4EQEA

Crystal structure of histidine triad nucleotide-binding protein 1 (hint1) from human complexed with lys-ams
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
114
structure length
113
Chain Sequence
PGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHHLHVLGGRQMHWPPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Histidine triad nucleotide-binding protein 1
publication title Side chain independent recognition of aminoacyl adenylates by the hint1 transcription suppressor.
pubmed doi rcsb
source organism Homo sapiens
total genus 30
structure length 113
sequence length 114
chains with identical sequence B
ec nomenclature ec 3.-.-.-:
pdb deposition date 2012-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 4eqeA00
5ED3A 3WO5A 2EO4A 3N1TA 3L7XA 3TW2A 3SP4A 1FHIA 5IPEA 1KPEA 4QDVA 1EMSA 4XBAA 1Y23A 3LB5A 3FITA 3NRDA 4NK0A 5RHNA 2Q4HA 4FITA 3BL7A 4EQGA 3O1CA 3P0TA 1KPAA 4INCA 5FITA 1KPFA 4EQEA 4NDIA 2FHIA 5ED6A 4RHNA 3N1SA 3IMIA 2Q4LA 5IN3A 2OIKA 3O0MA 4EGUA 6FITA 4YKLB 4ZGLA 5I2FA 1GUQA 1VLRA 4INIA 5IPCA 3QGZA 4ZKVA 3RHNA 5EMTA 1KPCA 3I4SA 1FITA 4NDHA 1HXQA 4NJZA 3BLAA 1XMMA 1HXPA 3BL9A 2H39A 4QDEA 3SPLA 1ST4A 3O1XA 3KSVA 1ZWJA 5CS2A 5IPBA 1KPBA 1RZYA 3ANOA 5BV3A 4ZKLA 1ST0A 4NDGA 3OXKA 3I24A 6RHNA 3O1ZA 4NJYA 3OJ7A 1XMLA 4NDFA 3OHEA 5I2EA 1AV5A 2FITA 1Z84A 3OMFA 1GUPA 4QEBA 3SPDA 4EQHA 3R6FA 5IPDA 4NJXA 3SZQA
chains in the Genus database with same CATH superfamily
5ED3A 3WO5A 2EO4A 3N1TA 3L7XA 3TW2A 3SP4A 1FHIA 5IPEA 1L9VA 2R7PA 1KPEA 4QDVA 1EMSA 4XBAA 1Y23A 3LB5A 3FITA 3NRDA 4NK0A 5RHNA 2Q4HA 4FITA 3BL7A 4EQGA 3O1CA 3P0TA 1KPAA 4INCA 5FITA 1KPFA 4EQEA 4NDIA 4G0JA 4I5TA 2FHIA 5ED6A 4RHNA 3N1SA 3IMIA 2Q4LA 5IN3A 2OIKA 3O0MA 4EGUA 6FITA 4YKLB 2R7JA 4ZGLA 5I2FA 1GUQA 1VLRA 4INIA 2POFA 5IPCA 3QGZA 4ZKVA 2R7CA 3RHNA 5EMTA 1KPCA 3I4SA 1FITA 4NDHA 4G0AA 1HXQA 4NJZA 2GU0A 3BLAA 1XMMA 1HXPA 3BL9A 2H39A 4QDEA 3SPLA 1ST4A 3O1XA 3KSVA 1ZWJA 5CS2A 5IPBA 1KPBA 1RZYA 3ANOA 4I5WA 5BV3A 4ZKLA 1ST0A 4NDGA 3OXKA 3I24A 6RHNA 3O1ZA 4I5VA 4NJYA 3OJ7A 1XMLA 4NDFA 3OHEA 2LJWA 5I2EA 1AV5A 2R8FA 2FITA 1Z84A 3OMFA 1GUPA 4QEBA 3SPDA 4EQHA 3R6FA 5IPDA 4NJXA 3SZQA
chains in the Genus database with same CATH topology
5ED3A 3WO5A 2EO4A 3N1TA 3L7XA 3TW2A 3SP4A 1FHIA 5IPEA 1KPEA 4QDVA 1EMSA 4XBAA 1Y23A 3LB5A 3FITA 3NRDA 4NK0A 5RHNA 2Q4HA 4FITA 3BL7A 4EQGA 3O1CA 3P0TA 1KPAA 4INCA 5FITA 1KPFA 4EQEA 4NDIA 2FHIA 5ED6A 4RHNA 3N1SA 3IMIA 2Q4LA 5IN3A 2OIKA 3O0MA 4EGUA 6FITA 4YKLB 4ZGLA 5I2FA 1GUQA 1VLRA 4INIA 5IPCA 3QGZA 4ZKVA 3RHNA 5EMTA 1KPCA 3I4SA 1FITA 4NDHA 1HXQA 4NJZA 3BLAA 1XMMA 1HXPA 3BL9A 2H39A 4QDEA 3SPLA 1ST4A 3O1XA 3KSVA 1ZWJA 5CS2A 5IPBA 1KPBA 1RZYA 3ANOA 5BV3A 4ZKLA 1ST0A 4NDGA 3OXKA 3I24A 6RHNA 3O1ZA 4NJYA 3OJ7A 1XMLA 4NDFA 3OHEA 5I2EA 1AV5A 2FITA 1Z84A 3OMFA 1GUPA 4QEBA 3SPDA 4EQHA 3R6FA 5IPDA 4NJXA 3SZQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ED3 A;  3WO5 A;  2EO4 A;  3N1T A;  3L7X A;  3TW2 A;  3SP4 A;  1FHI A;  5IPE A;  1KPE A;  4QDV A;  1EMS A;  4XBA A;  1Y23 A;  3LB5 A;  3FIT A;  3NRD A;  4NK0 A;  5RHN A;  2Q4H A;  4FIT A;  3BL7 A;  4EQG A;  3O1C A;  3P0T A;  1KPA A;  4INC A;  5FIT A;  1KPF A;  4EQE A;  4NDI A;  2FHI A;  5ED6 A;  4RHN A;  3N1S A;  3IMI A;  2Q4L A;  5IN3 A;  2OIK A;  3O0M A;  4EGU A;  6FIT A;  4YKL B;  4ZGL A;  5I2F A;  1GUQ A;  1VLR A;  4INI A;  5IPC A;  3QGZ A;  4ZKV A;  3RHN A;  5EMT A;  1KPC A;  3I4S A;  1FIT A;  4NDH A;  1HXQ A;  4NJZ A;  3BLA A;  1XMM A;  1HXP A;  3BL9 A;  2H39 A;  4QDE A;  3SPL A;  1ST4 A;  3O1X A;  3KSV A;  1ZWJ A;  5CS2 A;  5IPB A;  1KPB A;  1RZY A;  3ANO A;  5BV3 A;  4ZKL A;  1ST0 A;  4NDG A;  3OXK A;  3I24 A;  6RHN A;  3O1Z A;  4NJY A;  3OJ7 A;  1XML A;  4NDF A;  3OHE A;  5I2E A;  1AV5 A;  2FIT A;  1Z84 A;  3OMF A;  1GUP A;  4QEB A;  3SPD A;  4EQH A;  3R6F A;  5IPD A;  4NJX A;  3SZQ A; 
#chains in the Genus database with same CATH topology
 5ED3 A;  3WO5 A;  2EO4 A;  3N1T A;  3L7X A;  3TW2 A;  3SP4 A;  1FHI A;  5IPE A;  1L9V A;  2R7P A;  1KPE A;  4QDV A;  1EMS A;  4XBA A;  1Y23 A;  3LB5 A;  3FIT A;  3NRD A;  4NK0 A;  5RHN A;  2Q4H A;  4FIT A;  3BL7 A;  4EQG A;  3O1C A;  3P0T A;  1KPA A;  4INC A;  5FIT A;  1KPF A;  4EQE A;  4NDI A;  4G0J A;  4I5T A;  2FHI A;  5ED6 A;  4RHN A;  3N1S A;  3IMI A;  2Q4L A;  5IN3 A;  2OIK A;  3O0M A;  4EGU A;  6FIT A;  4YKL B;  2R7J A;  4ZGL A;  5I2F A;  1GUQ A;  1VLR A;  4INI A;  2POF A;  5IPC A;  3QGZ A;  4ZKV A;  2R7C A;  3RHN A;  5EMT A;  1KPC A;  3I4S A;  1FIT A;  4NDH A;  4G0A A;  1HXQ A;  4NJZ A;  2GU0 A;  3BLA A;  1XMM A;  1HXP A;  3BL9 A;  2H39 A;  4QDE A;  3SPL A;  1ST4 A;  3O1X A;  3KSV A;  1ZWJ A;  5CS2 A;  5IPB A;  1KPB A;  1RZY A;  3ANO A;  4I5W A;  5BV3 A;  4ZKL A;  1ST0 A;  4NDG A;  3OXK A;  3I24 A;  6RHN A;  3O1Z A;  4I5V A;  4NJY A;  3OJ7 A;  1XML A;  4NDF A;  3OHE A;  2LJW A;  5I2E A;  1AV5 A;  2R8F A;  2FIT A;  1Z84 A;  3OMF A;  1GUP A;  4QEB A;  3SPD A;  4EQH A;  3R6F A;  5IPD A;  4NJX A;  3SZQ A; 
#chains in the Genus database with same CATH homology
 5ED3 A;  3WO5 A;  2EO4 A;  3N1T A;  3L7X A;  3TW2 A;  3SP4 A;  1FHI A;  5IPE A;  1KPE A;  4QDV A;  1EMS A;  4XBA A;  1Y23 A;  3LB5 A;  3FIT A;  3NRD A;  4NK0 A;  5RHN A;  2Q4H A;  4FIT A;  3BL7 A;  4EQG A;  3O1C A;  3P0T A;  1KPA A;  4INC A;  5FIT A;  1KPF A;  4EQE A;  4NDI A;  2FHI A;  5ED6 A;  4RHN A;  3N1S A;  3IMI A;  2Q4L A;  5IN3 A;  2OIK A;  3O0M A;  4EGU A;  6FIT A;  4YKL B;  4ZGL A;  5I2F A;  1GUQ A;  1VLR A;  4INI A;  5IPC A;  3QGZ A;  4ZKV A;  3RHN A;  5EMT A;  1KPC A;  3I4S A;  1FIT A;  4NDH A;  1HXQ A;  4NJZ A;  3BLA A;  1XMM A;  1HXP A;  3BL9 A;  2H39 A;  4QDE A;  3SPL A;  1ST4 A;  3O1X A;  3KSV A;  1ZWJ A;  5CS2 A;  5IPB A;  1KPB A;  1RZY A;  3ANO A;  5BV3 A;  4ZKL A;  1ST0 A;  4NDG A;  3OXK A;  3I24 A;  6RHN A;  3O1Z A;  4NJY A;  3OJ7 A;  1XML A;  4NDF A;  3OHE A;  5I2E A;  1AV5 A;  2FIT A;  1Z84 A;  3OMF A;  1GUP A;  4QEB A;  3SPD A;  4EQH A;  3R6F A;  5IPD A;  4NJX A;  3SZQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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