4EOBA

Structure of the type vi peptidoglycan amidase effector tse1 from pseudomonas aeruginosa
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
147
structure length
147
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords type VI amidase effector Tse1
total genus 40
structure length 147
sequence length 147
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-04-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4eobA00
4CGKA 4FGDA 3NE0A 2IO7A 2EVRA 3A2YA 2IOAA 2HBWA 3S0QA 4FQBA 3VPIA 3H41A 4EOBA 4LJ1A 4HZ9A 4FGIA 4Q4NA 4Q4GX 4HPEA 2K1GA 2K3AA 2IF6A 3GT2A 4HZBA 4CSHA 4F0VA 3A30A 4EQAA 4R0KA 3VPJA 2VOBA 4JXBA 4F4MA 2VPMA 4CT3A 2IO8A 2FG0A 4FGEA 4OLKA 3NPFA 3O98A 2IO9A 3KW0A 2LRJA 2VPSA 3I86A 4EQ8A 4FQAA 2IOBA 2XIVA 3M1UA 3A2ZA 3PBIA 3PVQA 4FDYA 3PBCA 4F0WA 4Q4TA
chains in the Genus database with same CATH superfamily
4CGKA 4FGDA 3NE0A 2IO7A 2EVRA 3A2YA 2IOAA 2HBWA 2WP7A 3S0QA 4FQBA 3VPIA 3H41A 4EOBA 4LJ1A 4HZ9A 4FGIA 4Q4NA 4Q4GX 4HPEA 2K1GA 2K3AA 2IF6A 3GT2A 4HZBA 4J30A 4CSHA 4F0VA 3A30A 4EQAA 4R0KA 3EBQA 3VPJA 2VOBA 4JXBA 4F4MA 2VPMA 4CT3A 2IO8A 2FG0A 4FGEA 4OLKA 4J32A 3NPFA 4HFFA 3O98A 2IO9A 3KW0A 2LRJA 2VPSA 3I86A 4HFLA 4FQAA 4EQ8A 2IOBA 2XIVA 3M1UA 3A2ZA 3PBIA 3PVQA 4FDYA 3PBCA 4F0WA 4JURA 4HFKA 4Q4TA
chains in the Genus database with same CATH topology
4CGKA 4FGDA 3NE0A 2IO7A 2EVRA 3A2YA 2IOAA 2HBWA 3S0QA 4FQBA 3VPIA 3H41A 4EOBA 4LJ1A 4HZ9A 4FGIA 4Q4NA 4Q4GX 4HPEA 2K1GA 2K3AA 2IF6A 3GT2A 4HZBA 4CSHA 4F0VA 3A30A 4EQAA 4R0KA 3VPJA 2VOBA 4JXBA 4F4MA 2VPMA 4CT3A 2IO8A 2FG0A 4FGEA 4OLKA 3NPFA 3O98A 2IO9A 3KW0A 2LRJA 2VPSA 3I86A 4EQ8A 4FQAA 2IOBA 2XIVA 3M1UA 3A2ZA 3PBIA 3PVQA 4FDYA 3PBCA 4F0WA 4Q4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CGK A;  4FGD A;  3NE0 A;  2IO7 A;  2EVR A;  3A2Y A;  2IOA A;  2HBW A;  3S0Q A;  4FQB A;  3VPI A;  3H41 A;  4EOB A;  4LJ1 A;  4HZ9 A;  4FGI A;  4Q4N A;  4Q4G X;  4HPE A;  2K1G A;  2K3A A;  2IF6 A;  3GT2 A;  4HZB A;  4CSH A;  4F0V A;  3A30 A;  4EQA A;  4R0K A;  3VPJ A;  2VOB A;  4JXB A;  4F4M A;  2VPM A;  4CT3 A;  2IO8 A;  2FG0 A;  4FGE A;  4OLK A;  3NPF A;  3O98 A;  2IO9 A;  3KW0 A;  2LRJ A;  2VPS A;  3I86 A;  4EQ8 A;  4FQA A;  2IOB A;  2XIV A;  3M1U A;  3A2Z A;  3PBI A;  3PVQ A;  4FDY A;  3PBC A;  4F0W A;  4Q4T A; 
#chains in the Genus database with same CATH topology
 4CGK A;  4FGD A;  3NE0 A;  2IO7 A;  2EVR A;  3A2Y A;  2IOA A;  2HBW A;  2WP7 A;  3S0Q A;  4FQB A;  3VPI A;  3H41 A;  4EOB A;  4LJ1 A;  4HZ9 A;  4FGI A;  4Q4N A;  4Q4G X;  4HPE A;  2K1G A;  2K3A A;  2IF6 A;  3GT2 A;  4HZB A;  4J30 A;  4CSH A;  4F0V A;  3A30 A;  4EQA A;  4R0K A;  3EBQ A;  3VPJ A;  2VOB A;  4JXB A;  4F4M A;  2VPM A;  4CT3 A;  2IO8 A;  2FG0 A;  4FGE A;  4OLK A;  4J32 A;  3NPF A;  4HFF A;  3O98 A;  2IO9 A;  3KW0 A;  2LRJ A;  2VPS A;  3I86 A;  4HFL A;  4FQA A;  4EQ8 A;  2IOB A;  2XIV A;  3M1U A;  3A2Z A;  3PBI A;  3PVQ A;  4FDY A;  3PBC A;  4F0W A;  4JUR A;  4HFK A;  4Q4T A; 
#chains in the Genus database with same CATH homology
 4CGK A;  4FGD A;  3NE0 A;  2IO7 A;  2EVR A;  3A2Y A;  2IOA A;  2HBW A;  3S0Q A;  4FQB A;  3VPI A;  3H41 A;  4EOB A;  4LJ1 A;  4HZ9 A;  4FGI A;  4Q4N A;  4Q4G X;  4HPE A;  2K1G A;  2K3A A;  2IF6 A;  3GT2 A;  4HZB A;  4CSH A;  4F0V A;  3A30 A;  4EQA A;  4R0K A;  3VPJ A;  2VOB A;  4JXB A;  4F4M A;  2VPM A;  4CT3 A;  2IO8 A;  2FG0 A;  4FGE A;  4OLK A;  3NPF A;  3O98 A;  2IO9 A;  3KW0 A;  2LRJ A;  2VPS A;  3I86 A;  4EQ8 A;  4FQA A;  2IOB A;  2XIV A;  3M1U A;  3A2Z A;  3PBI A;  3PVQ A;  4FDY A;  3PBC A;  4F0W A;  4Q4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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