4EPDB

Initial urease structure for radiation damage experiment at 300 k
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Urease subunit alpha
publication title Spatial distribution of radiation damage to crystalline proteins at 25-300 K.
pubmed doi rcsb
source organism Enterobacter aerogenes
total genus 18
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2012-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4epdB00
4CEXB 3QGKA 4G7EA 1FWEB 4CEUB 4EP8B 5FSEB 4EPEB 1A5MB 1EJRB 4AC7B 4EPDB 1FWJB 1EJSB 4G7EB 1FWGB 4H9MA 5A6TB 1FWBB 5G4HB 1KRAB 1KRBB 1A5LB 4GOAA 1A5NB 4UBPB 1EJTB 1S3TB 4EPBB 1FWAB 2UBPB 1EF2B 3UBPB 1E9YA 1E9ZA 2KAUB 3LA4A 1FWDB 1EJXB 1A5KB 1FWHB 1A5OB 1EJUB 1FWCB 1FWFB 1KRCB 1EJVB 1UBPB 3QGAA 4GY7A 4Z42B 1IE7B 5FSDB 1EJWB 1FWIB
chains in the Genus database with same CATH superfamily
4CEXB 3QGKA 4G7EA 1FWEB 4CEUB 4EP8B 5FSEB 4EPEB 1A5MB 1EJRB 4AC7B 4EPDB 1FWJB 1EJSB 4G7EB 1FWGB 4H9MA 5A6TB 1FWBB 5G4HB 1KRAB 1KRBB 1A5LB 4GOAA 1A5NB 4UBPB 1EJTB 1S3TB 4EPBB 1FWAB 2UBPB 1EF2B 3UBPB 1E9YA 1E9ZA 2KAUB 3LA4A 1FWDB 1EJXB 1A5KB 1FWHB 1A5OB 1EJUB 1FWCB 1FWFB 1KRCB 1EJVB 1UBPB 3QGAA 4GY7A 4Z42B 1IE7B 5FSDB 1EJWB 1FWIB
chains in the Genus database with same CATH topology
4CEXB 3QGKA 4G7EA 1FWEB 4CEUB 4EP8B 5FSEB 4EPEB 1A5MB 1EJRB 4AC7B 4EPDB 1FWJB 1EJSB 4G7EB 1FWGB 4H9MA 5A6TB 1FWBB 5G4HB 1KRAB 1KRBB 1A5LB 4GOAA 1A5NB 4UBPB 1EJTB 1S3TB 4EPBB 1FWAB 2UBPB 1EF2B 3UBPB 1E9YA 1E9ZA 2KAUB 3LA4A 1FWDB 1EJXB 1A5KB 1FWHB 1A5OB 1EJUB 1FWCB 1FWFB 1KRCB 1EJVB 1UBPB 3QGAA 4GY7A 4Z42B 1IE7B 5FSDB 1EJWB 1FWIB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CEX B;  3QGK A;  4G7E A;  1FWE B;  4CEU B;  4EP8 B;  5FSE B;  4EPE B;  1A5M B;  1EJR B;  4AC7 B;  4EPD B;  1FWJ B;  1EJS B;  4G7E B;  1FWG B;  4H9M A;  5A6T B;  1FWB B;  5G4H B;  1KRA B;  1KRB B;  1A5L B;  4GOA A;  1A5N B;  4UBP B;  1EJT B;  1S3T B;  4EPB B;  1FWA B;  2UBP B;  1EF2 B;  3UBP B;  1E9Y A;  1E9Z A;  2KAU B;  3LA4 A;  1FWD B;  1EJX B;  1A5K B;  1FWH B;  1A5O B;  1EJU B;  1FWC B;  1FWF B;  1KRC B;  1EJV B;  1UBP B;  3QGA A;  4GY7 A;  4Z42 B;  1IE7 B;  5FSD B;  1EJW B;  1FWI B; 
#chains in the Genus database with same CATH topology
 4CEX B;  3QGK A;  4G7E A;  1FWE B;  4CEU B;  4EP8 B;  5FSE B;  4EPE B;  1A5M B;  1EJR B;  4AC7 B;  4EPD B;  1FWJ B;  1EJS B;  4G7E B;  1FWG B;  4H9M A;  5A6T B;  1FWB B;  5G4H B;  1KRA B;  1KRB B;  1A5L B;  4GOA A;  1A5N B;  4UBP B;  1EJT B;  1S3T B;  4EPB B;  1FWA B;  2UBP B;  1EF2 B;  3UBP B;  1E9Y A;  1E9Z A;  2KAU B;  3LA4 A;  1FWD B;  1EJX B;  1A5K B;  1FWH B;  1A5O B;  1EJU B;  1FWC B;  1FWF B;  1KRC B;  1EJV B;  1UBP B;  3QGA A;  4GY7 A;  4Z42 B;  1IE7 B;  5FSD B;  1EJW B;  1FWI B; 
#chains in the Genus database with same CATH homology
 4CEX B;  3QGK A;  4G7E A;  1FWE B;  4CEU B;  4EP8 B;  5FSE B;  4EPE B;  1A5M B;  1EJR B;  4AC7 B;  4EPD B;  1FWJ B;  1EJS B;  4G7E B;  1FWG B;  4H9M A;  5A6T B;  1FWB B;  5G4H B;  1KRA B;  1KRB B;  1A5L B;  4GOA A;  1A5N B;  4UBP B;  1EJT B;  1S3T B;  4EPB B;  1FWA B;  2UBP B;  1EF2 B;  3UBP B;  1E9Y A;  1E9Z A;  2KAU B;  3LA4 A;  1FWD B;  1EJX B;  1A5K B;  1FWH B;  1A5O B;  1EJU B;  1FWC B;  1FWF B;  1KRC B;  1EJV B;  1UBP B;  3QGA A;  4GY7 A;  4Z42 B;  1IE7 B;  5FSD B;  1EJW B;  1FWI B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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