4EMXA

Crystal structure analysis of human serum albumin in complex with chloride anions at cryogenic temperature
Total Genus 226
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
226
sequence length
581
structure length
581
Chain Sequence
AHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Serum albumin
publication title New insights on B factors in crystal structure analysis and crystallographic model refinement
rcsb
total genus 226
structure length 581
sequence length 581
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA06
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4emxA05
2YDFA 5IIHA 1J7EA 1GNJA 1HK4A 3CX9A 4E99A 4K71A 4ZBQA 4LB9A 1E7AA 5FUOA 1UORA 3UIVA 2XVQA 5IIUA 3V09A 2XW1A 2VUEA 5IJEA 4L9QA 1HK1A 4G04A 2BXKA 2I30A 1E7GA 2BXPA 1HK2A 3LU6A 4HGKA 3LU7A 4PO0A 4Z69A 2BXNA 4F5TA 3V08A 1AO6A 5DBYA 5ID9A 2BXCA 1TF0A 2I2ZA 1O9XA 5GHKA 3TDLA 1E7HA 2BXAA 2BXLA 1N5UA 3JQZA 4F5VA 1KW2A 5IJ5A 1E7EA 2BXHA 1E7IA 5IJFA 4L8UA 1LOTA 4ZBRA 4LA0A 2BXIA 5IFOA 2XVWA 1E7FA 2BXDA 2XVVA 4LB2A 2XW0A 2BXBA 4N0UD 5ID7A 2BXQA 2BXEA 3B9LA 4OT2A 1E7CA 1HK5A 4EMXA 1H9ZA 2VDBA 4J2VA 5IIXA 2BXMA 1E78A 4F5UA 1GNIA 1E7BA 3JRYA 4G03A 5DQFA 1BM0A 1BKEA 4LUFA 1J78A 2BXFA 2XSIA 4L9KA 4LUHA 4IW2A 4F5SA 1HA2A 3B9MA 4JK4A 3A73A 4OR0A 2XVUA 1MA9A 2BX8A 2VUFA 2BXOA 3SQJA 2BXGA 1BJ5A 1HK3A 4HGMB 4K2CA 3V03A 4IW1A 3LU8A 4N0FD 4BKEA 1KXPD 4S1YA 5HOZA
chains in the Genus database with same CATH superfamily
3MHHB 4OTTA 3NVKA 2QMCA 2ROHA 2YDFA 1J7EA 1GNJA 1HK4A 3CX9A 3FNMA 3GQXA 4G01A 4K71A 4ZBQA 4LB9A 1E7AA 3WHRA 1KDXA 4ZCGA 1UORA 5FUOA 3FWCC 2NQOA 3UIVA 2XVQA 5IIUA 3V09A 2XW1A 2VUEA 5IJEA 4Z9OA 4L9QA 1HK1A 4G04A 2BXKA 2LOQA 1H5WA 2EFEA 2I30A 1E7GA 2AGHB 4C31B 3FWBC 4GDLB 2BXPA 4GDKB 2AJEA 5GIPA 1HK2A 3LU6A 2XMOA 4HGKA 3LU7A 3MHSB 4PO0A 2EFHA 2K0NA 4Z69A 3H37A 2Z8KA 2BXNA 4F5TA 3V08A 1AO6A 2QHBA 5GINA 5DBYA 4ZUXV 1MIWA 2BXCA 5ID9A 3SIUB 1TF0A 1JNBA 2I2ZA 5D7GA 1O9XA 5HOZA 1SB0A 5GHKA 3TDLA 1E7HA 1TXUA 2BXAA 1MIYA 4W4UB 4D7XA 2BXLA 1N5UA 3JQZA 4WA6B 4F5VA 3PLAA 2E0XA 4NAWB 1KW2A 5IJ5A 1MM8A 2EFCA 1E7EA 2BXHA 1E7IA 4M70B 3G9KD 1MUHA 5IJFA 3ICXA 4L8UA 1LOTA 4ZBRA 4LA0A 2BXIA 2CKXA 5IFOA 2XVWA 1E7FA 2BXDA 2XVVA 1LNSA 4LB2A 1MIVA 4ZBKA 2DG5A 4TQ0A 1IJGA 1NT2B 2BXBA 2LXSA 2XW0A 4FK5B 2NNWA 2LQIA 3M99C 4OTUA 4N0UD 4DM0A 3VQIA 5ID7A 2BXQA 2BXEA 2OT3A 4ZC6A 4FJCB 3B9LA 4OT2A 5BPKA 3WHSA 1E7CA 5IIHA 4N3ZA 1HK5A 2DBXA 4EMXA 3GA9L 4E99A 2Z8JA 1MUSA 1H9ZA 2VDBA 4J2VA 5IIXA 2BXMA 2V36A 3A75A 2GUTA 1E78A 4F5UA 4I9OA 1GNIA 1E7BA 3JRYA 4G03A 5DQFA 2DBWA 1BKEA 1BM0A 1FOUA 4LUFA 1J78A 3H3AA 2BXFA 2JUHA 2EFDA 4MBEC 2XSIA 4L9KA 3W1SA 4LUHA 4IW2A 3NMUA 4F5SA 1HA2A 3B9MA 4JK4A 3A73A 4DHXB 3NVIA 5B5TA 1VZSA 2DYMA 2QM6A 4OR0A 2XVUA 3NVMA 1MA9A 4GG2A 2DYOA 2BX8A 2VUFA 2BXOA 2LQHA 4FIPB 3ECPA 5GIOA 3KIKA 3SQJA 3KJLA 2BXGA 1BJ5A 1HK3A 4HGMB 4K2CA 2KWFA 2Z8IA 3SIVB 2LXTA 3WHQA 3V03A 2DBUA 4IW1A 2OZBB 2KBZA 2E0YA 3LU8A 4N0FD 4TQ1A 4BKEA 4GDXA 1KXPD 4S1YA 3BPJA 3GQUA 1VFIA 4BY9C
chains in the Genus database with same CATH topology
3MHHB 4OTTA 3NVKA 2QMCA 2ROHA 2YDFA 1J7EA 1GNJA 1HK4A 3CX9A 3FNMA 3GQXA 4G01A 4K71A 4ZBQA 4LB9A 1E7AA 3WHRA 4ZCGA 1UORA 5FUOA 3FWCC 2NQOA 3UIVA 2XVQA 5IIUA 3V09A 2XW1A 2VUEA 5IJEA 4Z9OA 4L9QA 1HK1A 4G04A 2BXKA 2LOQA 1H5WA 2EFEA 2I30A 1E7GA 4C31B 3FWBC 4GDLB 2BXPA 4GDKB 2AJEA 5GIPA 1HK2A 3LU6A 2XMOA 4HGKA 3LU7A 3MHSB 4PO0A 2EFHA 4Z69A 3H37A 2Z8KA 2BXNA 4F5TA 3V08A 1AO6A 2QHBA 5DBYA 4ZUXV 1MIWA 2BXCA 5ID9A 3SIUB 1TF0A 1JNBA 2I2ZA 5D7GA 1O9XA 5HOZA 5GHKA 3TDLA 1E7HA 1TXUA 2BXAA 1MIYA 4W4UB 2BXLA 1N5UA 3JQZA 4WA6B 4F5VA 3PLAA 2E0XA 4NAWB 1KW2A 5IJ5A 2EFCA 1E7EA 2BXHA 1E7IA 4M70B 3G9KD 5IJFA 3ICXA 4L8UA 1LOTA 4ZBRA 4LA0A 2BXIA 2CKXA 5IFOA 2XVWA 1E7FA 2BXDA 2XVVA 1LNSA 4LB2A 1MIVA 4ZBKA 2DG5A 4TQ0A 1IJGA 1NT2B 2BXBA 2XW0A 5GINA 4FK5B 2NNWA 3M99C 4OTUA 4N0UD 3VQIA 5ID7A 2BXQA 2BXEA 2OT3A 4ZC6A 4FJCB 3B9LA 4OT2A 5BPKA 3WHSA 1E7CA 5IIHA 4N3ZA 1HK5A 2DBXA 4EMXA 3GA9L 4E99A 2Z8JA 1H9ZA 2VDBA 4J2VA 5IIXA 2BXMA 2V36A 3A75A 1E78A 4F5UA 1GNIA 1E7BA 3JRYA 4G03A 5DQFA 2DBWA 1BKEA 1BM0A 1FOUA 4LUFA 1J78A 3H3AA 2BXFA 2JUHA 2EFDA 4MBEC 2XSIA 4L9KA 3W1SA 4LUHA 4IW2A 3NMUA 4F5SA 1HA2A 3B9MA 4JK4A 3A73A 4DHXB 3NVIA 5B5TA 1VZSA 2DYMA 2QM6A 4OR0A 2XVUA 3NVMA 1MA9A 4GG2A 2DYOA 2BX8A 2VUFA 2BXOA 4FIPB 5GIOA 3KIKA 3SQJA 3KJLA 2BXGA 1BJ5A 1HK3A 4HGMB 4K2CA 2Z8IA 3SIVB 3WHQA 2OZBB 3V03A 2DBUA 4IW1A 2KBZA 2E0YA 3LU8A 4N0FD 4TQ1A 4BKEA 4GDXA 1KXPD 4S1YA 3GQUA 1VFIA 4BY9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YDF A;  5IIH A;  1J7E A;  1GNJ A;  1HK4 A;  3CX9 A;  4E99 A;  4K71 A;  4ZBQ A;  4LB9 A;  1E7A A;  5FUO A;  1UOR A;  3UIV A;  2XVQ A;  5IIU A;  3V09 A;  2XW1 A;  2VUE A;  5IJE A;  4L9Q A;  1HK1 A;  4G04 A;  2BXK A;  2I30 A;  1E7G A;  2BXP A;  1HK2 A;  3LU6 A;  4HGK A;  3LU7 A;  4PO0 A;  4Z69 A;  2BXN A;  4F5T A;  3V08 A;  1AO6 A;  5DBY A;  5ID9 A;  2BXC A;  1TF0 A;  2I2Z A;  1O9X A;  5GHK A;  3TDL A;  1E7H A;  2BXA A;  2BXL A;  1N5U A;  3JQZ A;  4F5V A;  1KW2 A;  5IJ5 A;  1E7E A;  2BXH A;  1E7I A;  5IJF A;  4L8U A;  1LOT A;  4ZBR A;  4LA0 A;  2BXI A;  5IFO A;  2XVW A;  1E7F A;  2BXD A;  2XVV A;  4LB2 A;  2XW0 A;  2BXB A;  4N0U D;  5ID7 A;  2BXQ A;  2BXE A;  3B9L A;  4OT2 A;  1E7C A;  1HK5 A;  4EMX A;  1H9Z A;  2VDB A;  4J2V A;  5IIX A;  2BXM A;  1E78 A;  4F5U A;  1GNI A;  1E7B A;  3JRY A;  4G03 A;  5DQF A;  1BM0 A;  1BKE A;  4LUF A;  1J78 A;  2BXF A;  2XSI A;  4L9K A;  4LUH A;  4IW2 A;  4F5S A;  1HA2 A;  3B9M A;  4JK4 A;  3A73 A;  4OR0 A;  2XVU A;  1MA9 A;  2BX8 A;  2VUF A;  2BXO A;  3SQJ A;  2BXG A;  1BJ5 A;  1HK3 A;  4HGM B;  4K2C A;  3V03 A;  4IW1 A;  3LU8 A;  4N0F D;  4BKE A;  1KXP D;  4S1Y A;  5HOZ A; 
#chains in the Genus database with same CATH topology
 3MHH B;  4OTT A;  3NVK A;  2QMC A;  2ROH A;  2YDF A;  1J7E A;  1GNJ A;  1HK4 A;  3CX9 A;  3FNM A;  3GQX A;  4G01 A;  4K71 A;  4ZBQ A;  4LB9 A;  1E7A A;  3WHR A;  1KDX A;  4ZCG A;  1UOR A;  5FUO A;  3FWC C;  2NQO A;  3UIV A;  2XVQ A;  5IIU A;  3V09 A;  2XW1 A;  2VUE A;  5IJE A;  4Z9O A;  4L9Q A;  1HK1 A;  4G04 A;  2BXK A;  2LOQ A;  1H5W A;  2EFE A;  2I30 A;  1E7G A;  2AGH B;  4C31 B;  3FWB C;  4GDL B;  2BXP A;  4GDK B;  2AJE A;  5GIP A;  1HK2 A;  3LU6 A;  2XMO A;  4HGK A;  3LU7 A;  3MHS B;  4PO0 A;  2EFH A;  2K0N A;  4Z69 A;  3H37 A;  2Z8K A;  2BXN A;  4F5T A;  3V08 A;  1AO6 A;  2QHB A;  5GIN A;  5DBY A;  4ZUX V;  1MIW A;  2BXC A;  5ID9 A;  3SIU B;  1TF0 A;  1JNB A;  2I2Z A;  5D7G A;  1O9X A;  5HOZ A;  1SB0 A;  5GHK A;  3TDL A;  1E7H A;  1TXU A;  2BXA A;  1MIY A;  4W4U B;  4D7X A;  2BXL A;  1N5U A;  3JQZ A;  4WA6 B;  4F5V A;  3PLA A;  2E0X A;  4NAW B;  1KW2 A;  5IJ5 A;  1MM8 A;  2EFC A;  1E7E A;  2BXH A;  1E7I A;  4M70 B;  3G9K D;  1MUH A;  5IJF A;  3ICX A;  4L8U A;  1LOT A;  4ZBR A;  4LA0 A;  2BXI A;  2CKX A;  5IFO A;  2XVW A;  1E7F A;  2BXD A;  2XVV A;  1LNS A;  4LB2 A;  1MIV A;  4ZBK A;  2DG5 A;  4TQ0 A;  1IJG A;  1NT2 B;  2BXB A;  2LXS A;  2XW0 A;  4FK5 B;  2NNW A;  2LQI A;  3M99 C;  4OTU A;  4N0U D;  4DM0 A;  3VQI A;  5ID7 A;  2BXQ A;  2BXE A;  2OT3 A;  4ZC6 A;  4FJC B;  3B9L A;  4OT2 A;  5BPK A;  3WHS A;  1E7C A;  5IIH A;  4N3Z A;  1HK5 A;  2DBX A;  4EMX A;  3GA9 L;  4E99 A;  2Z8J A;  1MUS A;  1H9Z A;  2VDB A;  4J2V A;  5IIX A;  2BXM A;  2V36 A;  3A75 A;  2GUT A;  1E78 A;  4F5U A;  4I9O A;  1GNI A;  1E7B A;  3JRY A;  4G03 A;  5DQF A;  2DBW A;  1BKE A;  1BM0 A;  1FOU A;  4LUF A;  1J78 A;  3H3A A;  2BXF A;  2JUH A;  2EFD A;  4MBE C;  2XSI A;  4L9K A;  3W1S A;  4LUH A;  4IW2 A;  3NMU A;  4F5S A;  1HA2 A;  3B9M A;  4JK4 A;  3A73 A;  4DHX B;  3NVI A;  5B5T A;  1VZS A;  2DYM A;  2QM6 A;  4OR0 A;  2XVU A;  3NVM A;  1MA9 A;  4GG2 A;  2DYO A;  2BX8 A;  2VUF A;  2BXO A;  2LQH A;  4FIP B;  3ECP A;  5GIO A;  3KIK A;  3SQJ A;  3KJL A;  2BXG A;  1BJ5 A;  1HK3 A;  4HGM B;  4K2C A;  2KWF A;  2Z8I A;  3SIV B;  2LXT A;  3WHQ A;  3V03 A;  2DBU A;  4IW1 A;  2OZB B;  2KBZ A;  2E0Y A;  3LU8 A;  4N0F D;  4TQ1 A;  4BKE A;  4GDX A;  1KXP D;  4S1Y A;  3BPJ A;  3GQU A;  1VFI A;  4BY9 C; 
#chains in the Genus database with same CATH homology
 3MHH B;  4OTT A;  3NVK A;  2QMC A;  2ROH A;  2YDF A;  1J7E A;  1GNJ A;  1HK4 A;  3CX9 A;  3FNM A;  3GQX A;  4G01 A;  4K71 A;  4ZBQ A;  4LB9 A;  1E7A A;  3WHR A;  4ZCG A;  1UOR A;  5FUO A;  3FWC C;  2NQO A;  3UIV A;  2XVQ A;  5IIU A;  3V09 A;  2XW1 A;  2VUE A;  5IJE A;  4Z9O A;  4L9Q A;  1HK1 A;  4G04 A;  2BXK A;  2LOQ A;  1H5W A;  2EFE A;  2I30 A;  1E7G A;  4C31 B;  3FWB C;  4GDL B;  2BXP A;  4GDK B;  2AJE A;  5GIP A;  1HK2 A;  3LU6 A;  2XMO A;  4HGK A;  3LU7 A;  3MHS B;  4PO0 A;  2EFH A;  4Z69 A;  3H37 A;  2Z8K A;  2BXN A;  4F5T A;  3V08 A;  1AO6 A;  2QHB A;  5DBY A;  4ZUX V;  1MIW A;  2BXC A;  5ID9 A;  3SIU B;  1TF0 A;  1JNB A;  2I2Z A;  5D7G A;  1O9X A;  5HOZ A;  5GHK A;  3TDL A;  1E7H A;  1TXU A;  2BXA A;  1MIY A;  4W4U B;  2BXL A;  1N5U A;  3JQZ A;  4WA6 B;  4F5V A;  3PLA A;  2E0X A;  4NAW B;  1KW2 A;  5IJ5 A;  2EFC A;  1E7E A;  2BXH A;  1E7I A;  4M70 B;  3G9K D;  5IJF A;  3ICX A;  4L8U A;  1LOT A;  4ZBR A;  4LA0 A;  2BXI A;  2CKX A;  5IFO A;  2XVW A;  1E7F A;  2BXD A;  2XVV A;  1LNS A;  4LB2 A;  1MIV A;  4ZBK A;  2DG5 A;  4TQ0 A;  1IJG A;  1NT2 B;  2BXB A;  2XW0 A;  5GIN A;  4FK5 B;  2NNW A;  3M99 C;  4OTU A;  4N0U D;  3VQI A;  5ID7 A;  2BXQ A;  2BXE A;  2OT3 A;  4ZC6 A;  4FJC B;  3B9L A;  4OT2 A;  5BPK A;  3WHS A;  1E7C A;  5IIH A;  4N3Z A;  1HK5 A;  2DBX A;  4EMX A;  3GA9 L;  4E99 A;  2Z8J A;  1H9Z A;  2VDB A;  4J2V A;  5IIX A;  2BXM A;  2V36 A;  3A75 A;  1E78 A;  4F5U A;  1GNI A;  1E7B A;  3JRY A;  4G03 A;  5DQF A;  2DBW A;  1BKE A;  1BM0 A;  1FOU A;  4LUF A;  1J78 A;  3H3A A;  2BXF A;  2JUH A;  2EFD A;  4MBE C;  2XSI A;  4L9K A;  3W1S A;  4LUH A;  4IW2 A;  3NMU A;  4F5S A;  1HA2 A;  3B9M A;  4JK4 A;  3A73 A;  4DHX B;  3NVI A;  5B5T A;  1VZS A;  2DYM A;  2QM6 A;  4OR0 A;  2XVU A;  3NVM A;  1MA9 A;  4GG2 A;  2DYO A;  2BX8 A;  2VUF A;  2BXO A;  4FIP B;  5GIO A;  3KIK A;  3SQJ A;  3KJL A;  2BXG A;  1BJ5 A;  1HK3 A;  4HGM B;  4K2C A;  2Z8I A;  3SIV B;  3WHQ A;  2OZB B;  3V03 A;  2DBU A;  4IW1 A;  2KBZ A;  2E0Y A;  3LU8 A;  4N0F D;  4TQ1 A;  4BKE A;  4GDX A;  1KXP D;  4S1Y A;  3GQU A;  1VFI A;  4BY9 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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