4EN6A

Crystal structure of ha70 (ha3) subcomponent of clostridium botulinum type c progenitor toxin in complex with alpha 2-3-sialyllactose
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
170
structure length
170
Chain Sequence
SINNVNLADGNYVVNRGDGWILSRQNQNLGGNISNNGCTAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTAPSNKSLYMYLQYTYIRYEIIKVLQNTVTERAVLYVPSLGYVKSIEFNSEEQIDKNFYFTSQDKCILNEKFIYKKIDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Hemagglutinin components HA-22/23/53
publication title Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
pubmed doi rcsb
source organism Clostridium botulinum
total genus 36
structure length 170
sequence length 170
ec nomenclature
pdb deposition date 2012-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1750.20 Alpha Beta 2-Layer Sandwich hemolytic lectin cel-iii, domain 3 hemolytic lectin cel-iii, domain 3 4en6A00
2YHJA 3WIND 3ZIWA 4EN9A 2ZOEA 4LO5A 4EN9B 2ZOEB 2ZS6A 3WINE 4LO5B 3ZIXA 2ZS6B 2XH6A 4LO6A 4EN6A 4LO4A 4EN8A 4LO6B 4EN8B 4EN7A 4EN6B 4LO4B 4EN7B 4P5HA 3AM2A
chains in the Genus database with same CATH superfamily
2YHJA 3WIND 3ZIWA 4EN9A 2ZOEA 4LO5A 4EN9B 2ZOEB 2ZS6A 3WINE 4LO5B 3ZIXA 2ZS6B 2XH6A 4LO6A 4EN6A 4LO4A 2Z48A 4EN8A 4LO6B 2Z49A 4EN8B 4EN7A 4EN6B 1VCLA 4LO4B 3W9TA 4EN7B 4P5HA 3AM2A
chains in the Genus database with same CATH topology
2YHJA 3WIND 3ZIWA 4EN9A 2ZOEA 4LO5A 4EN9B 2ZOEB 2ZS6A 3WINE 4LO5B 3ZIXA 2ZS6B 2XH6A 4LO6A 4EN6A 4LO4A 4EN8A 4LO6B 4EN8B 4EN7A 4EN6B 4LO4B 4EN7B 4P5HA 3AM2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YHJ A;  3WIN D;  3ZIW A;  4EN9 A;  2ZOE A;  4LO5 A;  4EN9 B;  2ZOE B;  2ZS6 A;  3WIN E;  4LO5 B;  3ZIX A;  2ZS6 B;  2XH6 A;  4LO6 A;  4EN6 A;  4LO4 A;  4EN8 A;  4LO6 B;  4EN8 B;  4EN7 A;  4EN6 B;  4LO4 B;  4EN7 B;  4P5H A;  3AM2 A; 
#chains in the Genus database with same CATH topology
 2YHJ A;  3WIN D;  3ZIW A;  4EN9 A;  2ZOE A;  4LO5 A;  4EN9 B;  2ZOE B;  2ZS6 A;  3WIN E;  4LO5 B;  3ZIX A;  2ZS6 B;  2XH6 A;  4LO6 A;  4EN6 A;  4LO4 A;  2Z48 A;  4EN8 A;  4LO6 B;  2Z49 A;  4EN8 B;  4EN7 A;  4EN6 B;  1VCL A;  4LO4 B;  3W9T A;  4EN7 B;  4P5H A;  3AM2 A; 
#chains in the Genus database with same CATH homology
 2YHJ A;  3WIN D;  3ZIW A;  4EN9 A;  2ZOE A;  4LO5 A;  4EN9 B;  2ZOE B;  2ZS6 A;  3WIN E;  4LO5 B;  3ZIX A;  2ZS6 B;  2XH6 A;  4LO6 A;  4EN6 A;  4LO4 A;  4EN8 A;  4LO6 B;  4EN8 B;  4EN7 A;  4EN6 B;  4LO4 B;  4EN7 B;  4P5H A;  3AM2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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