K D;  2BXK A;  4N0F D;  1KXP D;  2QHB A;  2BXP A;  2XSI A;  1FOU A;  2I2Z A;  1MA9 A;  4LUH A;  2XVV A;  1HK5 A;  2CKX A;  3JQZ A;  4TQ1 A;  2DBU A;  4N3Z A;  4OT2 A;  2XW0 A;  4Z9O A;  2LOQ A;  4W4U B;  3PLA A;  4ZUX V;  1HA2 A;  1HK1 A;  4LB9 A;  4LB2 A;  3V09 A;  4C31 B;  3GQU A;  2Z8K A;  1LOT A;  5GHK A;  2E0X A;  5IIU A;  4TQ0 A;  1E7I A;  1NT2 B;  3B9L A;  4FK5 B;  1TXU A;  2BXI A;  2NNW A;  3TDL A;  3KIK A;  1GNJ A;  4J2V A;  4F5S A;  3VQI A;  4E99 A;  4FIP B;  4FJC B;  1H5W A;  4G01 A;  4DHX B;  1JNB A;  4N0U D;  1VZS A;  3SIV B;  5IIX A;  4G03 A;  2BXL A;  2Z8I A;  5B5T A;  5GIN A;  4BY9 C;  3KJL A;  4L9K A;  4ZBR A;  4BKE A;  5ID9 A;  4GG2 A;  4WA6 B;  3WHR A;  3LU8 A;  1E7F A;  2QMC A;  3V08 A;  4OR0 A;  3NVI A;  1J78 A;  4HGM B;  4OTU A;  5DQF A;  4IW1 A;  4L8U A;  3MHH B;  4ZBQ A;  2BXA A;  2BXH A;  2XW1 A;  4K71 A;  4S1Y A;  2XVU A;  2AJE A;  5IJF A;  2EFD A;  2JUH A;  3GA9 L;  5D7G A;  1O9X A;  2BX8 A;  1E7B A;  2DG5 A;  2NQO A;  1H9Z A;  2E0Y A;  4Z69 A;  3NMU A;  2OZB B;  5BPK A;  2EFC A;  1MIW A;  2XVW A;  1E7G A;  5IJE A;  4F5U A;  1TF0 A;  2BXB A;  3M99 C;  5FUO A;  3GQX A;  1HK3 A;  1AO6 A;  1N5U A;  1IJG A;  5IFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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