4EP8B

Initial urease structure for radiation damage experiment at 100 k
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Urease subunit alpha
publication title Spatial distribution of radiation damage to crystalline proteins at 25-300 K.
pubmed doi rcsb
source organism Enterobacter aerogenes
total genus 19
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2012-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4ep8B00
3QGKA 4G7EB 3UBPB 1FWCB 1A5MB 4G7EA 2KAUB 1KRAB 4CEXB 1A5LB 5A6TB 5FSDB 4GOAA 1EJUB 1EJTB 1FWAB 1KRBB 4EPEB 1IE7B 1KRCB 4CEUB 1EJXB 1FWJB 5G4HB 1FWEB 5FSEB 1A5KB 1FWIB 3LA4A 4H9MA 1EJRB 4EPDB 4GY7A 1FWHB 1EF2B 1A5OB 4Z42B 1FWDB 1E9YA 2UBPB 1FWFB 4EPBB 1EJSB 1A5NB 1E9ZA 1FWGB 4EP8B 4UBPB 1EJVB 1S3TB 1UBPB 4AC7B 1EJWB 3QGAA 1FWBB
chains in the Genus database with same CATH superfamily
3QGKA 4G7EB 3UBPB 1FWCB 1A5MB 4G7EA 2KAUB 1KRAB 4CEXB 1A5LB 5A6TB 5FSDB 4GOAA 1EJUB 1EJTB 1FWAB 1KRBB 4EPEB 1IE7B 1KRCB 4CEUB 1EJXB 1FWJB 5G4HB 1FWEB 5FSEB 1A5KB 1FWIB 3LA4A 4H9MA 1EJRB 4EPDB 4GY7A 1FWHB 1EF2B 1A5OB 4Z42B 1FWDB 1E9YA 2UBPB 1FWFB 4EPBB 1EJSB 1A5NB 1E9ZA 1FWGB 4EP8B 4UBPB 1EJVB 1S3TB 1UBPB 4AC7B 1EJWB 3QGAA 1FWBB
chains in the Genus database with same CATH topology
3QGKA 4G7EB 3UBPB 1FWCB 1A5MB 4G7EA 2KAUB 1KRAB 4CEXB 1A5LB 5A6TB 5FSDB 4GOAA 1EJUB 1EJTB 1FWAB 1KRBB 4EPEB 1IE7B 1KRCB 4CEUB 1EJXB 1FWJB 5G4HB 1FWEB 5FSEB 1A5KB 1FWIB 3LA4A 4H9MA 1EJRB 4EPDB 4GY7A 1FWHB 1EF2B 1A5OB 4Z42B 1FWDB 1E9YA 2UBPB 1FWFB 4EPBB 1EJSB 1A5NB 1E9ZA 1FWGB 4EP8B 4UBPB 1EJVB 1S3TB 1UBPB 4AC7B 1EJWB 3QGAA 1FWBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QGK A;  4G7E B;  3UBP B;  1FWC B;  1A5M B;  4G7E A;  2KAU B;  1KRA B;  4CEX B;  1A5L B;  5A6T B;  5FSD B;  4GOA A;  1EJU B;  1EJT B;  1FWA B;  1KRB B;  4EPE B;  1IE7 B;  1KRC B;  4CEU B;  1EJX B;  1FWJ B;  5G4H B;  1FWE B;  5FSE B;  1A5K B;  1FWI B;  3LA4 A;  4H9M A;  1EJR B;  4EPD B;  4GY7 A;  1FWH B;  1EF2 B;  1A5O B;  4Z42 B;  1FWD B;  1E9Y A;  2UBP B;  1FWF B;  4EPB B;  1EJS B;  1A5N B;  1E9Z A;  1FWG B;  4EP8 B;  4UBP B;  1EJV B;  1S3T B;  1UBP B;  4AC7 B;  1EJW B;  3QGA A;  1FWB B; 
#chains in the Genus database with same CATH topology
 3QGK A;  4G7E B;  3UBP B;  1FWC B;  1A5M B;  4G7E A;  2KAU B;  1KRA B;  4CEX B;  1A5L B;  5A6T B;  5FSD B;  4GOA A;  1EJU B;  1EJT B;  1FWA B;  1KRB B;  4EPE B;  1IE7 B;  1KRC B;  4CEU B;  1EJX B;  1FWJ B;  5G4H B;  1FWE B;  5FSE B;  1A5K B;  1FWI B;  3LA4 A;  4H9M A;  1EJR B;  4EPD B;  4GY7 A;  1FWH B;  1EF2 B;  1A5O B;  4Z42 B;  1FWD B;  1E9Y A;  2UBP B;  1FWF B;  4EPB B;  1EJS B;  1A5N B;  1E9Z A;  1FWG B;  4EP8 B;  4UBP B;  1EJV B;  1S3T B;  1UBP B;  4AC7 B;  1EJW B;  3QGA A;  1FWB B; 
#chains in the Genus database with same CATH homology
 3QGK A;  4G7E B;  3UBP B;  1FWC B;  1A5M B;  4G7E A;  2KAU B;  1KRA B;  4CEX B;  1A5L B;  5A6T B;  5FSD B;  4GOA A;  1EJU B;  1EJT B;  1FWA B;  1KRB B;  4EPE B;  1IE7 B;  1KRC B;  4CEU B;  1EJX B;  1FWJ B;  5G4H B;  1FWE B;  5FSE B;  1A5K B;  1FWI B;  3LA4 A;  4H9M A;  1EJR B;  4EPD B;  4GY7 A;  1FWH B;  1EF2 B;  1A5O B;  4Z42 B;  1FWD B;  1E9Y A;  2UBP B;  1FWF B;  4EPB B;  1EJS B;  1A5N B;  1E9Z A;  1FWG B;  4EP8 B;  4UBP B;  1EJV B;  1S3T B;  1UBP B;  4AC7 B;  1EJW B;  3QGA A;  1FWB B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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