4EN8A

Crystal structure of ha70 (ha3) subcomponent of clostridium botulinum type c progenitor toxin in complex with alpha 2-6-sialyllactose
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
170
structure length
170
Chain Sequence
SINNVNLADGNYVVNRGDGWILSRQNQNLGGNISNNGCTAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTAPSNKSLYMYLQYTYIRYEIIKVLQNTVTERAVLYVPSLGYVKSIEFNSEEQIDKNFYFTSQDKCILNEKFIYKKIDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Clostridium botulinum
molecule keywords Hemagglutinin components HA-22/23/53
total genus 33
structure length 170
sequence length 170
ec nomenclature
pdb deposition date 2012-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1750.20 Alpha Beta 2-Layer Sandwich hemolytic lectin cel-iii, domain 3 hemolytic lectin cel-iii, domain 3 4en8A00
4EN8A 4LO5A 4LO4A 4EN9B 4EN6A 3ZIWA 2ZOEA 4EN7A 4LO6A 2ZS6A 4EN8B 4LO5B 4LO4B 4EN6B 4EN9A 2ZOEB 4EN7B 3ZIXA 3WIND 3AM2A 2YHJA 2XH6A 4LO6B 3WINE 2ZS6B 4P5HA
chains in the Genus database with same CATH superfamily
4EN8A 4LO5A 4LO4A 4EN9B 4EN6A 3W9TA 3ZIWA 2ZOEA 4EN7A 2Z49A 4LO6A 2ZS6A 4EN8B 4LO5B 1VCLA 4LO4B 2Z48A 4EN6B 4EN9A 2ZOEB 4EN7B 3ZIXA 3WIND 3AM2A 2YHJA 2XH6A 4LO6B 3WINE 2ZS6B 4P5HA
chains in the Genus database with same CATH topology
4EN8A 4LO5A 4LO4A 4EN9B 4EN6A 3ZIWA 2ZOEA 4EN7A 4LO6A 2ZS6A 4EN8B 4LO5B 4LO4B 4EN6B 4EN9A 2ZOEB 4EN7B 3ZIXA 3WIND 3AM2A 2YHJA 2XH6A 4LO6B 3WINE 2ZS6B 4P5HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EN8 A;  4LO5 A;  4LO4 A;  4EN9 B;  4EN6 A;  3ZIW A;  2ZOE A;  4EN7 A;  4LO6 A;  2ZS6 A;  4EN8 B;  4LO5 B;  4LO4 B;  4EN6 B;  4EN9 A;  2ZOE B;  4EN7 B;  3ZIX A;  3WIN D;  3AM2 A;  2YHJ A;  2XH6 A;  4LO6 B;  3WIN E;  2ZS6 B;  4P5H A; 
#chains in the Genus database with same CATH topology
 4EN8 A;  4LO5 A;  4LO4 A;  4EN9 B;  4EN6 A;  3W9T A;  3ZIW A;  2ZOE A;  4EN7 A;  2Z49 A;  4LO6 A;  2ZS6 A;  4EN8 B;  4LO5 B;  1VCL A;  4LO4 B;  2Z48 A;  4EN6 B;  4EN9 A;  2ZOE B;  4EN7 B;  3ZIX A;  3WIN D;  3AM2 A;  2YHJ A;  2XH6 A;  4LO6 B;  3WIN E;  2ZS6 B;  4P5H A; 
#chains in the Genus database with same CATH homology
 4EN8 A;  4LO5 A;  4LO4 A;  4EN9 B;  4EN6 A;  3ZIW A;  2ZOE A;  4EN7 A;  4LO6 A;  2ZS6 A;  4EN8 B;  4LO5 B;  4LO4 B;  4EN6 B;  4EN9 A;  2ZOE B;  4EN7 B;  3ZIX A;  3WIN D;  3AM2 A;  2YHJ A;  2XH6 A;  4LO6 B;  3WIN E;  2ZS6 B;  4P5H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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